Strict thermal threshold identified by quantitative PCR in the sponge Rhopaloeides odorabile

Marine Ecology Progress Series

Volumn 431, Issue , 2011, Pages 97-105

  Pantile, Raffaella ^a   Webster, Nicole ^a  

^a AUSTRALIAN INSTITUTE OF MARINE SCIENCE   (Australia)

Author keywords

Great Barrier Reef; Porifera; qPCR; Quantitative PCR; Thermal stress

Indexed keywords

BIOASSAY; BIOMARKER; ENZYME ACTIVITY; GENE EXPRESSION; HEAT SHOCK; POLYMERASE CHAIN REACTION; PROTEIN; QUANTITATIVE ANALYSIS; SAMPLING; SEA SURFACE TEMPERATURE; SPONGE; SURVIVAL; TEMPERATURE TOLERANCE;

AUSTRALIA; CORAL SEA; GREAT BARRIER REEF; PACIFIC OCEAN; QUEENSLAND;

PORIFERA; RHOPALOEIDES ODORABILE;

EID: 79958296802     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps09128     Document Type: Article

References (59)

1. Andersen CL, Jensen JL, ørntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64:5245-5250 (Pubitemid 39006544)
2. Bachinski N, Koziol C, Batel R, Labura Z, Schröder HC, Müller WEG (1997) Immediate early response of the marine sponge Suberites domuncula to heat stress: reduction of trehalose and glutathione concentrations and glutathione S-transferase activity. J Exp Mar Biol Ecol 210: 129-141
3. Baker AC (2001) Ecosystems: reef corals bleach to survive change. Nature 411:765-766 (Pubitemid 32588090)
4. Baker AC, Starger CJ, McClanahan TR, Glynn PW (2004) Coral reefs: corals' adaptive response to climate change. Nature 430:741
5. Bell JJ (2008) The functional roles of marine sponges. Estuar Coast Shelf Sci 79:341-353
6. Bell J, Neilson L, Pellegrini M (1988) Effect of heat shock on ribosome synthesis in Drosophila melanogaster. Mol Cell Biol 8:91-95
7. Blackstone NW (2001) Redox state, reactive oxygen species and adaptive growth in colonial hydroids. J Exp Biol 204: 1845-1853 (Pubitemid 34869503)
8. Bustin SA (2000) Absolute quantification of mRNA using realtime reverse transcription polymerase chain reaction assays. J Mol Endocrinol 25:169-193
9. Bustin SA (2002) Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol 29:23-39 (Pubitemid 34965744)
10. Bustin SA, Benes V, Garson JA, Hellemans J and others (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55:611-622
11. Csàszàr NBM, Seneca FO, van Oppen MJH (2009) Variation in antioxidant gene expression in the scleractinian coral Acropora millepora under laboratory thermal stress. Mar Ecol Prog Ser 392:93-102
12. De Salvo MK, Voolstra CR, Sunagawa S, Schwarz JA and others (2008) Differential gene expression during thermal stress and bleaching in the Caribbean coral Montastraea faveolata. Mol Ecol 17:3952-3971
13. Downs CA, Fauth JE, Halas JC, Dustan P, Bemiss J, Woodley CM (2002) Oxidative stress and seasonal coral bleaching. Free Radic Biol Med 33:533-543 (Pubitemid 34874974)
14. Duncan RF, Hershey JW (1989) Protein synthesis and protein phosphorylation during heat stress, recovery, and adaptation. J Cell Biol 109:1467-1481 (Pubitemid 19251204)
15. Eleutherio ECA, Araujo PS, Panek AD (1993) Protective role of trehalose during heat stress in Saccharomyces cerevisiae. Cryobiology 30:591-596
16. Feder ME, Hofmann GE (1999) Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology. Annu Rev Physiol 61:243-282 (Pubitemid 29143171)
17. Gasch AP, Spellman PT, Kao CM, Carmel-Harel O and others (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11: 4241-4257
18. Glickman MH, Ciechanover A (2002) The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction. Physiol Rev 82:373-428 (Pubitemid 34654457)
19. Goldberg AL (2003) Protein degradation and protection against misfolded or damaged proteins. Nature 426: 895-899 (Pubitemid 38056882)
