-
1
-
-
33645029984
-
SIMMAP: Stochastic character mapping of discrete traits on phylogenies
-
Bollback J. SIMMAP: Stochastic character mapping of discrete traits on phylogenies. BMC Bioinf. 7 (2006) 88
-
(2006)
BMC Bioinf.
, vol.7
, pp. 88
-
-
Bollback, J.1
-
2
-
-
0036808040
-
Testing the relationship between morphological and molecular rates of change along phylogenies
-
Bromham L., Woolfit M., Lee M.S.Y., and Rambaut A. Testing the relationship between morphological and molecular rates of change along phylogenies. Evolution 56 (2002) 1921-1930
-
(2002)
Evolution
, vol.56
, pp. 1921-1930
-
-
Bromham, L.1
Woolfit, M.2
Lee, M.S.Y.3
Rambaut, A.4
-
3
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7 (2007) 214
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
4
-
-
47749121116
-
The limitations of ancestral state reconstruction and the evolution of the ascus in the Lecanorales (lichenized Ascomycota)
-
Ekman S., Andersen H.L., and Wedin M. The limitations of ancestral state reconstruction and the evolution of the ascus in the Lecanorales (lichenized Ascomycota). Syst. Biol. 57 (2008) 141-156
-
(2008)
Syst. Biol.
, vol.57
, pp. 141-156
-
-
Ekman, S.1
Andersen, H.L.2
Wedin, M.3
-
5
-
-
0030464460
-
SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N., Gouy M., and Gautier C. SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Bioinformatics 12 (1996) 543-548
-
(1996)
Bioinformatics
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
6
-
-
0027580147
-
ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizas and rusts
-
Gardes M., and Bruns T.D. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizas and rusts. Mol. Ecol. 2 (1993) 113-118
-
(1993)
Mol. Ecol.
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
7
-
-
77950032471
-
-
Hallingbäck, T, Aronsson, G, Eds, ArtDatabanken, SLU, Uppsala
-
Hallingbäck, T., Aronsson, G., (Eds.), 2009. Ekologisk katalog över storsvampar och myxomyceter (Internet version). ArtDatabanken, SLU, Uppsala, http://www.artdata.slu.se/ekokataloger.asp.
-
(2009)
Ekologisk katalog över storsvampar och myxomyceter (Internet version)
-
-
-
9
-
-
0033210889
-
Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly
-
Hopple Jr. J.S., and Vilgalys R. Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly. Mol. Phylogenet. Evol. 13 (1999) 1-19
-
(1999)
Mol. Phylogenet. Evol.
, vol.13
, pp. 1-19
-
-
Hopple Jr., J.S.1
Vilgalys, R.2
-
11
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K., Kuma K., Toh H., and Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33 (2005) 511-518
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
12
-
-
0003804933
-
-
Kirk P.M., Cannon P.F., Minter D.W., and Staplers J.A. (Eds), CAB Int, Wallingford
-
In: Kirk P.M., Cannon P.F., Minter D.W., and Staplers J.A. (Eds). Dictionary of the Fungi. 10th ed. (2008), CAB Int, Wallingford
-
(2008)
Dictionary of the Fungi. 10th ed.
-
-
-
13
-
-
0002726744
-
A revision of the genus Inocybe in Europe. I. Subgenus Inosperma and the smooth-spored species of subgenus Inocybe
-
Kuyper T.W. A revision of the genus Inocybe in Europe. I. Subgenus Inosperma and the smooth-spored species of subgenus Inocybe. Persoonia Suppl. 3 (1986) 1-247
-
(1986)
Persoonia
, Issue.SUPPL. 3
, pp. 1-247
-
-
Kuyper, T.W.1
-
14
-
-
33947420047
-
Host effects on ectomycorrhizal fungal communities: insight from eight host species in mixed conifer-broadleaf forests
-
Ishida T.A., Nara K., and Hogetsu T. Host effects on ectomycorrhizal fungal communities: insight from eight host species in mixed conifer-broadleaf forests. New Phytol. 174 (2007) 430-440
-
(2007)
New Phytol.
