메뉴 건너뛰기




Volumn 64, Issue 6, 2010, Pages 1816-1824

Extinction rates should not be estimated from molecular phylogenies

Author keywords

Adaptive radiation; Extinction; Macroevolution; Phylogenetics

Indexed keywords

ADAPTIVE RADIATION; CLADISTICS; DIVERGENCE; EXTINCTION; LIFE HISTORY; PHYLOGENY; SPECIES RICHNESS;

EID: 77953910538     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2009.00926.x     Document Type: Article
Times cited : (446)

References (49)
  • 2
    • 0034468596 scopus 로고    scopus 로고
    • New methods for quantifying macroevolutionary patterns and processes
    • Alroy J. New methods for quantifying macroevolutionary patterns and processes. Paleobiology 2000, 26:707-733.
    • (2000) Paleobiology , vol.26 , pp. 707-733
    • Alroy, J.1
  • 3
    • 67649970481 scopus 로고    scopus 로고
    • Speciation and extinction in the fossil record of North American mammals
    • Butlin R, Bridle J, Schluter D. , eds, Cambridge Univ. Press, Cambridge, U.K
    • Alroy J. Speciation and extinction in the fossil record of North American mammals. Ecology and speciation 2008a, 301-323. Butlin RBridle JSchluter D. Pp, , eds, Cambridge Univ. Press, Cambridge, U.K
    • (2008) Ecology and speciation , pp. 301-323
    • Alroy, J.1
  • 4
    • 50049122138 scopus 로고    scopus 로고
    • The dynamics of origination and extinction in the marine fossil record
    • Alroy J. The dynamics of origination and extinction in the marine fossil record. Proc. Natl. Acad. Sci. USA 2008b, 105:11536-11542.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 11536-11542
    • Alroy, J.1
  • 6
    • 0344663948 scopus 로고    scopus 로고
    • Testing for equal rates of cladogenesis in diverse taxa
    • Bokma F. Testing for equal rates of cladogenesis in diverse taxa. Evolution 2003, 57:2469-2474.
    • (2003) Evolution , vol.57 , pp. 2469-2474
    • Bokma, F.1
  • 7
    • 60049100685 scopus 로고    scopus 로고
    • Problems detecting density depedent diversification on phylogenies
    • Bokma F. Problems detecting density depedent diversification on phylogenies. Proc. R. Soc. Lond. B 2008, 276:993-994.
    • (2008) Proc. R. Soc. Lond. B , vol.276 , pp. 993-994
    • Bokma, F.1
  • 8
    • 69249191546 scopus 로고    scopus 로고
    • Explosive radiation or cryptic mass extinction? Interpreting signatures in molecular phylogenies
    • Crisp M D, Cook L G. Explosive radiation or cryptic mass extinction? Interpreting signatures in molecular phylogenies. Evolution 2009, 2257-2265.
    • (2009) Evolution , pp. 2257-2265
    • Crisp, M.D.1    Cook, L.G.2
  • 10
    • 0028166249 scopus 로고
    • Volatility and the Phanerozoic decline of background extinction intensity
    • Gilinsky N L. Volatility and the Phanerozoic decline of background extinction intensity. Paleobiology 1994, 20:445-458.
    • (1994) Paleobiology , vol.20 , pp. 445-458
    • Gilinsky, N.L.1
  • 11
    • 0043023771 scopus 로고    scopus 로고
    • Tempo and mode of evolutionary radiation in iguanian lizards
    • Harmon L J, Schulte J A, Larson A, Losos J B. Tempo and mode of evolutionary radiation in iguanian lizards. Science 2003, 301:961-964.
    • (2003) Science , vol.301 , pp. 961-964
    • Harmon, L.J.1    Schulte, J.A.2    Larson, A.3    Losos, J.B.4
  • 13
    • 0030484686 scopus 로고    scopus 로고
    • Phylogenetic tree balance with variable and evolving speciation rates
    • Heard S B. Phylogenetic tree balance with variable and evolving speciation rates. Evolution 1996, 50:2141-2148.
    • (1996) Evolution , vol.50 , pp. 2141-2148
    • Heard, S.B.1
  • 15
    • 34548657597 scopus 로고    scopus 로고
    • Estimating a binary character's effect on speciation and extinction
    • Maddison W P, Midford P E, Otto S P. Estimating a binary character's effect on speciation and extinction. Syst. Biol. 2007, 56:701-710.
    • (2007) Syst. Biol. , vol.56 , pp. 701-710
    • Maddison, W.P.1    Midford, P.E.2    Otto, S.P.3
  • 16
    • 60249100615 scopus 로고    scopus 로고
    • Angiosperm diversification through time
    • Magallon S, Castillo A. Angiosperm diversification through time. Am. J. Bot. 2009, 96:349-365.
    • (2009) Am. J. Bot. , vol.96 , pp. 349-365
    • Magallon, S.1    Castillo, A.2
  • 17
    • 0034765180 scopus 로고    scopus 로고
    • Absolute diversification rates in angiosperm clades
