메뉴 건너뛰기




Volumn 124, Issue 1, 2011, Pages 35-46

A constraint network of interactions: Protein-protein interaction analysis of the yeast type II phosphatase Ptc1p and its adaptor protein Nbp2p

Author keywords

Constraint interaction network; Organelle inheritance; Polarized growth; Protein kinase; Protein phosphatase; Protein protein interaction; Systems biology

Indexed keywords

ADAPTOR PROTEIN; FUNGAL ENZYME; PHOSPHOTRANSFERASE; PROTEIN NBP2P; PROTEIN SH3; PTC1P ENZYME; UNCLASSIFIED DRUG;

EID: 78651081485     PISSN: 00219533     EISSN: 14779137     Source Type: Journal    
DOI: 10.1242/jcs.077065     Document Type: Article
Times cited : (28)

References (53)
  • 1
    • 0030989560 scopus 로고    scopus 로고
    • Aip3p/Bud6p, a yeast actin-interacting protein that is involved in morphogenesis and the selection of bipolar budding sites
    • Amberg, D. C., Zahner, J. E., Mulholland, J. W., Pringle, J. R. and Botstein, D. (1997). Aip3p/Bud6p, a yeast actin-interacting protein that is involved in morphogenesis and the selection of bipolar budding sites. Mol. Biol. Cell 8, 729-753.
    • (1997) Mol. Biol. Cell , vol.8 , pp. 729-753
    • Amberg, D.C.1    Zahner, J.E.2    Mulholland, J.W.3    Pringle, J.R.4    Botstein, D.5
  • 2
    • 0033555685 scopus 로고    scopus 로고
    • Nim1-related kinases coordinate cell cycle progression with the organization of the peripheral cytoskeleton in yeast
    • Barral, Y., Parra, M., Bidlingmaier, S. and Snyder, M. (1999). Nim1-related kinases coordinate cell cycle progression with the organization of the peripheral cytoskeleton in yeast. Genes Dev. 13, 176-187.
    • (1999) Genes Dev. , vol.13 , pp. 176-187
    • Barral, Y.1    Parra, M.2    Bidlingmaier, S.3    Snyder, M.4
  • 3
    • 64749100111 scopus 로고    scopus 로고
    • p21-activated kinases Cla4 and Ste20 regulate vacuole inheritance in Saccharomyces cerevisiae
    • Bartholomew, C. R. and Hardy, C. F. (2009). p21-activated kinases Cla4 and Ste20 regulate vacuole inheritance in Saccharomyces cerevisiae. Eukaryotic Cell 8, 560-572.
    • (2009) Eukaryotic Cell , vol.8 , pp. 560-572
    • Bartholomew, C.R.1    Hardy, C.F.2
  • 4
    • 0035831555 scopus 로고    scopus 로고
    • Assembly of Scaffold-mediated Complexes Containing Cdc42p, the Exchange Factor Cdc24p, and the Effector Cla4p Required for Cell Cycle-regulated Phosphorylation of Cdc24p
    • DOI 10.1074/jbc.M010546200
    • Bose, I., Irazoqui, J. E., Moskow, J. J., Bardes, E. S., Zyla, T. R. and Lew, D. J. (2001). Assembly of scaffold-mediated complexes containing Cdc42p, the exchange factor Cdc24p, and the effector Cla4p required for cell cycle-regulated phosphorylation of Cdc24p. J. Biol. Chem. 276, 7176-7186. (Pubitemid 33648136)
    • (2001) Journal of Biological Chemistry , vol.276 , Issue.10 , pp. 7176-7186
    • Bose, I.1    Irazoqui, J.E.2    Moskow, J.J.3    Bardes, E.S.G.4    Zyla, T.R.5    Lew, D.J.6
  • 7
    • 0028157519 scopus 로고
    • MSG5, a novel protein phosphatase promotes adaptation to pheromone response in S. cerevisiae
    • Doi, K., Gartner, A., Ammerer, G., Errede, B., Shinkawa, H., Sugimoto, K. and Matsumoto, K. (1994). MSG5, a novel protein phosphatase promotes adaptation to pheromone response in S. cerevisiae. EMBO J. 13, 61-70.