, vol.174
, pp. 430-440
-
-
Ishida, T.A.1
Nara, K.2
Hogetsu, T.3
-
15
-
-
77950064583
-
-
Eds, Funga Nordica, Agaricoid, Boletoid and Cyphelloid genera, Nordsvamp, Copenhagen, pp
-
Jacobsson, S., 2008. Inocybe (Fr.) In: Knudsen H, Vesterholt J. (Eds.) Funga Nordica, Agaricoid, Boletoid and Cyphelloid genera, Nordsvamp, Copenhagen, pp. 868-906
-
(2008)
Inocybe (Fr.) In: Knudsen H, Vesterholt J
, pp. 868-906
-
-
Jacobsson, S.1
-
16
-
-
39649118230
-
Phylogenetic relationships among species and genera of Lycoperdaceae based on ITS and LSU sequence data from north European taxa
-
Larsson E., and Jeppson M. Phylogenetic relationships among species and genera of Lycoperdaceae based on ITS and LSU sequence data from north European taxa. Mycol. Res. 112 (2008) 4-22
-
(2008)
Mycol. Res.
, vol.112
, pp. 4-22
-
-
Larsson, E.1
Jeppson, M.2
-
17
-
-
52949140248
-
Fourteen coprophilous species of Psathyrella identified in the Nordic countries using morphology and nuclear rDNA sequence data
-
Larsson E., and Örstadius L. Fourteen coprophilous species of Psathyrella identified in the Nordic countries using morphology and nuclear rDNA sequence data. Mycol. Res. 112 (2008) 1165-1185
-
(2008)
Mycol. Res.
, vol.112
, pp. 1165-1185
-
-
Larsson, E.1
Örstadius, L.2
-
18
-
-
75349105768
-
Taxonomy and evolutionary relationships within species of section Rimosae (Inocybe) based on ITS, LSU and mtSSU sequence data
-
Larsson E., Ryberg M., Moreau P.-A., Delcuse Mathiesen A., and Jacobsson S. Taxonomy and evolutionary relationships within species of section Rimosae (Inocybe) based on ITS, LSU and mtSSU sequence data. Persoonia 23 (2009) 86-98
-
(2009)
Persoonia
, vol.23
, pp. 86-98
-
-
Larsson, E.1
Ryberg, M.2
Moreau, P.-A.3
Delcuse Mathiesen, A.4
Jacobsson, S.5
-
19
-
-
77950047685
-
-
Maddison, W.P, Maddison, D.R, 2009. Mesquite: a modular system for evolutionary analysis. Version 2.6
-
Maddison, W.P., Maddison, D.R., 2009. Mesquite: a modular system for evolutionary analysis. Version 2.6 http://mesquiteproject.org.
-
-
-
-
20
-
-
14144255880
-
Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)
-
Matheny P.B. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Mol. Phylogenet. Evol. 35 (2005) 1-20
-
(2005)
Mol. Phylogenet. Evol.
, vol.35
, pp. 1-20
-
-
Matheny, P.B.1
-
21
-
-
33846463086
-
The new genus Auritella from Africa and Australia (Inocybaceae, Agaricales): molecular systematics, taxonomy and historical biogeography
-
Matheny P.B., and Bougher N.L. The new genus Auritella from Africa and Australia (Inocybaceae, Agaricales): molecular systematics, taxonomy and historical biogeography. Mycol. Prog. 5 (2006) 2-17
-
(2006)
Mycol. Prog.