    • Magallon S, Sanderson M J. Absolute diversification rates in angiosperm clades. Evolution 2001, 55:1762-1780.
    • (2001) Evolution , vol.55 , pp. 1762-1780
    • Magallon, S.1    Sanderson, M.J.2
  • 18
    • 56849086553 scopus 로고    scopus 로고
    • Ecological dynamics of clade diversification and community assembly
    • McPeek M A. Ecological dynamics of clade diversification and community assembly. Am. Nat. 2008, E270-E284.
    • (2008) Am. Nat.
    • McPeek, M.A.1
  • 19
    • 0002638760 scopus 로고    scopus 로고
    • Evolutionary process from phylogenetic tree shape
    • Mooers A O, Heard S B. Evolutionary process from phylogenetic tree shape. Q. Rev. Biol. 1997, 72:31-54.
    • (1997) Q. Rev. Biol. , vol.72 , pp. 31-54
    • Mooers, A.O.1    Heard, S.B.2
  • 20
    • 34347373517 scopus 로고    scopus 로고
    • Correlates of diversification in the plant clade dipsacales: geographic movement and evolutionary innovations
    • Moore B R, Donoghue M J. Correlates of diversification in the plant clade dipsacales: geographic movement and evolutionary innovations. Am. Nat. 2007, 170:S28-S55.
    • (2007) Am. Nat. , vol.170
    • Moore, B.R.1    Donoghue, M.J.2
  • 22
    • 33845380445 scopus 로고    scopus 로고
    • Birth-death models in macroevolution
    • Nee S. Birth-death models in macroevolution. Annu. Rev. Ecol. Evol. Syst. 2006, 37:1-17.
    • (2006) Annu. Rev. Ecol. Evol. Syst. , vol.37 , pp. 1-17
    • Nee, S.1
  • 23
    • 0026756206 scopus 로고
    • Tempo and mode of evolution revealed from molecular phylogenies
    • Nee S, Mooers A, Harvey P H. Tempo and mode of evolution revealed from molecular phylogenies. Proc. Natl. Acad. Sci. USA 1992, 89:8322-8326.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 8322-8326
    • Nee, S.1    Mooers, A.2    Harvey, P.H.3
  • 24
  • 26
    • 0345170676 scopus 로고    scopus 로고
    • Analysis of diversification: combining phylogenetic and taxonomic data
    • Paradis E. Analysis of diversification: combining phylogenetic and taxonomic data. Proc. R. Soc. Lond. B 2003, 270:2499-2505.
    • (2003) Proc. R. Soc. Lond. B , vol.270 , pp. 2499-2505
    • Paradis, E.1
  • 27
    • 2642553790 scopus 로고    scopus 로고
    • Can extinction rates be estimated without fossils?
    • Paradis E. Can extinction rates be estimated without fossils?. J. Theor. Biol. 2004, 229:19-30.
    • (2004) J. Theor. Biol. , vol.229 , pp. 19-30
    • Paradis, E.1
  • 28
    • 1042304216 scopus 로고    scopus 로고
    • APE: analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004, 20:289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 29
    • 58549114903 scopus 로고    scopus 로고
    • Phylogenetic approaches to the study of extinction
    • Purvis A. Phylogenetic approaches to the study of extinction. Annu. Rev. Ecol. Evol. Syst. 2008, 39:301-319.
    • (2008) Annu. Rev. Ecol. Evol. Syst. , vol.39 , pp. 301-319
    • Purvis, A.1
  • 30
    • 0034703844 scopus 로고    scopus 로고
    • Testing macro-evolutionary models using incomplete molecular phylogenies
    • Pybus O G, Harvey P H. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc. R. Soc. Lond. B 2000, 267:2267-2272.
    • (2000) Proc. R. Soc. Lond. B , vol.267 , pp. 2267-2272
    • Pybus, O.G.1    Harvey, P.H.2
  • 31
    • 70450193809 scopus 로고    scopus 로고
    • Extinction during evolutionary radiations: reconciling the fossil record with molecular phylogenies
    • Quental T B, Marshall C R. Extinction during evolutionary radiations: reconciling the fossil record with molecular phylogenies. Evolution 2009, 63:3158-3167.
    • (2009) Evolution , vol.63 , pp. 3158-3167
    • Quental, T.B.1    Marshall, C.R.2
  • 32
    • 85129154611 scopus 로고    scopus 로고
    • LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates
    • Rabosky D L. LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates. Evol. Bioinform. Online 2006a, 2:247-250.
    • (2006) Evol. Bioinform. Online , vol.2 , pp. 247-250
    • Rabosky, D.L.1
  • 33
    • 33748559495 scopus 로고    scopus 로고
    • Likelihood methods for detecting temporal shifts in diversification rates
    • Rabosky D L. Likelihood methods for detecting temporal shifts in diversification rates. Evolution 2006b, 60:1152-1164.
    • (2006) Evolution , vol.60 , pp. 1152-1164
    • Rabosky, D.L.1
  • 34
    • 67649964248 scopus 로고    scopus 로고
