-
1
-
-
69449089577
-
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
-
Alfaro M E, Santini F, Brock C, Alamillo H, Dornburg A, Rabosky D L, Carnevale G, Harmon L J. Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. Proc. Natl. Acad. Sci. USA 2009, 106:13410-13414.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 13410-13414
-
-
Alfaro, M.E.1
Santini, F.2
Brock, C.3
Alamillo, H.4
Dornburg, A.5
Rabosky, D.L.6
Carnevale, G.7
Harmon, L.J.8
-
2
-
-
0034468596
-
New methods for quantifying macroevolutionary patterns and processes
-
Alroy J. New methods for quantifying macroevolutionary patterns and processes. Paleobiology 2000, 26:707-733.
-
(2000)
Paleobiology
, vol.26
, pp. 707-733
-
-
Alroy, J.1
-
3
-
-
67649970481
-
Speciation and extinction in the fossil record of North American mammals
-
Butlin R, Bridle J, Schluter D. , eds, Cambridge Univ. Press, Cambridge, U.K
-
Alroy J. Speciation and extinction in the fossil record of North American mammals. Ecology and speciation 2008a, 301-323. Butlin RBridle JSchluter D. Pp, , eds, Cambridge Univ. Press, Cambridge, U.K
-
(2008)
Ecology and speciation
, pp. 301-323
-
-
Alroy, J.1
-
4
-
-
50049122138
-
The dynamics of origination and extinction in the marine fossil record
-
Alroy J. The dynamics of origination and extinction in the marine fossil record. Proc. Natl. Acad. Sci. USA 2008b, 105:11536-11542.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 11536-11542
-
-
Alroy, J.1
-
5
-
-
3342978151
-
Phylogeny and diversification of the largest avian radiation
-
Barker F K, Cibois A, Schikler P, Feinstein J, Cracraft J. Phylogeny and diversification of the largest avian radiation. Proc. Natl. Acad. Sci. USA 2004, 101:11040-11045.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11040-11045
-
-
Barker, F.K.1
Cibois, A.2
Schikler, P.3
Feinstein, J.4
Cracraft, J.5
-
6
-
-
0344663948
-
Testing for equal rates of cladogenesis in diverse taxa
-
Bokma F. Testing for equal rates of cladogenesis in diverse taxa. Evolution 2003, 57:2469-2474.
-
(2003)
Evolution
, vol.57
, pp. 2469-2474
-
-
Bokma, F.1
-
7
-
-
60049100685
-
Problems detecting density depedent diversification on phylogenies
-
Bokma F. Problems detecting density depedent diversification on phylogenies. Proc. R. Soc. Lond. B 2008, 276:993-994.
-
(2008)
Proc. R. Soc. Lond. B
, vol.276
, pp. 993-994
-
-
Bokma, F.1
-
8
-
-
69249191546
-
Explosive radiation or cryptic mass extinction? Interpreting signatures in molecular phylogenies
-
Crisp M D, Cook L G. Explosive radiation or cryptic mass extinction? Interpreting signatures in molecular phylogenies. Evolution 2009, 2257-2265.
-
(2009)
Evolution
, pp. 2257-2265
-
-
Crisp, M.D.1
Cook, L.G.2
-
9
-
-
33344465800
-
Relaxed phylogenetics and dating with confidence
-
Drummond A J, Ho S Y W, Phillips M J, Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4:699-710.
-
(2006)
PLoS Biol.
, vol.4
, pp. 699-710
-
-
Drummond, A.J.1
Ho, S.Y.W.2
Phillips, M.J.3
Rambaut, A.4
-
10
-
-
0028166249
-
Volatility and the Phanerozoic decline of background extinction intensity
-
Gilinsky N L. Volatility and the Phanerozoic decline of background extinction intensity. Paleobiology 1994, 20:445-458.
-
(1994)
Paleobiology
, vol.20
, pp. 445-458
-
-
Gilinsky, N.L.1
-
11
-
-
0043023771
-
Tempo and mode of evolutionary radiation in iguanian lizards
-
Harmon L J, Schulte J A, Larson A, Losos J B. Tempo and mode of evolutionary radiation in iguanian lizards. Science 2003, 301:961-964.
