A conserved residue in the yeast Bem1p SH3 domain maintains the high level of binding specificity required for function

Journal of Biological Chemistry

Volumn 286, Issue 22, 2011, Pages 19470-19477

  Gorelik, Maryna ^a   Stanger, Karen ^a   Davidson, Alan R ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SPECIFICITIES; CONSENSUS SEQUENCE; CONSERVED RESIDUES; IN-VIVO; INTRINSIC BINDING; NON-SPECIFIC INTERACTIONS; PROTEIN-PROTEIN INTERACTIONS; SEQUENCE SIMILARITY;

PEPTIDES;

YEAST;

ADAPTOR PROTEIN; PEPTIDE; PROTEIN BEM1P; PROTEIN NBP2P; PROTEIN SH3; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CONSENSUS SEQUENCE; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; TITRIMETRY; YEAST;

ADAPTOR PROTEINS, SIGNAL TRANSDUCING; PEPTIDES; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SRC HOMOLOGY DOMAINS;

EID: 79957604998     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.229294     Document Type: Article

References (42)

1. Jen-Jacobson, L. (1997) Biopolymers 44, 153-180
2. Bhattacharyya, R. P., Remenyi, A., Yeh, B. J., and Lim, W. A. (2006) Annu. Rev. Biochem.
3. Castagnoli, L., Costantini, A., Dall'Armi, C., Gonfloni, S., Montecchi-Palazzi, L., Panni, S., Paoluzi, S., Santonico, E., and Cesareni, G. (2004) FEBS Lett. 567, 74-79
4. Pawson, T. (2007) Curr. Opin Cell Biol. 19, 112-116
5. Dalgarno, D. C., Botfield, M. C., and Rickles, R. J. (1997) Biopolymers 43, 383-400
6. Zarrinpar, A., Bhattacharyya, R. P., and Lim, W. A. (2003) Sci. STKE 2003, RE8
7. Viguera, A. R., Arrondo, J. L., Musacchio, A., Saraste, M., and Serrano, L. (1994) Biochemistry 33, 10925-10933
8. Cussac, D., Frech, M., and Chardin, P. (1994) EMBO J. 13, 4011-4021
9. Feller, S. M., Knudsen, B., and Hanafusa, H. (1995) Oncogene 10, 1465-1473
10. Kaneko, T., Kumasaka, T., Ganbe, T., Sato, T., Miyazawa, K., Kitamura, N., and Tanaka, N. (2003) J. Biol. Chem. 278, 48162-48168
11. Landgraf, C., Panni, S., Montecchi-Palazzi, L., Castagnoli, L., Schneider-Mergener, J., Volkmer-Engert, R., and Cesareni, G. (2004) PLoS Biol. 2, E14
12. Ladbury, J. E., and Arold, S. (2000) Chem. Biol. 7, R3-8
13. Mayer, B. J. (2001) J. Cell Sci. 114, 1253-1263
14. Li, S. S. (2005) Biochem. J. 390, 641-653
15. Zarrinpar, A., Park, S. H., and Lim, W. A. (2003) Nature 426, 676-680
16. Ghose, R., Shekhtman, A., Goger, M. J., Ji, H., and Cowburn, D. (2001) Nat. Struct. Biol. 8, 998-1004
17. Kami, K., Takeya, R., Sumimoto, H., and Kohda, D. (2002) EMBO J. 21, 4268-4276
18. Lewitzky, M., Harkiolaki, M., Domart, M. C., Jones, E. Y., and Feller, S. M. (2004) J. Biol. Chem. 279, 28724-28732
19. Bauer, F., Schweimer, K., Meiselbach, H., Hoffmann, S., Rösch, P., and Sticht, H. (2005) Protein Sci. 14, 2487-2498
20. Hoelz, A., Janz, J. M., Lawrie, S. D., Corwin, B., Lee, A., and Sakmar, T. P. (2006) J. Mol. Biol. 358, 509-522
21. Larson, S. M., and Davidson, A. R. (2000) Protein Sci. 9, 2170-2180
