Phylogenetic relationships in the genus Hebeloma based on ITS1 and 2 sequences, with special emphasis on the Hebeloma crustuliniforme complex

Mycologia

Volumn 92, Issue 2, 2000, Pages 269-281

  Aanen, Duur K ^a   Kuyper, Thomas W ^a   Boekhout, Teun ^b   Hoekstra, Rolf F ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

Author keywords

Agaricales; Ectomycorrhiza; Evolution; Host specificity; Phylogeny; Sexual intercompatibility

Indexed keywords

EID: 0000703477     PISSN: 00275514     EISSN: None     Source Type: Journal    
DOI: 10.2307/3761560     Document Type: Article

References (43)

1. Aanen DK, Kuyper TW. 1999. Intercompatibility tests in the Hebeloma crustuliniforme complex in Northwestern Europe. Mycologia 91:783-795.
2. Berbee ML, Taylor JW. 1995. From 18S ribosomal sequence data to evolution of morphology among the fungi. Can J Bot 73:S677-S683.
3. Boekhout T. 1982. De secties Denudata en Anthracophila Boekhout nom. prov. van het geslacht Hebeloma (Fr.) Kumm. in Nederland en aangrenzende gebieden. Internal report. Leiden: Rijksherbarium. 146 p.
4. Boidin J. 1986. Intercompatibility and the species concept in the saprobic Basidiomycota. Mycotaxon 26:319-336.
5. Bremer K. 1988. The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
6. Bruchet G. 1970. Contribution à l'étude du genre Hebeloma (Fr.) Kummer; partie spéciale. Bull Mens Soc Linn Lyon 39 (suppl 6). 132 p.
7. Donoghue MJ, Olmstead RG, Smith JF, Palmer JD. 1992. Phylogenetic relationships of Dipsacales based on rbcL sequences. Ann Missouri Bot Gard 79:333-345.
8. Durner J, Shah J, Klessig DF. 1997. Salicylic acid and disease resistance in plants. Trends Pl Sci 7:266-274.
9. Eriksson T. 1998. Autodecay, version 4.0. Stockholm: University of Stockholm, Department of Botany, distributed by the author.
10. Gröger F, Zschieschang G. 1981. Hebeloma-Arten mit sacchariolens-Geruch. Z Mykol 47:195-210.
11. Gryta H, Debaud J-C, Effosse A, Gay G, Marmeisse R. 1997. Fine-scale structure of populations of the ectomycorrhizal fungus Hebeloma cylindrosporum in coastal sand dune forest ecosystems. Mol Ecol 6:353-364.
12. Hacskaylo E, Bruchet G. 1972. Hebelomas as mycorrhizal fungi. Bull Torrey Bot Club 99:17-20.
13. Hallenberg N, Larsson E, Mahlapuu M. 1996. Phylogenetic studies in Peniophora. Mycol Res 100:179-187.
14. Hibbett DS, Donoghue MJ. 1998. Integrating phylogenetic analysis and classification in fungi. Mycologia 90:347-356.
15. _, Fukumasa-Nakai Y, Tsuneda A, Donoghue MJ. 1995. Phylogenetic diversity in shiitake inferred from nuclear ribosomal DNA sequences. Mycologia 87:618-638.
16. _, Pine EM, Langer E, Langer G, Donoghue MJ. 1997. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proc Natl Acad Sci USA 94:12002-12006.
17. Higgins DG, Bleasby AJ, Fuchs R. 1991. CLUSTAL V: improved software for multiple sequence alignment. Comp Applic Biosci 8:189-191.
18. Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192.
19. _, Huelsenbeck JP. 1992. Signal, noise and and reliability in phylogenetic analyses. J Heredity 83:189-195.
20. Kasuga T, Woods C, Woodward S, Mitchelson K. 1993. Heterobasidion annosum 5.8s ribosomal DNA and internal transcribed spacer sequence: rapid identification of European intersterility groups by ribosomal DNA restriction polymorphism. Curr Genet 24:433-436.
21. Kishino H, Hasegawa M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J Mol Evol 29:170-179.
22. Kretzer A, Li Y, Szaro T, Bruns TD. 1996. Internal transcribed spacer sequences from 38 recognized species of Suillus sensu lato: phylogenetic and taxonomic consequences. Mycologia 88:776-785.
23. Kühner R. 1980. Les Hyménomycètes agaricoïdes. Bull Mens Soc Linn Lyon 49(no spéc): 1-1027.
24. Kuyper TW, Vesterholt, J. 1990. The typification of Agaricus fastibilis Pers.: Fr., the type species of the genus Hebeloma (Fr.) Kumm. Persoonia 14:189-192.
25. Lee SB, Taylor JW. 1990. Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelfand DH, Sninsky JJ, White T, eds. PCR protocols. San Diego, California: Academic Press. p 282-287.
26. Liu YJ, Rogers SO, Ammirati JF. 1997. Phylogenetic relationships in Dermocyte and related Cortinarius taxa based on nuclear ribosomal DNA internal transcribed spacers. Can J Bot 75:519-532.
27. Maddison WP, Maddison DR. 1997. MacClade. Release Version 3.07. Sunderland, Massachusetts: Sinauer.
28. McLaughlin DJ, Berres ME, Szabo LJ. 1995. Molecules and morphology in Basidiomycete phylogeny. Can J Bot 73: S684-S692.
29. Molina R, Massicotte H, Trappe JM. 1992. Specificity phenomena in mycorrhizal symbioses: community-ecological consequences and practical implications. In: Allen MJ, ed. Mycorrhizal functioning - an integrative plant-fungal process. London: Chapman & Hall. p 357-423.
30. Mueller GM. 1992. Systematics of Laccaria (Agaricales) in the continental United States and Canada, with discussions on extralimital taxa and descriptions of extant types. Fieldiana, Bot, n.s. 30:1-158.
31. Petersen RH. 1995. There's more to a mushroom than meets the eye: mating studies in the Agaricales. Mycologia 87:1-17.
32. Piercey-Normore MD, Egger KN, Bérubé JA. 1998. Molecular phylogeny and evolutionary divergence of North American biological species of Armillaria. Mol Phylogenet Evol 10:49-66.
33. Sagara N. 1995. Association of ectomycorrhizal fungi with decomposed animal wastes in forest habitats: a cleaning symbiosis? Can J Bot 73:S1423-S1433.
34. Saitou N, Nei M. 1987. The Neighbor-joining Method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
35. Simpson EH. 1949. Measurement of diversity. Nature 163: 688.
36. Singer R. 1986. The Agaricales in modern taxonomy. Aufl. 4. Königstein: Koeltz Scientific Books. 981 p.
37. Smith A. 1984. Studies of species of Hebeloma (Fr.) Kummer from the Great Lakes region of North America I. Sydowia 37:271-283.
38. Smith SE, Read DJ. 1997. Mycorrhizal symbiosis. 2nd ed. London: Academic Press. 605 p.
39. Swofford DL. 1998. PAUP*: Phylogenetic analysis using parsimony, test version 4.0. Washington, DC: Smithsonian Institution.
40. Templeton AR. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221-244.
41. Vesterholt J. 1989. A revision of Hebeloma sect. Indusiata in the Nordic countries. Nord J Bot 9:289-319
42. Vilgalys R, Sun BL. 1994. Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences. Proc Natl Acad Sci USA 91:4599-4603.
43. White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White T, eds. PCR protocols. San Diego, California: Academic Press. p 315-322.