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Volumn 16, Issue 8, 2007, Pages 1749-1763

Heterologous microarray experiments used to identify the early gene response to heat stress in a coral reef fish

Author keywords

Coral reef fish; Cross species microarray; Heat stress; Oligonucleotide microarray; Stress resistance

Indexed keywords

MESSENGER RNA;

EID: 34047185339     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.03178.x     Document Type: Article
Times cited : (82)

References (57)
  • 1
    • 15944401030 scopus 로고    scopus 로고
    • Interaction of rearing environment and reproductive tactic on gene expression profiles in Atlantic salmon
    • Aubin-Horth N, Letcher BH, Hofmann HA (2005) Interaction of rearing environment and reproductive tactic on gene expression profiles in Atlantic salmon. Journal of Heredity, 96, 261-278.
    • (2005) Journal of Heredity , vol.96 , pp. 261-278
    • Aubin-Horth, N.1    Letcher, B.H.2    Hofmann, H.A.3
  • 2
    • 13444304325 scopus 로고    scopus 로고
    • NCBI GEO: Mining millions of expression profiles - database and tools
    • Barrett T, Suzek TO, Troup DB et al. (2005) NCBI GEO: mining millions of expression profiles - database and tools. Nucleic Acids Research, 33, D562-D566.
    • (2005) Nucleic Acids Research , vol.33
    • Barrett, T.1    Suzek, T.O.2    Troup, D.B.3
  • 3
    • 0023711530 scopus 로고
    • Effect of heat shock on ribosome synthesis in Drosophila melanogaster
    • Bell J, Neilson L, Pellegrini M (1988) Effect of heat shock on ribosome synthesis in Drosophila melanogaster. Molecular and Cell Biology, 8, 91-95.
    • (1988) Molecular and Cell Biology , vol.8 , pp. 91-95
    • Bell, J.1    Neilson, L.2    Pellegrini, M.3
  • 5
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using realtime reverse transcription polymerase chain reaction assays
    • Bustin SA (2000) Absolute quantification of mRNA using realtime reverse transcription polymerase chain reaction assays. Journal of Molecular Endocrinology, 25, 169-193.
    • (2000) Journal of Molecular Endocrinology , vol.25 , pp. 169-193
    • Bustin, S.A.1
  • 6
    • 0027996845 scopus 로고
    • Evolutionary analysis of cytochrome b sequences in some Perciformes - evidence for a slower rate of evolution than in mammals
    • Cantatore P, Roberti M, Pesole G et al. (1994) Evolutionary analysis of cytochrome b sequences in some Perciformes - evidence for a slower rate of evolution than in mammals. Journal of Molecular Evolution, 39, 589-597.
    • (1994) Journal of Molecular Evolution , vol.39 , pp. 589-597
    • Cantatore, P.1    Roberti, M.2    Pesole, G.3
  • 9
    • 0035165304 scopus 로고    scopus 로고
    • Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays
    • Evertsz EM, Au-Young J, Ruvolo MV et al. (2001) Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays. BioTechniques, 31, 1182-1192.
    • (2001) BioTechniques , vol.31 , pp. 1182-1192
    • Evertsz, E.M.1    Au-Young, J.2    Ruvolo, M.V.3
  • 10
    • 12844250617 scopus 로고    scopus 로고
    • Distribution of estrogen receptor alpha mRNA in the brain and inner ear of a vocal fish with comparisons to sites of aromatase expression
    • Forlano PM, Deitcher DL, Bass ARH (2005) Distribution of estrogen receptor alpha mRNA in the brain and inner ear of a vocal fish with comparisons to sites of aromatase expression. Journal of Comparative Neurology, 483, 91-113.
    • (2005) Journal of Comparative Neurology , vol.483 , pp. 91-113
    • Forlano, P.M.1    Deitcher, D.L.2    Bass, A.R.H.3
  • 11
    • 0036090023 scopus 로고    scopus 로고
    • Interplay between molecular chaperones and signaling pathways in survival of heat shock
    • Gabai VL, Sherman MY (2002) Interplay between molecular chaperones and signaling pathways in survival of heat shock. Journal of Applied Physiology, 92, 1743-1748.
    • (2002) Journal of Applied Physiology , vol.92 , pp. 1743-1748
    • Gabai, V.L.1    Sherman, M.Y.2
  • 12
    • 0033637153 scopus 로고    scopus 로고
    • Genomic expression programs in the response of yeast cells to environmental changes
    • Gasch AP, Spellman PT, Kao CM et al. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Molecular Biology of the Cell, 11, 4241-4257.
    • (2000) Molecular Biology of the Cell , vol.11 , pp. 4241-4257
    • Gasch, A.P.1    Spellman, P.T.2    Kao, C.M.3
  • 13
    • 0034517120 scopus 로고    scopus 로고
    • Microarray analysis of developing Arabidopsis seeds