22. Du, Y., Walker, L., Novick, P., and Ferro-Novick, S. (2006) EMBO J. 25, 4413-4422
23. Mapes, J., and Ota, I. M. (2004) EMBO J. 23, 302-311
24. Hruby, A., Zapatka, M., Heucke, S., Rieger, L., Wu, Y., Nussbaumer, U., Timmermann, S., Dünkler, A., and Johnsson, N. (2011) J. Cell Sci. 124, 35-46
25. Bender, L., Lo, H. S., Lee, H., Kokojan, V., Peterson, V., and Bender, A. (1996) J. Cell Biol. 133, 879-894
26. Irazoqui, J. E., Gladfelter, A. S., and Lew, D. J. (2003) Nat. Cell Biol. 5, 1062-1070
27. Bose, I., Irazoqui, J. E., Moskow, J. J., Bardes, E. S., Zyla, T. R., and Lew, D. J. (2001) J. Biol. Chem. 276, 7176-7186
28. Gulli, M. P., Jaquenoud, M., Shimada, Y., Niederhäuser, G., Wiget, P., and Peter, M. (2000) Mol. Cell 6, 1155-1167
29. Kozubowski, L., Saito, K., Johnson, J. M., Howell, A. S., Zyla, T. R., and Lew, D. J. (2008) Curr. Biol. 18, 1719-1726
30. Winters, M. J., and Pryciak, P. M. (2005) Mol. Cell. Biol. 25, 2177-2190
31. Tong, A. H., Drees, B., Nardelli, G., Bader, G. D., Brannetti, B., Castagnoli, L., Evangelista, M., Ferracuti, S., Nelson, B., Paoluzi, S., Quondam, M., Zucconi, A., Hogue, C. W., Fields, S., Boone, C., and Cesareni, G. (2002) Science 295, 321-324
32. Takaku, T., Ogura, K., Kumeta, H., Yoshida, N., and Inagaki, F. (2010) J. Biol. Chem. 285, 19346-19353
33. Maxwell, K. L., and Davidson, A. R. (1998) Biochemistry 37, 16172-16182
34. Longtine, M. S., McKenzie, A., 3rd, Demarini, D. J., Shah, N. G., Wach, A., Brachat, A., Philippsen, P., and Pringle, J. R. (1998) Yeast 14, 953-961
35. Hiipakka, M., and Saksela, K. (2007) FEBS Lett. 581, 1735-1741
36. Panni, S., Dente, L., and Cesareni, G. (2002) J. Biol. Chem. 277, 21666-21674
37. Ohkuni, K., Okuda, A., and Kikuchi, A. (2003) Genetics 165, 517-529
38. Tong, A. H., Lesage, G., Bader, G. D., Ding, H., Xu, H., Xin, X., Young, J., Berriz, G. F., Brost, R. L., Chang, M., Chen, Y., Cheng, X., Chua, G., Friesen, H., Goldberg, D. S., Haynes, J., Humphries, C., He, G., Hussein, S., Ke, L., Krogan, N., Li, Z., Levinson, J. N., Lu, H., Ménard, P., Munyana, C., Parsons, A. B., Ryan, O., Tonikian, R., Roberts, T., Sdicu, A. M., Shapiro, J., Sheikh, B., Suter, B., Wong, S. L., Zhang, L. V., Zhu, H., Burd, C. G., Munro, S., Sander, C., Rine, J., Greenblatt, J., Peter, M., Bretscher, A., Bell, G., Roth, F. P., Brown, G. W., Andrews, B., Bussey, H., and Boone, C. (2004) Science 303, 808-813
39. Fazi, B., Cope, M. J., Douangamath, A., Ferracuti, S., Schirwitz, K., Zucconi, A., Drubin, D. G., Wilmanns, M., Cesareni, G., and Castagnoli, L. (2002) J. Biol. Chem. 277, 5290-5298
40. Seet, B. T., Berry, D. M., Maltzman, J. S., Shabason, J., Raina, M., Koretzky, G. A., McGlade, C. J., and Pawson, T. (2007) EMBO J. 26, 678-689
41. Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K., and Weissman, J. S. (2003) Nature 425, 737-741
42. Lim, W. A., Richards, F. M., and Fox, R. O. (1994) Nature 372, 375-379