20. Gracey AY, Troll JV, Somero GN (2001) Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. Proc Natl Acad Sci USA 98:1993-1998 (Pubitemid 32165611)
21. Gutierrez L, Mauriat M, Guénin S, Pelloux J and others (2008) The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcriptionpolymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnol J 6:609-618 (Pubitemid 351989484)
22. Haller F, Kulle B, Schwager S, Gunawan B, von Heydebreck A, Sultmann H, Fuzesi L (2004) Equivalence test in quantitative reverse transcription polymerase chain reaction: confirmation of reference genes suitable for normalization. Anal Biochem 335:1-9 (Pubitemid 39446224)
23. Halliwell B, Gutteridge JM (1989) Protection against oxidants in biological systems: the superoxide theory of oxygen toxicity. In: Halliwell B, Gutteridge JM (eds) Free radicals in biology and medicine. Clarendon Press, Oxford, p 86-179
24. Harrison PM, Arosio P (1996) The ferritins' molecular properties, iron storage function and cellular regulation. Biochim Biophys Acta 1275:161-203 (Pubitemid 26248989)
25. Hoegh-Guldberg O (1999) Climate change, coral bleaching and the future of the world's coral reefs. Mar Freshw Res 50:839-866 (Pubitemid 30018479)
26. Hoegh-Guldberg O, Mumby PJ, Hooten AJ, Steneck RS and others (2007) Coral reefs under rapid climate change and ocean acidification. Science 318:1737-1742
27. Hofmann GE, Place SP (2007) Genomics-enabled research in marine ecology: challenges, risks and pay-offs. Mar Ecol Prog Ser 332:249-255 (Pubitemid 46525854)
28. Hottiger T, Schmutz P, Wiemken A (1987) Heat-induced accumulation and futile cycle of trehalose in Saccharomyces cerevisiae. J Bacteriol 169:5518-5522
29. Huggett J, Dheda K, Bustin S, Zumla A (2005) Real-time RTPCR normalization; strategies and considerations. Genes Immun 6:279-284 (Pubitemid 40903399)
30. Hughes TP, Baird AH, Bellwood DR, Card M and others (2003) Climate change, human impacts and resilience of coral reefs. Science 301:929-933 (Pubitemid 36994796)
31. Jarosovà J, Kundu JK (2010) Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR. BMC Plant Biol 10: 146-154
32. Kassahn KS, Caley MJ, Ward AC, Connolly AR, Stone G, Crozier RH (2007) Heterologous microarray experiments used to identify the early gene response to heat stress in a coral reef fish. Mol Ecol 16:1749-1763 (Pubitemid 46525383)
33. Kleypas JA, Buddemeier RW, Archer D, Gattuso JP, Langdon C, Opdyke BN (1999) Geochemical consequences of increased atmospheric carbon dioxide on coral reefs. Science 284:118-120 (Pubitemid 29282059)
34. Krasko A, Scheffer U, Koziol C, Pancer Z, Batel R, Badria FA, Müller WEG (1997) Diagnosis of sublethal stress in the marine sponge Geodia cydonium: application of the 70 kDa heat-shock protein and a novel biomarker, the Rab GDP dissociation inhibitor, as probes. Aquat Toxicol 37: 157-168 (Pubitemid 27166366)
35. Li J, Qian X, Sha B (2009) Heat shock protein 40: structural studies and their functional implications. Protein Pept Lett 16:606-612
36. López-Legentil S, Song B, McMurray SE, Pawlik JR (2008) Bleaching and stress in coral reef ecosystems: hsp70 expression by the giant barrel sponge Xestospongia muta. Mol Ecol 17:1840-1849 (Pubitemid 351441704)
37. Machesky LM, Gould KL (1999) The Arp2/3 complex: a multi - functional actin organizer. Curr Opin Cell Biol 11:117-121 (Pubitemid 29084139)
38. Mieog JC, Van Oppen MJH, Berkelmans R, Stam WT, Olsen JL (2009) Quantification of algal endosymbionts (Symbiodinium) in coral tissue using real-time PCR. Mol Ecol Resour 9:74-82
39. Nicot N, Hausman JF, Hoffman L, Evers D (2005) Housekeeping genes selection for real time PCR normalization in potato during biotic and abiotic stress. J Exp Bot 56: 2907-2914 (Pubitemid 41507227)