    • Girke T, Todd J, Ruuska S et al. (2000) Microarray analysis of developing Arabidopsis seeds. Plant Physiology, 124, 1570-1581.
    • (2000) Plant Physiology , vol.124 , pp. 1570-1581
    • Girke, T.1    Todd, J.2    Ruuska, S.3
  • 14
    • 0035710229 scopus 로고    scopus 로고
    • An overview of real-time quantitative PCR: Applications to quantify cytokine gene expression
    • Giulietti A, Overbergh L, Valckx D et al. (2001) An overview of real-time quantitative PCR: applications to quantify cytokine gene expression. Methods, 25, 386-401.
    • (2001) Methods , vol.25 , pp. 386-401
    • Giulietti, A.1    Overbergh, L.2    Valckx, D.3
  • 15
    • 0035852651 scopus 로고    scopus 로고
    • Gracey AY, Troll JV, Somero GN (2001) Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. Proceedings of the National Academy of Sciences, USA, 98, 1993-1998.
    • Gracey AY, Troll JV, Somero GN (2001) Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. Proceedings of the National Academy of Sciences, USA, 98, 1993-1998.
  • 16
    • 10044224489 scopus 로고    scopus 로고
    • Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate
    • Gracey AY, Fraser EJ, Li W et al. (2004) Coping with cold: an integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. Proceedings of the National Academy of Sciences, USA, 101, 16970-16975.
    • (2004) Proceedings of the National Academy of Sciences, USA , vol.101 , pp. 16970-16975
    • Gracey, A.Y.1    Fraser, E.J.2    Li, W.3
  • 17
    • 0035977490 scopus 로고    scopus 로고
    • Differential expression of adipose- and heart-type fatty acid binding proteins in hibernating ground squirrels
    • Hittel D, Storey KB (2001) Differential expression of adipose- and heart-type fatty acid binding proteins in hibernating ground squirrels. Biochimica et Biophysica Acta, 1522, 238-243.
    • (2001) Biochimica et Biophysica Acta , vol.1522 , pp. 238-243
    • Hittel, D.1    Storey, K.B.2
  • 18
    • 0033398116 scopus 로고    scopus 로고
    • Climate change, coral bleaching and the future of the world's coral reefs
    • Hoegh-Guldberg O (1999) Climate change, coral bleaching and the future of the world's coral reefs. Marine and Freshwater Research, 50, 839-866.
    • (1999) Marine and Freshwater Research , vol.50 , pp. 839-866
    • Hoegh-Guldberg, O.1
  • 19
    • 3042786293 scopus 로고    scopus 로고
    • A gene network for navigating the literature
    • Hoffmann R, Valencia A (2004) A gene network for navigating the literature. Nature Genetics, 36, 664.
    • (2004) Nature Genetics , vol.36 , pp. 664
    • Hoffmann, R.1    Valencia, A.2
  • 22
    • 18244384210 scopus 로고    scopus 로고
    • Multiple-laboratory comparison of microarray platforms
    • Irizarry RA, Warren D, Spencer F et al. (2005) Multiple-laboratory comparison of microarray platforms. Nature Methods, 2, 345-350.
    • (2005) Nature Methods , vol.2 , pp. 345-350
    • Irizarry, R.A.1    Warren, D.2    Spencer, F.3
  • 23
    • 0036384940 scopus 로고    scopus 로고
    • Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation
    • Ju Z, Dunham RA, Liu Z (2002) Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation. Molecular Genetics and Genomics, 268, 87-95.
    • (2002) Molecular Genetics and Genomics , vol.268 , pp. 87-95
    • Ju, Z.1    Dunham, R.A.2    Liu, Z.3
  • 24
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50-mer) microarrays
    • Kane M, Jatkoe T, Stumpf C et al. (2000) Assessment of the sensitivity and specificity of oligonucleotide (50-mer) microarrays. Nucleic Acids Research, 28, 4552-4557.
    • (2000) Nucleic Acids Research , vol.28 , pp. 4552-4557
    • Kane, M.1    Jatkoe, T.2    Stumpf, C.3
  • 25
    • 0029126862 scopus 로고
    • The warm temperature acclimation-related 65-Kda protein, Wap65, in goldfish and its gene-expression
    • Kikuchi K, Yamashita M, Watabe S et al. (1995) The warm temperature acclimation-related 65-Kda protein, Wap65, in goldfish and its gene-expression. Journal of Biological Chemistry, 270, 17087-17092.
    • (1995) Journal of Biological Chemistry , vol.270 , pp. 17087-17092
    • Kikuchi, K.1    Yamashita, M.2    Watabe, S.3
  • 27
    • 22044453564 scopus 로고    scopus 로고
    • Gene expression in the brain and kidney of rainbow trout in response to handling stress
    • Krasnov A, Koskinen H, Pehkonen P et al. (2005) Gene expression in the brain and kidney of rainbow trout in response to handling stress. BMC Genomics, 6.
    • (2005) BMC Genomics , vol.6
    • Krasnov, A.1    Koskinen, H.2    Pehkonen, P.3
  • 28
    • 0036049583 scopus 로고    scopus 로고