-
(2003)
Science
, vol.301
, pp. 961-964
-
-
Harmon, L.J.1
Schulte, J.A.2
Larson, A.3
Losos, J.B.4
-
12
-
-
37549027209
-
GEIGER: investigating evolutionary radiations
-
Harmon L J, Weir J T, Brock C, Glor R E, Challenger W E. GEIGER: investigating evolutionary radiations. Bioinformatics 2008, 24:129-131.
-
(2008)
Bioinformatics
, vol.24
, pp. 129-131
-
-
Harmon, L.J.1
Weir, J.T.2
Brock, C.3
Glor, R.E.4
Challenger, W.E.5
-
13
-
-
0030484686
-
Phylogenetic tree balance with variable and evolving speciation rates
-
Heard S B. Phylogenetic tree balance with variable and evolving speciation rates. Evolution 1996, 50:2141-2148.
-
(1996)
Evolution
, vol.50
, pp. 2141-2148
-
-
Heard, S.B.1
-
14
-
-
37549050969
-
A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation
-
Hunt T, Bergsten J, Levkanicova Z, Papadopoulou A, John O S, Wild R, Hammond P M, Ahrens D, Balke M, Caterino M S. A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science 2007, 318:1913-1916.
-
(2007)
Science
, vol.318
, pp. 1913-1916
-
-
Hunt, T.1
Bergsten, J.2
Levkanicova, Z.3
Papadopoulou, A.4
John, O.S.5
Wild, R.6
Hammond, P.M.7
Ahrens, D.8
Balke, M.9
Caterino, M.S.10
et al11
-
15
-
-
34548657597
-
Estimating a binary character's effect on speciation and extinction
-
Maddison W P, Midford P E, Otto S P. Estimating a binary character's effect on speciation and extinction. Syst. Biol. 2007, 56:701-710.
-
(2007)
Syst. Biol.
, vol.56
, pp. 701-710
-
-
Maddison, W.P.1
Midford, P.E.2
Otto, S.P.3
-
16
-
-
60249100615
-
Angiosperm diversification through time
-
Magallon S, Castillo A. Angiosperm diversification through time. Am. J. Bot. 2009, 96:349-365.
-
(2009)
Am. J. Bot.
, vol.96
, pp. 349-365
-
-
Magallon, S.1
Castillo, A.2
-
17
-
-
0034765180
-
Absolute diversification rates in angiosperm clades
-
Magallon S, Sanderson M J. Absolute diversification rates in angiosperm clades. Evolution 2001, 55:1762-1780.
-
(2001)
Evolution
, vol.55
, pp. 1762-1780
-
-
Magallon, S.1
Sanderson, M.J.2
-
18
-
-
56849086553
-
Ecological dynamics of clade diversification and community assembly
-
McPeek M A. Ecological dynamics of clade diversification and community assembly. Am. Nat. 2008, E270-E284.
-
(2008)
Am. Nat.
-
-
McPeek, M.A.1
-
19
-
-
0002638760
-
Evolutionary process from phylogenetic tree shape
-
Mooers A O, Heard S B. Evolutionary process from phylogenetic tree shape. Q. Rev. Biol. 1997, 72:31-54.
-
(1997)
Q. Rev. Biol.
, vol.72
, pp. 31-54
-
-
Mooers, A.O.1
Heard, S.B.2
-
20
-
-
34347373517
-
Correlates of diversification in the plant clade dipsacales: geographic movement and evolutionary innovations
-
Moore B R, Donoghue M J. Correlates of diversification in the plant clade dipsacales: geographic movement and evolutionary innovations. Am. Nat. 2007, 170:S28-S55.
-
(2007)
Am. Nat.
, vol.170
-
-
Moore, B.R.1
Donoghue, M.J.2
-
21
-
-
14844340332
-
Detecting diversification rate variation in supertrees
-
Bininda-Emonds O P. , ed, Kluwer Academic, Dordrecht, Netherlands
-
Moore B R, Chan K M, Donoghue M J. Detecting diversification rate variation in supertrees. Phylogenetic supertrees: combining information to reveal the tree of life 2004, 487-533. Bininda-Emonds O P, Pp, , ed, Kluwer Academic, Dordrecht, Netherlands
-
(2004)
Phylogenetic supertrees: combining information to reveal the tree of life
, pp. 487-533
-
-
Moore, B.R.1
Chan, K.M.2
Donoghue, M.J.3
-
22
-
-
33845380445
-
Birth-death models in macroevolution
-
Nee S. Birth-death models in macroevolution. Annu. Rev. Ecol. Evol. Syst. 2006, 37:1-17.
