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Volumn 80, Issue 5, 2011, Pages 1137-1147

Analysis of RNA localization and metabolism in single live bacterial cells: Achievements and challenges

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; FRAGILE X MENTAL RETARDATION PROTEIN; INITIATION FACTOR 4A; MESSENGER RNA; PROTEIN MS2; RIBONUCLEASE E; RNA; RNA 5S; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

EID: 79957469880     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2011.07652.x     Document Type: Review
Times cited : (24)

References (93)
  • 1
    • 34447269248 scopus 로고    scopus 로고
    • In vivo visualization of actin dynamics and actin interactions by BiFC
    • Anderie, I., and Schmid, A. (2007) In vivo visualization of actin dynamics and actin interactions by BiFC. Cell Biol Int 31: 1131-1135.
    • (2007) Cell Biol Int , vol.31 , pp. 1131-1135
    • Anderie, I.1    Schmid, A.2
  • 2
    • 0344430112 scopus 로고    scopus 로고
    • Aptamers switch on fluorescence of triphenylmethane dyes
    • Babendure, J.R., Adams, S.R., and Tsien, R.Y. (2003) Aptamers switch on fluorescence of triphenylmethane dyes. J Am Chem Soc 125: 14716-14717.
    • (2003) J Am Chem Soc , vol.125 , pp. 14716-14717
    • Babendure, J.R.1    Adams, S.R.2    Tsien, R.Y.3
  • 3
    • 0033519623 scopus 로고    scopus 로고
    • Localization and anchoring of mRNA in budding yeast
    • Beach, D.L., Salmon, E.D., and Bloom, K. (1999) Localization and anchoring of mRNA in budding yeast. Curr Biol 9: 569-578.
    • (1999) Curr Biol , vol.9 , pp. 569-578
    • Beach, D.L.1    Salmon, E.D.2    Bloom, K.3
  • 4
    • 0037162469 scopus 로고    scopus 로고
    • Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    • Bernstein, J.A., Khodursky, A.B., Lin, P.H., Lin-Chao, S., and Cohen, S.N. (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci USA 99: 9697-9702.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9697-9702
    • Bernstein, J.A.1    Khodursky, A.B.2    Lin, P.H.3    Lin-Chao, S.4    Cohen, S.N.5
  • 9
    • 27144515901 scopus 로고    scopus 로고
    • Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies
    • Brengues, M., Teixeira, D., and Parker, R. (2005) Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310: 486-489.
    • (2005) Science , vol.310 , pp. 486-489
    • Brengues, M.1    Teixeira, D.2    Parker, R.3
  • 10
    • 0034544815 scopus 로고    scopus 로고
    • Pre-mRNA processing factors are required for nuclear export
    • Brodsky, A.S., and Silver, P.A. (2000) Pre-mRNA processing factors are required for nuclear export. RNA 6: 1737-1749.
    • (2000) RNA , vol.6 , pp. 1737-1749
    • Brodsky, A.S.1    Silver, P.A.2
  • 11
    • 33645027986 scopus 로고    scopus 로고
    • Stochastic protein expression in individual cells at the single molecule level
    • Cai, L., Friedman, N., and Xie, X.S. (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-362.
    • (2006) Nature , vol.440 , pp. 358-362
    • Cai, L.1    Friedman, N.2    Xie, X.S.3
  • 12
    • 35548995356 scopus 로고    scopus 로고
    • The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E
    • Carpousis, A.J. (2007) The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E. Annu Rev Microbiol 61: 71-87.
    • (2007) Annu Rev Microbiol , vol.61 , pp. 71-87
    • Carpousis, A.J.1
  • 13
    • 0034700086 scopus 로고    scopus 로고
    • Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase
    • Caruthers, J.M., Johnson, E.R., and McKay, D.B. (2000) Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase. Proc Natl Acad Sci USA 97: 13080-13085.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 13080-13085
    • Caruthers, J.M.1    Johnson, E.R.2    McKay, D.B.3
  • 14
    • 33646591544 scopus 로고    scopus 로고
    • Transcriptional pulsing of a developmental gene
    • Chubb, J.R., Trcek, T., Shenoy, S.M., and Singer, R.H. (2006) Transcriptional pulsing of a developmental gene. Curr Biol 16: 1018-1025.
    • (2006) Curr Biol , vol.16 , pp. 1018-1025
    • Chubb, J.R.1    Trcek, T.2    Shenoy, S.M.3    Singer, R.H.4
  • 15
    • 77955640606 scopus 로고    scopus 로고
    • Fluorescent proteins and their applications in imaging living cells and tissues
    • Chudakov, D.M., Matz, M.V., Lukyanov, S., and Lukyanov, K.A. (2010) Fluorescent proteins and their applications in imaging living cells and tissues. Physiol Rev 90: 1103-1163.