, vol.5
, pp. 2-17
-
-
Matheny, P.B.1
Bougher, N.L.2
-
22
-
-
34247562964
-
Major clades of Agaricales: a multilocus phylogenetic overview
-
Matheny P.B., Curtis J.M., Hofstetter V., Aime M.C., Moncalvo J.M., Ge Z.W., Yang Z.L., Slot J.C., Ammirati J.F., Baroni T.J., Bougher N.L., Hughes K.W., Lodge D.J., Kerrigan R.W., Seidl M.T., Aanen D.K., DeNitis M., Daniele G.M., Desjardin D.E., Kropp B.R., Norvell L.L., Parker A., Vellinga E.C., Vilgalys R., and Hibbett D.S. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 96 (2006) 982-995
-
(2006)
Mycologia
, vol.96
, pp. 982-995
-
-
Matheny, P.B.1
Curtis, J.M.2
Hofstetter, V.3
Aime, M.C.4
Moncalvo, J.M.5
Ge, Z.W.6
Yang, Z.L.7
Slot, J.C.8
Ammirati, J.F.9
Baroni, T.J.10
Bougher, N.L.11
Hughes, K.W.12
Lodge, D.J.13
Kerrigan, R.W.14
Seidl, M.T.15
Aanen, D.K.16
DeNitis, M.17
Daniele, G.M.18
Desjardin, D.E.19
Kropp, B.R.20
Norvell, L.L.21
Parker, A.22
Vellinga, E.C.23
Vilgalys, R.24
Hibbett, D.S.25
more..
-
23
-
-
62149119183
-
Out of the palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae
-
Matheny P.B., Aime M.C., Bougher N.L., Buyck B., Desjardin D.E., Horak E., Kropp B.R., Lodge D.J., Soytong K., Trappe J.M., and Hibbett D.S. Out of the palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. J. Biogeogr. 36 (2009) 577-592
-
(2009)
J. Biogeogr.
, vol.36
, pp. 577-592
-
-
Matheny, P.B.1
Aime, M.C.2
Bougher, N.L.3
Buyck, B.4
Desjardin, D.E.5
Horak, E.6
Kropp, B.R.7
Lodge, D.J.8
Soytong, K.9
Trappe, J.M.10
Hibbett, D.S.11
-
24
-
-
0032887385
-
Using phylogenies to test macroevolutionary hypotheses of trait evolution in cranes (Gruinae)
-
Mooers A.Ø., Vamosi S.M., and Schluter D. Using phylogenies to test macroevolutionary hypotheses of trait evolution in cranes (Gruinae). Am. Nat. 154 (1999) 249-259
-
(1999)
Am. Nat.
, vol.154
, pp. 249-259
-
-
Mooers, A.Ø.1
Vamosi, S.M.2
Schluter, D.3
-
25
-
-
45749142504
-
Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification
-
Nilsson R.H., Kristiansson E., Ryberg M., Hallenberg N., and Larsson K.-H. Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol. Bioinf. 4 (2008) 193-201
-
(2008)
Evol. Bioinf.
, vol.4
, pp. 193-201
-
-
Nilsson, R.H.1
Kristiansson, E.2
Ryberg, M.3
Hallenberg, N.4
Larsson, K.-H.5
-
26
-
-
0028097770
-
Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters
-
Pagel M. Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters. Proc. R. Soc. London B Biol. Sci. 255 (1994) 37-45
-
(1994)
Proc. R. Soc. London B Biol. Sci.
, vol.255
, pp. 37-45
-
-
Pagel, M.1
-
27
-
-
9744245452
-
Bayesian estimation of ancestral character states on phylogenies
-
Pagel M., Meade A., and Barker D. Bayesian estimation of ancestral character states on phylogenies. Syst. Biol. 53 (2004) 673-684
-
(2004)
Syst. Biol.
, vol.53
, pp. 673-684
-
-
Pagel, M.1
Meade, A.2
Barker, D.3
-
28
-
-
33646735054
-
Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo
-
Pagel M., and Meade A. Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am. Nat. 167 (2006) 808-825
-
(2006)
Am. Nat.