-
(2006)
Annu. Rev. Ecol. Evol. Syst.
, vol.37
, pp. 1-17
-
-
Nee, S.1
-
23
-
-
0026756206
-
Tempo and mode of evolution revealed from molecular phylogenies
-
Nee S, Mooers A, Harvey P H. Tempo and mode of evolution revealed from molecular phylogenies. Proc. Natl. Acad. Sci. USA 1992, 89:8322-8326.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 8322-8326
-
-
Nee, S.1
Mooers, A.2
Harvey, P.H.3
-
24
-
-
0028585282
-
Extinction rates can be estimated from molecular phylogenies
-
Nee S, Holmes E C, May R M, Harvey P H. Extinction rates can be estimated from molecular phylogenies. Proc. R. Soc. Lond. B 1994a, 344:77-82.
-
(1994)
Proc. R. Soc. Lond. B
, vol.344
, pp. 77-82
-
-
Nee, S.1
Holmes, E.C.2
May, R.M.3
Harvey, P.H.4
-
26
-
-
0345170676
-
Analysis of diversification: combining phylogenetic and taxonomic data
-
Paradis E. Analysis of diversification: combining phylogenetic and taxonomic data. Proc. R. Soc. Lond. B 2003, 270:2499-2505.
-
(2003)
Proc. R. Soc. Lond. B
, vol.270
, pp. 2499-2505
-
-
Paradis, E.1
-
27
-
-
2642553790
-
Can extinction rates be estimated without fossils?
-
Paradis E. Can extinction rates be estimated without fossils?. J. Theor. Biol. 2004, 229:19-30.
-
(2004)
J. Theor. Biol.
, vol.229
, pp. 19-30
-
-
Paradis, E.1
-
28
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004, 20:289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
29
-
-
58549114903
-
Phylogenetic approaches to the study of extinction
-
Purvis A. Phylogenetic approaches to the study of extinction. Annu. Rev. Ecol. Evol. Syst. 2008, 39:301-319.
-
(2008)
Annu. Rev. Ecol. Evol. Syst.
, vol.39
, pp. 301-319
-
-
Purvis, A.1
-
30
-
-
0034703844
-
Testing macro-evolutionary models using incomplete molecular phylogenies
-
Pybus O G, Harvey P H. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc. R. Soc. Lond. B 2000, 267:2267-2272.
-
(2000)
Proc. R. Soc. Lond. B
, vol.267
, pp. 2267-2272
-
-
Pybus, O.G.1
Harvey, P.H.2
-
31
-
-
70450193809
-
Extinction during evolutionary radiations: reconciling the fossil record with molecular phylogenies
-
Quental T B, Marshall C R. Extinction during evolutionary radiations: reconciling the fossil record with molecular phylogenies. Evolution 2009, 63:3158-3167.
-
(2009)
Evolution
, vol.63
, pp. 3158-3167
-
-
Quental, T.B.1
Marshall, C.R.2
-
32
-
-
85129154611
-
LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates
-
Rabosky D L. LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates. Evol. Bioinform. Online 2006a, 2:247-250.
-
(2006)
Evol. Bioinform. Online
, vol.2
, pp. 247-250
-
-
Rabosky, D.L.1
-
33
-
-
33748559495
-
Likelihood methods for detecting temporal shifts in diversification rates
-
Rabosky D L. Likelihood methods for detecting temporal shifts in diversification rates. Evolution 2006b, 60:1152-1164.
-
(2006)
Evolution
, vol.60
, pp. 1152-1164
-
-
Rabosky, D.L.1
-
34
-
-
67649964248
-
Ecological limits on clade diversification in higher taxa
-
Rabosky D L. Ecological limits on clade diversification in higher taxa. Am. Nat. 2009a, 173:662-674.
-
(2009)
Am. Nat.
, vol.173
, pp. 662-674
-
-
Rabosky, D.L.1
-
35
-
-
72849152456
-
Heritability of extinction rates links diversification patterns in molecular phylogenies and fossils
-
Rabosky D L. Heritability of extinction rates links diversification patterns in molecular phylogenies and fossils. Syst. Biol. 2009b, 58:629-640.