    • (1994) EMBO J. , vol.13 , pp. 61-70
    • Doi, K.1    Gartner, A.2    Ammerer, G.3    Errede, B.4    Shinkawa, H.5    Sugimoto, K.6    Matsumoto, K.7
  • 9
    • 33749364913 scopus 로고    scopus 로고
    • Ptc1p regulates cortical ER inheritance via Slt2p
    • Du, Y., Walker, L., Novick, P. and Ferro-Novick, S. (2006). Ptc1p regulates cortical ER inheritance via Slt2p. EMBO J. 25, 4413-4422.
    • (2006) EMBO J. , vol.25 , pp. 4413-4422
    • Du, Y.1    Walker, L.2    Novick, P.3    Ferro-Novick, S.4
  • 10
    • 0041827355 scopus 로고    scopus 로고
    • Pex10p links the ubiquitin conjugating enzyme Pex4p to the protein import machinery of the peroxisome
    • Eckert, J. H. and Johnsson, N. (2003). Pex10p links the ubiquitin conjugating enzyme Pex4p to the protein import machinery of the peroxisome. J. Cell Sci. 116, 3623-3634.
    • (2003) J. Cell Sci. , vol.116 , pp. 3623-3634
    • Eckert, J.H.1    Johnsson, N.2
  • 11
    • 33947493108 scopus 로고    scopus 로고
    • A chemogenomic screen in Saccharomyces cerevisiae uncovers a primary role for the mitochondria in farnesol toxicity and its regulation by the Pkc1 pathway
    • Fairn, G. D., Macdonald, K. and McMaster, C. R. (2007). A chemogenomic screen in Saccharomyces cerevisiae uncovers a primary role for the mitochondria in farnesol toxicity and its regulation by the Pkc1 pathway. J. Biol. Chem. 282, 4868-4874.
    • (2007) J. Biol. Chem. , vol.282 , pp. 4868-4874
    • Fairn, G.D.1    Macdonald, K.2    McMaster, C.R.3
  • 14
    • 71149097450 scopus 로고    scopus 로고
    • Control of high osmolarity signalling in the yeast Saccharomyces cerevisiae
    • Hohmann, S. (2009). Control of high osmolarity signalling in the yeast Saccharomyces cerevisiae. FEBS Lett. 583, 4025-4029.
    • (2009) FEBS Lett. , vol.583 , pp. 4025-4029
    • Hohmann, S.1
  • 15
    • 4444271170 scopus 로고    scopus 로고
    • A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes
    • Janke, C., Magiera, M. M., Rathfelder, N., Taxis, C., Reber, S., Maekawa, H., Moreno-Borchart, A., Doenges, G., Schwob, E., Schiebel, E. et al. (2004). A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast 21, 947-962.
    • (2004) Yeast , vol.21 , pp. 947-962
    • Janke, C.1    Magiera, M.M.2    Rathfelder, N.3    Taxis, C.4    Reber, S.5    Maekawa, H.6    Moreno-Borchart, A.7    Doenges, G.8    Schwob, E.9    Schiebel, E.10
  • 16
    • 65249099634 scopus 로고    scopus 로고
    • PTC1 is required for vacuole inheritance and promotes the association of the myosin-V vacuole-specific receptor complex
    • Jin, Y., Taylor Eves, P., Tang, F. and Weisman, L. S. (2009). PTC1 is required for vacuole inheritance and promotes the association of the myosin-V vacuole-specific receptor complex. Mol. Biol. Cell 20, 1312-1323.
    • (2009) Mol. Biol. Cell , vol.20 , pp. 1312-1323
    • Jin, Y.1    Taylor Eves, P.2    Tang, F.3    Weisman, L.S.4
  • 18
    • 0037371660 scopus 로고    scopus 로고
    • Identification of p21-activated kinase specificity determinants in budding yeast: A single amino acid substitution imparts Ste20 specificity to Cla4
    • Keniry, M. E. and Sprague, G. F., Jr (2003). Identification of p21-activated kinase specificity determinants in budding yeast: a single amino acid substitution imparts Ste20 specificity to Cla4. Mol. Cell. Biol. 23, 1569-1580.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 1569-1580
    • Keniry, M.E.1    Sprague Jr., G.F.2
  • 19
    • 0032775010 scopus 로고    scopus 로고
    • Epitope tagging of yeast genes using a PCR-based strategy: More tags and improved practical routines
    • Knop, M., Siegers, K., Pereira, G., Zachariae, W., Winsor, B., Nasmyth, K. and Schiebel, E. (1999). Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines. Yeast 15, 963-972.