    • (2010) Physiol Rev , vol.90 , pp. 1103-1163
    • Chudakov, D.M.1    Matz, M.V.2    Lukyanov, S.3    Lukyanov, K.A.4
  • 16
    • 33947632303 scopus 로고    scopus 로고
    • Use of bimolecular fluorescence complementation to study in vivo interactions between Cdc42p and Rdi1p of Saccharomyces cerevisiae
    • Cole, K.C., McLaughlin, H.W., and Johnson, D.I. (2007) Use of bimolecular fluorescence complementation to study in vivo interactions between Cdc42p and Rdi1p of Saccharomyces cerevisiae. Eukaryot Cell 6: 378-387.
    • (2007) Eukaryot Cell , vol.6 , pp. 378-387
    • Cole, K.C.1    McLaughlin, H.W.2    Johnson, D.I.3
  • 17
    • 34548524489 scopus 로고    scopus 로고
    • Spatial complexity and control of a bacterial cell cycle
    • Collier, J., and Shapiro, L. (2007) Spatial complexity and control of a bacterial cell cycle. Curr Opin Biotechnol 18: 333-340.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 333-340
    • Collier, J.1    Shapiro, L.2
  • 18
    • 34547637607 scopus 로고    scopus 로고
    • LambdaN-GFP: an RNA reporter system for live-cell imaging
    • Daigle, N., and Ellenberg, J. (2007) LambdaN-GFP: an RNA reporter system for live-cell imaging. Nat Methods 4: 633-636.
    • (2007) Nat Methods , vol.4 , pp. 633-636
    • Daigle, N.1    Ellenberg, J.2
  • 19
    • 78349254943 scopus 로고    scopus 로고
    • Subcellular communication through RNA transport and localized protein synthesis
    • Donnelly, C.J., Fainzilber, M., and Twiss, J.L. (2010) Subcellular communication through RNA transport and localized protein synthesis. Traffic 11: 1498-1505.
    • (2010) Traffic , vol.11 , pp. 1498-1505
    • Donnelly, C.J.1    Fainzilber, M.2    Twiss, J.L.3
  • 20
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz, M.B., Levine, A.J., Siggia, E.D., and Swain, P.S. (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186.
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 21
    • 77649190126 scopus 로고    scopus 로고
    • A binary Cy3 aptamer probe composed of folded modules
    • Endo, K., and Nakamura, Y. (2010) A binary Cy3 aptamer probe composed of folded modules. Anal Biochem 400: 103-109.
    • (2010) Anal Biochem , vol.400 , pp. 103-109
    • Endo, K.1    Nakamura, Y.2
  • 22
    • 78349284400 scopus 로고    scopus 로고
    • Automated quantitative live cell fluorescence microscopy
    • Fero, M., and Pogliano, K. (2010) Automated quantitative live cell fluorescence microscopy. Cold Spring Harb Perspect Biol 2: a000455.
    • (2010) Cold Spring Harb Perspect Biol , vol.2
    • Fero, M.1    Pogliano, K.2
  • 23
    • 0038376482 scopus 로고    scopus 로고
    • Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila
    • Forrest, K.M., and Gavis, E.R. (2003) Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila. Curr Biol 13: 1159-1168.
    • (2003) Curr Biol , vol.13 , pp. 1159-1168
    • Forrest, K.M.1    Gavis, E.R.2
  • 24
    • 62449123034 scopus 로고    scopus 로고
    • A chance at survival: gene expression noise and phenotypic diversification strategies
    • Fraser, D., and Kaern, M. (2009) A chance at survival: gene expression noise and phenotypic diversification strategies. Mol Microbiol 71: 1333-1340.
    • (2009) Mol Microbiol , vol.71 , pp. 1333-1340
    • Fraser, D.1    Kaern, M.2
  • 25
    • 33750247101 scopus 로고    scopus 로고
    • Linking stochastic dynamics to population distribution: an analytical framework of gene expression
    • Friedman, N., Cai, L., and Xie, X.S. (2006) Linking stochastic dynamics to population distribution: an analytical framework of gene expression. Phys Rev Lett 97: 168302.
    • (2006) Phys Rev Lett , vol.97 , pp. 168302
    • Friedman, N.1    Cai, L.2    Xie, X.S.3
  • 26
    • 66349113402 scopus 로고    scopus 로고
    • New fluorescence microscopy methods for microbiology: sharper, faster, and quantitative
    • Gitai, Z. (2009) New fluorescence microscopy methods for microbiology: sharper, faster, and quantitative. Curr Opin Microbiol 12: 341-346.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 341-346
    • Gitai, Z.1
  • 27
    • 3843126332 scopus 로고    scopus 로고
    • RNA dynamics in live Escherichia coli cells
    • Golding, I., and Cox, E.C. (2004) RNA dynamics in live Escherichia coli cells. Proc Natl Acad Sci USA 101: 11310-11315.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11310-11315
    • Golding, I.1    Cox, E.C.2
  • 28
    • 28944434119 scopus 로고    scopus 로고
    • Real-time kinetics of gene activity in individual bacteria
    • Golding, I., Paulsson, J., Zawilski, S.M., and Cox, E.C. (2005) Real-time kinetics of gene activity in individual bacteria. Cell 123: 1025-1036.