-
(2009)
Syst. Biol.
, vol.58
, pp. 629-640
-
-
Rabosky, D.L.1
-
36
-
-
47749105699
-
Explosive evolutionary radiations: decreasing speciation or increasing extinction through time?
-
Rabosky D L, Lovette I J. Explosive evolutionary radiations: decreasing speciation or increasing extinction through time?. Evolution 2008, 62:1866-1875.
-
(2008)
Evolution
, vol.62
, pp. 1866-1875
-
-
Rabosky, D.L.1
Lovette, I.J.2
-
37
-
-
36549010497
-
Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade
-
Rabosky D L, Donnellan S C, Talaba A L, Lovette I J. Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade. Proc. R. Soc. Lond. B 2007, 274:2915-2923.
-
(2007)
Proc. R. Soc. Lond. B
, vol.274
, pp. 2915-2923
-
-
Rabosky, D.L.1
Donnellan, S.C.2
Talaba, A.L.3
Lovette, I.J.4
-
38
-
-
0022181357
-
Mathematical models of cladogenesis
-
Raup D M. Mathematical models of cladogenesis. Paleobiology 1985, 11:42-52.
-
(1985)
Paleobiology
, vol.11
, pp. 42-52
-
-
Raup, D.M.1
-
39
-
-
0242552327
-
Global diversification rates of passerine birds
-
Ricklefs R E. Global diversification rates of passerine birds. Proc. R. Soc. Lond. B 2003, 270:2285-2291.
-
(2003)
Proc. R. Soc. Lond. B
, vol.270
, pp. 2285-2291
-
-
Ricklefs, R.E.1
-
40
-
-
36249028141
-
Estimating diversification rates from phylogenetic information
-
Ricklefs R E. Estimating diversification rates from phylogenetic information. Trends Ecol. Evol. 2007, 22:601-610.
-
(2007)
Trends Ecol. Evol.
, vol.22
, pp. 601-610
-
-
Ricklefs, R.E.1
-
41
-
-
34547907766
-
Evolutionary diversification of clades of squamate reptiles
-
Ricklefs R E, Losos J B, Townsend T M. Evolutionary diversification of clades of squamate reptiles. J. Evol. Biol. 2007, 20:1751-1762.
-
(2007)
J. Evol. Biol.
, vol.20
, pp. 1751-1762
-
-
Ricklefs, R.E.1
Losos, J.B.2
Townsend, T.M.3
-
42
-
-
68449104279
-
Phylogenetic conservatism of extinctions in marine bivalves
-
Roy K, Hunt G, Jablonski D. Phylogenetic conservatism of extinctions in marine bivalves. Science 2009, 325:733-737.
-
(2009)
Science
, vol.325
, pp. 733-737
-
-
Roy, K.1
Hunt, G.2
Jablonski, D.3
-
43
-
-
19544378297
-
Rapid cladogenesis in marine fishes revisited
-
Ruber L, Zardoya R. Rapid cladogenesis in marine fishes revisited. Evolution 2005, 59:1119-1127.
-
(2005)
Evolution
, vol.59
, pp. 1119-1127
-
-
Ruber, L.1
Zardoya, R.2
-
46
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne J L, Kishino H, Painter I S. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 1998, 15:1647-1657.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1647-1657
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
47
-
-
51249090287
-
Nonrandom extinction leads to elevated loss of angiosperm evolutionary history
-
Vamosi J C, Wilson J R U. Nonrandom extinction leads to elevated loss of angiosperm evolutionary history. Ecol. Lett. 2008, 11:1047-1053.
-
(2008)
Ecol. Lett.
, vol.11
, pp. 1047-1053
-
-
Vamosi, J.C.1
Wilson, J.R.U.2
-
48
-
-
34547681631
-
Global patterns of diversification and species richness in amphibians
-
Wiens J J. Global patterns of diversification and species richness in amphibians. Am. Nat. 2007, 170:S86-S106.
-
(2007)
Am. Nat.
, vol.170
-
-
Wiens, J.J.1
-
49
-
-
0027132974
-
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang Z. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 1993, 10:1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
|