    • (1999) Yeast , vol.15 , pp. 963-972
    • Knop, M.1    Siegers, K.2    Pereira, G.3    Zachariae, W.4    Winsor, B.5    Nasmyth, K.6    Schiebel, E.7
  • 20
    • 33748316457 scopus 로고    scopus 로고
    • The novel F-box protein Mfb1p regulates mitochondrial connectivity and exhibits asymmetric localization in yeast
    • Kondo-Okamoto, N., Ohkuni, K., Kitagawa, K., McCaffery, J. M., Shaw, J. M. and Okamoto, K. (2006). The novel F-box protein Mfb1p regulates mitochondrial connectivity and exhibits asymmetric localization in yeast. Mol. Biol. Cell 17, 3756-3767.
    • (2006) Mol. Biol. Cell , vol.17 , pp. 3756-3767
    • Kondo-Okamoto, N.1    Ohkuni, K.2    Kitagawa, K.3    McCaffery, J.M.4    Shaw, J.M.5    Okamoto, K.6
  • 23
    • 0026584373 scopus 로고
    • Dominant mutations in a gene encoding a putative protein kinase (BCK1) bypass the requirement for a Saccharomyces cerevisiae protein kinase C homolog
    • Lee, K. S. and Levin, D. E. (1992). Dominant mutations in a gene encoding a putative protein kinase (BCK1) bypass the requirement for a Saccharomyces cerevisiae protein kinase C homolog. Mol. Cell. Biol. 12, 172-182.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 172-182
    • Lee, K.S.1    Levin, D.E.2
  • 25
    • 2942620604 scopus 로고    scopus 로고
    • Analysis of beta-1,3-glucan assembly in Saccharomyces cerevisiae using a synthetic interaction network and altered sensitivity to caspofungin
    • Lesage, G., Sdicu, A. M., Menard, P., Shapiro, J., Hussein, S. and Bussey, H. (2004). Analysis of beta-1,3-glucan assembly in Saccharomyces cerevisiae using a synthetic interaction network and altered sensitivity to caspofungin. Genetics 167, 35-49.
    • (2004) Genetics , vol.167 , pp. 35-49
    • Lesage, G.1    Sdicu, A.M.2    Menard, P.3    Shapiro, J.4    Hussein, S.5    Bussey, H.6
  • 26
    • 20544432791 scopus 로고    scopus 로고
    • Cell wall integrity signaling in Saccharomyces cerevisiae
    • Levin, D. E. (2005). Cell wall integrity signaling in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 69, 262-291.
    • (2005) Microbiol. Mol. Biol. Rev. , vol.69 , pp. 262-291
    • Levin, D.E.1
  • 27
    • 48749114997 scopus 로고    scopus 로고
    • A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation
    • Lin, Y. Y., Qi, Y., Lu, J. Y., Pan, X., Yuan, D. S., Zhao, Y., Bader, J. S. and Boeke, J. D. (2008). A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Genes Dev. 22, 2062-2074.
    • (2008) Genes Dev. , vol.22 , pp. 2062-2074
    • Lin, Y.Y.1    Qi, Y.2    Lu, J.Y.3    Pan, X.4    Yuan, D.S.5    Zhao, Y.6    Bader, J.S.7    Boeke, J.D.8
  • 28
    • 35748968807 scopus 로고    scopus 로고
    • Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling
    • Maeder, C. I., Hink, M. A., Kinkhabwala, A., Mayr, R., Bastiaens, P. I. and Knop, M. (2007). Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling. Nat. Cell Biol. 9, 1319-1326.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 1319-1326
    • Maeder, C.I.1    Hink, M.A.2    Kinkhabwala, A.3    Mayr, R.4    Bastiaens, P.I.5    Knop, M.6
  • 29
    • 1542290673 scopus 로고    scopus 로고
    • Nbp2 targets the Ptc1-type 2C Ser/Thr phosphatase to the HOG MAPK pathway
    • Mapes, J. and Ota, I. M. (2004). Nbp2 targets the Ptc1-type 2C Ser/Thr phosphatase to the HOG MAPK pathway. EMBO J. 23, 302-311.
    • (2004) EMBO J. , vol.23 , pp. 302-311
    • Mapes, J.1    Ota, I.M.2
  • 30
    • 71049147069 scopus 로고    scopus 로고
    • Septins: Molecular partitioning and the generation of cellular asymmetry
    • McMurray, M. A. and Thorner, J. (2009). Septins: molecular partitioning and the generation of cellular asymmetry. Cell Div. 4, 18.