, vol.167
, pp. 808-825
-
-
Pagel, M.1
Meade, A.2
-
29
-
-
0004222530
-
-
Påhlsson L. (Ed), TemaNord, Nordiska Ministerråd, Kopenhagen
-
In: Påhlsson L. (Ed). Vegetationstyper i Norden (1998), TemaNord, Nordiska Ministerråd, Kopenhagen
-
(1998)
Vegetationstyper i Norden
-
-
-
30
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis E., Claude J., and Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20 (2004) 289-290
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
31
-
-
5344244656
-
-
R Development Core Team, R Foundation for Statistical Computing. Vienna, Austria
-
R Development Core Team, 2008. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing. Vienna, Austria.
-
(2008)
R: A Language and Environment for Statistical Computing
-
-
-
32
-
-
4344648036
-
Bayesian inference of character evolution
-
Ronquist F. Bayesian inference of character evolution. Trends Ecol. Evol. 19 (2004) 475-481
-
(2004)
Trends Ecol. Evol.
, vol.19
, pp. 475-481
-
-
Ronquist, F.1
-
33
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
34
-
-
43349098302
-
Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)
-
Ryberg M., Nilsson R.H., Kristiansson E., Töpel M., Jacobsson S., and Larsson E. Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota). BMC Evol. Biol. 8 (2008) 50
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 50
-
-
Ryberg, M.1
Nilsson, R.H.2
Kristiansson, E.3
Töpel, M.4
Jacobsson, S.5
Larsson, E.6
-
35
-
-
0033432230
-
The role of subjectivity in reconstructing ancestral character states: a Bayesian approach to unknown rates, states, and transformation asymmetries
-
Schultz T.R., and Churchill G.A. The role of subjectivity in reconstructing ancestral character states: a Bayesian approach to unknown rates, states, and transformation asymmetries. Syst. Biol. 48 (1999) 651-664
-
(1999)
Syst. Biol.
, vol.48
, pp. 651-664
-
-
Schultz, T.R.1
Churchill, G.A.2
-
36
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
38
-
-
77950047243
-
-
Spatafora, J.W, Hughes, K.W, Blackwell, M, Eds, Mycologia
-
Spatafora, J.W., Hughes, K.W., Blackwell, M. (Eds.), 2006. A phylogeny for kingdom Fungi Deep Hypha issue. Mycologia 98.
-
(2006)
A phylogeny for kingdom Fungi Deep Hypha issue
, pp. 98
-
-
-
39
-
-
33750403801
-
RaxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RaxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (2006) 2688-2690
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
40
-
-
0002045345
-
Die gattung Inocybe in Bayern
-
Stangl J. Die gattung Inocybe in Bayern. Hopea 46 (1989) 5-388
-
(1989)
Hopea
, vol.46
, pp. 5-388
-
-
Stangl, J.1
-
41
-
-
52649138494
-
Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers
-
Tedersoo L., Jairus T., Horton B.M., Abarenkov K., Suvi T., Saar I., and Kõljalg U. Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers. New Phytol. 180 (2008) 479-490
-
(2008)
New Phytol.
, vol.180
, pp. 479-490
-
-
Tedersoo, L.1
Jairus, T.2
Horton, B.M.3
Abarenkov, K.4
Suvi, T.5
Saar, I.6
Kõljalg, U.7
-
42
-
-
34147132846
-
Mapping uncertainty and phylogenetic uncertainty in ancestral character state reconstruction: an example in the moss genus Brachytheciastrum
-
Vanderpoorten A., and Goffinet B. Mapping uncertainty and phylogenetic uncertainty in ancestral character state reconstruction: an example in the moss genus Brachytheciastrum. Syst. Biol. 55 (2006) 957-971
-
(2006)
Syst. Biol.
, vol.55
, pp. 957-971
-
-
Vanderpoorten, A.1
Goffinet, B.2
-
43
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Innis M.A., Gelfand D.H., Sininsky J.J., and White T.J. (Eds), Academic Press, New York
-
White T.J., Bruns T., Lee S., and Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sininsky J.J., and White T.J. (Eds). PCR Protocols: A Guide to Method and Applications (1990), Academic Press, New York 315-322
-
(1990)
PCR Protocols: A Guide to Method and Applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.W.4
|