    • Function and regulation of cytosolic molecular chaperone CCT
    • Kubota H (2002) Function and regulation of cytosolic molecular chaperone CCT. Vitamins and Hormones, 65, 313-331.
    • (2002) Vitamins and Hormones , vol.65 , pp. 313-331
    • Kubota, H.1
  • 29
    • 3242810318 scopus 로고    scopus 로고
    • Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150-163.
    • Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150-163.
  • 30
    • 0036186456 scopus 로고    scopus 로고
    • Cross-hybridization of closely related genes on high-density macroarrays
    • Miller NA, Gong Q, Bryan R et al. (2002) Cross-hybridization of closely related genes on high-density macroarrays. BioTechniques, 32, 620-625.
    • (2002) BioTechniques , vol.32 , pp. 620-625
    • Miller, N.A.1    Gong, Q.2    Bryan, R.3
  • 31
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 19, 4321-4325.
    • (1980) Nucleic Acids Research , vol.19 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 32
    • 18744366950 scopus 로고    scopus 로고
    • Crossspecies microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora
    • Nowrousian M, Ringelberg C, Dunlap JC et al. (2005) Crossspecies microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora. Molecular Genetics and Genomics, 273, 137-149.
    • (2005) Molecular Genetics and Genomics , vol.273 , pp. 137-149
    • Nowrousian, M.1    Ringelberg, C.2    Dunlap, J.C.3
  • 33
    • 0037413628 scopus 로고    scopus 로고
    • A globally coherent fingerprint of climate change impacts across natural systems
    • Parmesan C, Yohe G (2003) A globally coherent fingerprint of climate change impacts across natural systems. Nature, 421, 37-42.
    • (2003) Nature , vol.421 , pp. 37-42
    • Parmesan, C.1    Yohe, G.2
  • 34
    • 0024542187 scopus 로고
    • Purification and properties of five different forms of human procarboxypeptidases
    • Pascual R, Burgos FJ, Salva M et al. (1989) Purification and properties of five different forms of human procarboxypeptidases. European Journal of Biochemistry, 179, 609-616.
    • (1989) European Journal of Biochemistry , vol.179 , pp. 609-616
    • Pascual, R.1    Burgos, F.J.2    Salva, M.3
  • 35
    • 0036581160 scopus 로고    scopus 로고
    • Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
    • Pfaffl MW, Horgan GW, Dempfle L (2002) Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Research, 30, E36-E36.
    • (2002) Nucleic Acids Research , vol.30
    • Pfaffl, M.W.1    Horgan, G.W.2    Dempfle, L.3
  • 36
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BESTKEEPER - Excel-based tool using pairwise correlations
    • Pfaffl MW, Tichopad A, Prgomet C et al. (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BESTKEEPER - Excel-based tool using pairwise correlations. Biotechnology Letters, 26, 509-515.
    • (2004) Biotechnology Letters , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3
  • 38
    • 3142533071 scopus 로고    scopus 로고
    • Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus
    • Podrabsky JE, Somero GN (2004) Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus. Journal of Experimental Biology, 207, 2237-2254.
    • (2004) Journal of Experimental Biology , vol.207 , pp. 2237-2254
    • Podrabsky, J.E.1    Somero, G.N.2
  • 39
    • 34047094349 scopus 로고    scopus 로고
    • Rambaut A (1996) SE-AL: Sequence Alignment Editor. Version 1.0 alpha 1. University of Oxford, Oxford
    • Rambaut A (1996) SE-AL: Sequence Alignment Editor. Version 1.0 alpha 1. University of Oxford, Oxford.
  • 40
    • 9444231671 scopus 로고    scopus 로고
    • Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray
    • Renn SCP, Aubin-Horth N, Hofmann HA (2004) Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics, 5.
    • (2004) BMC Genomics , vol.5
    • Renn, S.C.P.1    Aubin-Horth, N.2    Hofmann, H.A.3
  • 41
    • 12144288565 scopus 로고    scopus 로고
    • Development and application of a salmonid EST database and cDNA microarray: Data mining and interspecific hybridization characteristics
    • Rise ML, von Schalburg KR, Brown GD et al. (2004) Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Research, 14, 478-490.
    • (2004) Genome Research , vol.14 , pp. 478-490
    • Rise, M.L.1    von Schalburg, K.R.2    Brown, G.D.3
  • 42
    • 2342432868 scopus 로고    scopus 로고
    • Ontologizing gene-expression microarray data: Characterizing clusters with gene ontology