    • Ecological limits on clade diversification in higher taxa
    • Rabosky D L. Ecological limits on clade diversification in higher taxa. Am. Nat. 2009a, 173:662-674.
    • (2009) Am. Nat. , vol.173 , pp. 662-674
    • Rabosky, D.L.1
  • 35
    • 72849152456 scopus 로고    scopus 로고
    • Heritability of extinction rates links diversification patterns in molecular phylogenies and fossils
    • Rabosky D L. Heritability of extinction rates links diversification patterns in molecular phylogenies and fossils. Syst. Biol. 2009b, 58:629-640.
    • (2009) Syst. Biol. , vol.58 , pp. 629-640
    • Rabosky, D.L.1
  • 36
    • 47749105699 scopus 로고    scopus 로고
    • Explosive evolutionary radiations: decreasing speciation or increasing extinction through time?
    • Rabosky D L, Lovette I J. Explosive evolutionary radiations: decreasing speciation or increasing extinction through time?. Evolution 2008, 62:1866-1875.
    • (2008) Evolution , vol.62 , pp. 1866-1875
    • Rabosky, D.L.1    Lovette, I.J.2
  • 37
    • 36549010497 scopus 로고    scopus 로고
    • Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade
    • Rabosky D L, Donnellan S C, Talaba A L, Lovette I J. Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade. Proc. R. Soc. Lond. B 2007, 274:2915-2923.
    • (2007) Proc. R. Soc. Lond. B , vol.274 , pp. 2915-2923
    • Rabosky, D.L.1    Donnellan, S.C.2    Talaba, A.L.3    Lovette, I.J.4
  • 38
    • 0022181357 scopus 로고
    • Mathematical models of cladogenesis
    • Raup D M. Mathematical models of cladogenesis. Paleobiology 1985, 11:42-52.
    • (1985) Paleobiology , vol.11 , pp. 42-52
    • Raup, D.M.1
  • 39
    • 0242552327 scopus 로고    scopus 로고
    • Global diversification rates of passerine birds
    • Ricklefs R E. Global diversification rates of passerine birds. Proc. R. Soc. Lond. B 2003, 270:2285-2291.
    • (2003) Proc. R. Soc. Lond. B , vol.270 , pp. 2285-2291
    • Ricklefs, R.E.1
  • 40
    • 36249028141 scopus 로고    scopus 로고
    • Estimating diversification rates from phylogenetic information
    • Ricklefs R E. Estimating diversification rates from phylogenetic information. Trends Ecol. Evol. 2007, 22:601-610.
    • (2007) Trends Ecol. Evol. , vol.22 , pp. 601-610
    • Ricklefs, R.E.1
  • 41
    • 34547907766 scopus 로고    scopus 로고
    • Evolutionary diversification of clades of squamate reptiles
    • Ricklefs R E, Losos J B, Townsend T M. Evolutionary diversification of clades of squamate reptiles. J. Evol. Biol. 2007, 20:1751-1762.
    • (2007) J. Evol. Biol. , vol.20 , pp. 1751-1762
    • Ricklefs, R.E.1    Losos, J.B.2    Townsend, T.M.3
  • 42
    • 68449104279 scopus 로고    scopus 로고
    • Phylogenetic conservatism of extinctions in marine bivalves
    • Roy K, Hunt G, Jablonski D. Phylogenetic conservatism of extinctions in marine bivalves. Science 2009, 325:733-737.
    • (2009) Science , vol.325 , pp. 733-737
    • Roy, K.1    Hunt, G.2    Jablonski, D.3
  • 43
    • 19544378297 scopus 로고    scopus 로고
    • Rapid cladogenesis in marine fishes revisited
    • Ruber L, Zardoya R. Rapid cladogenesis in marine fishes revisited. Evolution 2005, 59:1119-1127.
    • (2005) Evolution , vol.59 , pp. 1119-1127
    • Ruber, L.1    Zardoya, R.2
  • 46
    • 0031741182 scopus 로고    scopus 로고
    • Estimating the rate of evolution of the rate of molecular evolution
    • Thorne J L, Kishino H, Painter I S. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 1998, 15:1647-1657.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1647-1657
    • Thorne, J.L.1    Kishino, H.2    Painter, I.S.3
  • 47
    • 51249090287 scopus 로고    scopus 로고
    • Nonrandom extinction leads to elevated loss of angiosperm evolutionary history
    • Vamosi J C, Wilson J R U. Nonrandom extinction leads to elevated loss of angiosperm evolutionary history. Ecol. Lett. 2008, 11:1047-1053.
    • (2008) Ecol. Lett. , vol.11 , pp. 1047-1053
    • Vamosi, J.C.1    Wilson, J.R.U.2
  • 48
    • 34547681631 scopus 로고    scopus 로고
    • Global patterns of diversification and species richness in amphibians
    • Wiens J J. Global patterns of diversification and species richness in amphibians. Am. Nat. 2007, 170:S86-S106.
    • (2007) Am. Nat. , vol.170
    • Wiens, J.J.1
  • 49
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 1993, 10:1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.