    • (2009) Cell Div. , vol.4 , pp. 18
    • McMurray, M.A.1    Thorner, J.2
  • 32
    • 54349115675 scopus 로고    scopus 로고
    • Split-ubiquitin and the split-protein sensors: Chessman for the endgame
    • Müller, J. and Johnsson, N. (2008). Split-ubiquitin and the split-protein sensors: chessman for the endgame. Chembiochem 9, 2029-2038.
    • (2008) Chembiochem , vol.9 , pp. 2029-2038
    • Müller, J.1    Johnsson, N.2
  • 33
    • 0242349716 scopus 로고    scopus 로고
    • Yeast Nap1-Binding Protein Nbp2p Is Required for Mitotic Growth at High Temperatures and for Cell Wall Integrity
    • Ohkuni, K., Okuda, A. and Kikuchi, A. (2003). Yeast Nap1-binding protein Nbp2p is required for mitotic growth at high temperatures and for cell wall integrity. Genetics 165, 517-529. (Pubitemid 37337621)
    • (2003) Genetics , vol.165 , Issue.2 , pp. 517-529
    • Ohkuni, K.1    Okuda, A.2    Kikuchi, A.3
  • 34
    • 0038660114 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae bud-neck proteins Kcc4 and Gin4 have distinct but partially-overlapping cellular functions
    • Okuzaki, D., Watanabe, T., Tanaka, S. and Nojima, H. (2003). The Saccharomyces cerevisiae bud-neck proteins Kcc4 and Gin4 have distinct but partially-overlapping cellular functions. Genes Genet. Syst. 78, 113-126.
    • (2003) Genes Genet. Syst. , vol.78 , pp. 113-126
    • Okuzaki, D.1    Watanabe, T.2    Tanaka, S.3    Nojima, H.4
  • 35
    • 33644778778 scopus 로고    scopus 로고
    • A DNA integrity network in the yeast Saccharomyces cerevisiae
    • Pan, X., Ye, P., Yuan, D. S., Wang, X., Bader, J. S. and Boeke, J. D. (2006). A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 124, 1069-1081.
    • (2006) Cell , vol.124 , pp. 1069-1081
    • Pan, X.1    Ye, P.2    Yuan, D.S.3    Wang, X.4    Bader, J.S.5    Boeke, J.D.6
  • 36
    • 34147167177 scopus 로고    scopus 로고
    • Mapping protein-protein interactions for the yeast ABC transporter Ycf1p by integrated split-ubiquitin membrane yeast two-hybrid analysis
    • Paumi, C. M., Menendez, J., Arnoldo, A., Engels, K., Iyer, K. R., Thaminy, S., Georgiev, O., Barral, Y., Michaelis, S. and Stagljar, I. (2007). Mapping protein-protein interactions for the yeast ABC transporter Ycf1p by integrated split-ubiquitin membrane yeast two-hybrid analysis. Mol. Cell 26, 15-25.
    • (2007) Mol. Cell , vol.26 , pp. 15-25
    • Paumi, C.M.1    Menendez, J.2    Arnoldo, A.3    Engels, K.4    Iyer, K.R.5    Thaminy, S.6    Georgiev, O.7    Barral, Y.8    Michaelis, S.9    Stagljar, I.10
  • 38
    • 0035951310 scopus 로고    scopus 로고
    • Detection of altered protein conformations in living cells
    • Raquet, X., Eckert, J. H., Müller, S. and Johnsson, N. (2001). Detection of altered protein conformations in living cells. J. Mol. Biol. 305, 927-938.
    • (2001) J. Mol. Biol. , vol.305 , pp. 927-938
    • Raquet, X.1    Eckert, J.H.2    Müller, S.3    Johnsson, N.4
  • 39
    • 2442605728 scopus 로고    scopus 로고
    • TOR complex 1 includes a novel component, Tco89p (YPL180w), and cooperates with Ssd1p to maintain cellular integrity in Saccharomyces cerevisiae
    • Reinke, A., Anderson, S., McCaffery, J. M., Yates, J., 3rd, Aronova, S., Chu, S., Fairclough, S., Iverson, C., Wedaman, K. P. and Powers, T. (2004). TOR complex 1 includes a novel component, Tco89p (YPL180w), and cooperates with Ssd1p to maintain cellular integrity in Saccharomyces cerevisiae. J. Biol. Chem. 279, 14752-14762.