    • Robinson P, Wollstein A, Bohme U et al. (2004) Ontologizing gene-expression microarray data: characterizing clusters with gene ontology. Bioinformatics, 20, 979-981.
    • (2004) Bioinformatics , vol.20 , pp. 979-981
    • Robinson, P.1    Wollstein, A.2    Bohme, U.3
  • 43
    • 0032052770 scopus 로고    scopus 로고
    • Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences
    • Rose TM, Schultz ER, Henikoff JG et al. (1998) Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Research, 26, 1628-1635.
    • (1998) Nucleic Acids Research , vol.26 , pp. 1628-1635
    • Rose, T.M.1    Schultz, E.R.2    Henikoff, J.G.3
  • 44
    • 0043122986 scopus 로고    scopus 로고
    • Rose TM, Henikoff JG, Henikoff S (2003) CODEHOP (COnsensus-DEgenerate hybrid oligonucleotide primer) PCR primer design. Nucleic Acids Research, 31, 3763-3766.
    • Rose TM, Henikoff JG, Henikoff S (2003) CODEHOP (COnsensus-DEgenerate hybrid oligonucleotide primer) PCR primer design. Nucleic Acids Research, 31, 3763-3766.
  • 45
    • 0001813139 scopus 로고    scopus 로고
    • PRIMER3 on the WWW for general users and for biologist programmers
    • eds Krawetz S, Misener S, Humana Press, Totowa, New Jersey
    • Rozen S, Skaletsky H (2000) PRIMER3 on the WWW for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (eds Krawetz S, Misener S). Humana Press, Totowa, New Jersey.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology
    • Rozen, S.1    Skaletsky, H.2
  • 46
    • 0034532539 scopus 로고    scopus 로고
    • Environmental acclimatization of the carp modulates the transcription of beta-actin
    • Sarmiento J, Leal S, Quezada C et al. (2000) Environmental acclimatization of the carp modulates the transcription of beta-actin. Journal of Cellular Biochemistry, 80, 223-228.
    • (2000) Journal of Cellular Biochemistry , vol.80 , pp. 223-228
    • Sarmiento, J.1    Leal, S.2    Quezada, C.3
  • 47
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Article
    • Smyth G (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology, 3, Article 3.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , pp. 3
    • Smyth, G.1
  • 49
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth G, Speed T (2003) Normalization of cDNA microarray data. Methods, 31, 265-273.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.1    Speed, T.2
  • 50
    • 0036096124 scopus 로고    scopus 로고
    • Effects of heat and cold stress on mammalian gene expression
    • Sonna LA, Fujita J, Gaffin SL et al. (2002) Effects of heat and cold stress on mammalian gene expression. Journal of Applied Physiology, 92, 1725-1742.
    • (2002) Journal of Applied Physiology , vol.92 , pp. 1725-1742
    • Sonna, L.A.1    Fujita, J.2    Gaffin, S.L.3
  • 51
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nature Genetics, 25, 25-29.
    • (2000) Nature Genetics , vol.25 , pp. 25-29
  • 52
    • 0035181665 scopus 로고    scopus 로고
    • Tsai J, Sultana R, Lee Y et al. (2001) RESOURCERER: a database for annotating and linking microarray resources within and across species. Genome Biology, 2, software0002.0001-0002.0004.
    • Tsai J, Sultana R, Lee Y et al. (2001) RESOURCERER: a database for annotating and linking microarray resources within and across species. Genome Biology, 2, software0002.0001-0002.0004.
  • 53
    • 1642482773 scopus 로고    scopus 로고
    • Use of human cDNA microarrays for identification of differentially expressed genes in Atlantic salmon liver during Aeromonas salmonicida infection
    • Tsoi SCM, Cale JM, Bird IM et al. (2003) Use of human cDNA microarrays for identification of differentially expressed genes in Atlantic salmon liver during Aeromonas salmonicida infection. Marine Biotechnology, 5, 545-554.
    • (2003) Marine Biotechnology , vol.5 , pp. 545-554
    • Tsoi, S.C.M.1    Cale, J.M.2    Bird, I.M.3
  • 54
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes, research0034.0031-0034.0011
    • Vandesompele J, De Preter K, Pattyn F et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology, 3, research0034.0031-0034.0011.
    • (2002) Genome Biology , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3
  • 56
    • 0042433120 scopus 로고    scopus 로고
    • A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus)
    • Williams TD, Gensberg K, Minchin SD et al. (2003) A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus). Aquatic Toxicology, 65, 141-157.
    • (2003) Aquatic Toxicology , vol.65 , pp. 141-157
    • Williams, T.D.1    Gensberg, K.2    Minchin, S.D.3


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