40. Perkins EJ, Lotufo GR (2003) Playing in the mud-using gene expression to assess contaminant effects on sediment dwelling invertebrates. Ecotoxicology 12:453-456 (Pubitemid 37485476)
41. Picard D (2002) Heat-shock protein 90, a chaperone for folding and regulation. Cell Mol Life Sci 59:1640-1648 (Pubitemid 35346967)
42. Przeslawski R, Ahyong S, Byrne M, Wörheide G, Hutchings P (2008) Beyond corals and fish: the effects of climate change on non-coral benthic invertebrates of tropical reefs. Glob Change Biol 14:2773-2795
43. Ransbotyn V, Reusch TBH (2006) Housekeeping gene selection for quantitative real-time PCR assays in the seagrass Zostera marina subjected to heat stress. Limnol Oceanogr Methods 4:367-373 (Pubitemid 351774013)
44. Rowan R (2004) Coral bleaching: thermal adaptation in reef coral symbionts. Nature 430:742 (Pubitemid 39071338)
45. Rozen S, Skaletsky H (1999) Primer3 on the WWW for general users and for biologist programmers. In: Misener S, Krawetz SA (eds) Methods in molecular biology, Vol 132. Bioinformatics methods and protocols. Humana Press, New York, NY, p 365-396
46. Schallreuter KU, Gibbons NC, Zothner C, Abou Elloof MM, Wood JM (2007) Hydrogen peroxide-mediated oxidative stress disrupts calcium binding on calmodulin: more evidence for oxidative stress in vitiligo. Biochem Biophys Res Commun 360:70-75 (Pubitemid 46992795)
47. Schröder HC, Hassanein HM, Lauenroth S, Koziol C and others (1999) Induction of DNA strand breaks and expression of HSP70 and GRP78 homolog by cadmium in the marine sponge Suberites domuncula. Arch Environ Contam Toxicol 36:47-55 (Pubitemid 28565487)
48. Schröder HC, Grebenjuk VA, Binder M, Skorokhod A, Batel R, Hassanein H, Müller WEG (2004) Functional molecular biodiversity: assessing the immune status of two sponge populations (Suberites domuncula) on the molecular level. PSZN I: Mar Ecol 25:93-108 (Pubitemid 39052202)
49. Schroth W, Ender A, Schierwater B (2005) Molecular biomarkers and adaptation to environmental stress in moon jelly (Aurelia spp.). Mar Biotechnol 7:449-461 (Pubitemid 41551338)
50. Smith CJ, Osborn AM (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol Ecol 67:6-20
51. Suzuki T, Higgins PJ, Crawford DR (2000) Control selection for RNA quantitation. Biotechniques 29:332-333
52. Torti SV, Kwak EL, Miller SC, Miller LL and others (1988) The molecular cloning and characterization of murine ferritin heavy chain, a tumor necrosis factor-inducible gene. J Biol Chem 263:12638-12644 (Pubitemid 19000447)
53. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3:research0034.1-research0034.11 doi:10.1186/gb-2002- 3-7-research0034
54. Voolstra CR, Schnetzer J, Peshkin L, Randall CJ, Szmant AM, Medina M (2009) Effects of temperature on gene expression in embryos of the coral Montastraea faveolata. BMC Genomics 10:627 doi:10.1186/1471-2164-10-627
55. Wang X, Seed B (2006) High-throughput primer and probe design. In: Dorak MT (ed) Real-time PCR (BIOS-advanced methods series). Taylor & Francis, Oxford, p 93-106
56. Watanabe K, Hamamura N (2003) Molecular and physiological approaches to understanding the ecology of pollutant degradation. Curr Opin Biotechnol 14:289-295 (Pubitemid 36782658)
57. Webster NS, Cobb RE, Negri AP (2008) Temperature thresholds for bacterial symbiosis with a sponge. ISME J 2: 830-842
58. Yost HJ, Lindquist S (1986) RNA splicing is interrupted by heat shock and is rescued by heat shock protein synthesis. Cell 45:185-193 (Pubitemid 16043421)
59. Zielinski RE (1998) Calmodulin and calmodulin-binding proteins in plants. Annu Rev Plant Physiol Plant Mol Biol 49:697-725