    • (2004) J. Biol. Chem. , vol.279 , pp. 14752-14762
    • Reinke, A.1    Anderson, S.2    McCaffery, J.M.3    Yates III, J.4    Aronova, S.5    Chu, S.6    Fairclough, S.7    Iverson, C.8    Wedaman, K.P.9    Powers, T.10
  • 40
    • 29144502234 scopus 로고    scopus 로고
    • The role of docking interactions in mediating signaling input, output, and discrimination in the yeast MAPK network
    • Remenyi, A., Good, M. C., Bhattacharyya, R. P. and Lim, W. A. (2005). The role of docking interactions in mediating signaling input, output, and discrimination in the yeast MAPK network. Mol. Cell 20, 951-962.
    • (2005) Mol. Cell , vol.20 , pp. 951-962
    • Remenyi, A.1    Good, M.C.2    Bhattacharyya, R.P.3    Lim, W.A.4
  • 41
    • 0031921170 scopus 로고    scopus 로고
    • Mitochondrial inheritance is delayed in Saccharomyces cerevisiae cells lacking the serine/threonine phosphatase PTC1
    • Roeder, A. D., Hermann, G. J., Keegan, B. R., Thatcher, S. A. and Shaw, J. M. (1998). Mitochondrial inheritance is delayed in Saccharomyces cerevisiae cells lacking the serine/threonine phosphatase PTC1. Mol. Biol. Cell 9, 917-930.
    • (1998) Mol. Biol. Cell , vol.9 , pp. 917-930
    • Roeder, A.D.1    Hermann, G.J.2    Keegan, B.R.3    Thatcher, S.A.4    Shaw, J.M.5
  • 42
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
    • Sikorski, R. S. and Hieter, P. (1989). A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122, 19-27.
    • (1989) Genetics , vol.122 , pp. 19-27
    • Sikorski, R.S.1    Hieter, P.2
  • 44
    • 0032504990 scopus 로고    scopus 로고
    • Control of mitotic events by the Cdc42 GTPase, the Clb2 cyclin and a member of the PAK kinase family
    • Tjandra, H., Compton, J. and Kellogg, D. (1998). Control of mitotic events by the Cdc42 GTPase, the Clb2 cyclin and a member of the PAK kinase family. Curr. Biol. 8, 991-1000.
    • (1998) Curr. Biol. , vol.8 , pp. 991-1000
    • Tjandra, H.1    Compton, J.2    Kellogg, D.3
  • 49
    • 0036794109 scopus 로고    scopus 로고
    • Spa2p functions as a scaffold-like protein to recruit the Mpk1p MAP kinase module to sites of polarized growth
    • van Drogen, F. and Peter, M. (2002). Spa2p functions as a scaffold-like protein to recruit the Mpk1p MAP kinase module to sites of polarized growth. Curr. Biol. 12, 1698-1703.
    • (2002) Curr. Biol. , vol.12 , pp. 1698-1703
    • Van Drogen, F.1    Peter, M.2
  • 50
    • 14844349236 scopus 로고    scopus 로고
    • Interaction with the SH3 domain protein Bem1 regulates signaling by the Saccharomyces cerevisiae p21-activated kinase Ste20
    • Winters, M. J. and Pryciak, P. M. (2005). Interaction with the SH3 domain protein Bem1 regulates signaling by the Saccharomyces cerevisiae p21-activated kinase Ste20. Mol. Cell. Biol. 25, 2177-2190.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 2177-2190
    • Winters, M.J.1    Pryciak, P.M.2
  • 51
    • 0032803068 scopus 로고    scopus 로고
    • Probing the molecular environment of membrane proteins in vivo
    • Wittke, S., Lewke, N., Müller, S. and Johnsson, N. (1999). Probing the molecular environment of membrane proteins in vivo. Mol. Biol. Cell, 10, 2519-2530.
    • (1999) Mol. Biol. Cell , vol.10 , pp. 2519-2530
    • Wittke, S.1    Lewke, N.2    Müller, S.3    Johnsson, N.4
  • 52
    • 0033738377 scopus 로고    scopus 로고
    • Sec62p, a component of the endoplasmic reticulum protein translocation machinery, contains multiple binding sites for the Sec-complex
    • Wittke, S., Dunnwald, M. and Johnsson, N. (2000). Sec62p, a component of the endoplasmic reticulum protein translocation machinery, contains multiple binding sites for the Sec-complex. Mol. Biol. Cell. 11, 3859-3871.
    • (2000) Mol. Biol. Cell. , vol.11 , pp. 3859-3871
    • Wittke, S.1    Dunnwald, M.2    Johnsson, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.