    • (2005) Cell , vol.123 , pp. 1025-1036
    • Golding, I.1    Paulsson, J.2    Zawilski, S.M.3    Cox, E.C.4
  • 29
    • 35848966372 scopus 로고    scopus 로고
    • Cytoskeletal elements in bacteria
    • Graumann, P.L. (2007) Cytoskeletal elements in bacteria. Annu Rev Microbiol 61: 589-618.
    • (2007) Annu Rev Microbiol , vol.61 , pp. 589-618
    • Graumann, P.L.1
  • 30
    • 67649922591 scopus 로고    scopus 로고
    • Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy
    • Greenfield, D., McEvoy, A.L., Shroff, H., Crooks, G.E., Wingreen, N.S., Betzig, E., and Liphardt, J. (2009) Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy. PLoS Biol 7: e1000137.
    • (2009) PLoS Biol , vol.7
    • Greenfield, D.1    McEvoy, A.L.2    Shroff, H.3    Crooks, G.E.4    Wingreen, N.S.5    Betzig, E.6    Liphardt, J.7
  • 32
    • 12544250874 scopus 로고    scopus 로고
    • Phospholipase Cb2 binds to and inhibits phospholipase Cd1
    • Guo, Y., Rebecchi, M., and Scarlata, S. (2005) Phospholipase Cb2 binds to and inhibits phospholipase Cd1. J Biol Chem 280: 1438-1447.
    • (2005) J Biol Chem , vol.280 , pp. 1438-1447
    • Guo, Y.1    Rebecchi, M.2    Scarlata, S.3
  • 33
    • 0028580734 scopus 로고
    • Wavelength mutations and posttranslational autoxidation of green fluorescent protein
    • Heim, R., Prasher, D.C., and Tsien, R.Y. (1994) Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc Natl Acad Sci USA 91: 12501-12504.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 12501-12504
    • Heim, R.1    Prasher, D.C.2    Tsien, R.Y.3
  • 34
    • 33845360042 scopus 로고    scopus 로고
    • Ultra-high resolution imaging by fluorescence photoactivation localization microscopy (FPALM)
    • Hess, S.T., Girirajan, T., and Mason, M.D. (2006) Ultra-high resolution imaging by fluorescence photoactivation localization microscopy (FPALM). Biophys J 91: 4258-4272.
    • (2006) Biophys J , vol.91 , pp. 4258-4272
    • Hess, S.T.1    Girirajan, T.2    Mason, M.D.3
  • 35
    • 36849053761 scopus 로고    scopus 로고
    • Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories
    • Hess, S.T., Gould, T.J., Gudheti, M.V., Maas, S.A., Mills, K.D., and Zimmerberg, J. (2007) Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories. Proc Natl Acad Sci USA 104: 17370-17375.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 17370-17375
    • Hess, S.T.1    Gould, T.J.2    Gudheti, M.V.3    Maas, S.A.4    Mills, K.D.5    Zimmerberg, J.6
  • 36
    • 0036241055 scopus 로고    scopus 로고
    • Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation
    • Hu, C.D., Chinenov, Y., and Kerppola, T.K. (2002) Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. Mol Cell 9: 789-798.
    • (2002) Mol Cell , vol.9 , pp. 789-798
    • Hu, C.D.1    Chinenov, Y.2    Kerppola, T.K.3
  • 37
    • 28544443162 scopus 로고    scopus 로고
    • Spatial regulation of beta-actin translation by Src-dependent phosphorylation of ZBP1
    • Hüttelmaier, S., Zenklusen, D., Lederer, M., Dictenberg, J., Lorenz, M., Meng, X., etal. (2005) Spatial regulation of beta-actin translation by Src-dependent phosphorylation of ZBP1. Nature 438: 512-515.
    • (2005) Nature , vol.438 , pp. 512-515
    • Hüttelmaier, S.1    Zenklusen, D.2    Lederer, M.3    Dictenberg, J.4    Lorenz, M.5    Meng, X.6
  • 38
    • 51349119090 scopus 로고    scopus 로고
    • Dark proteins: effect of inclusion body formation on quantification of protein expression
    • Iafolla, M.A., Mazumder, M., Sardana, V., Velauthapillai, T., Pannu, K., and McMillen, D.R. (2008) Dark proteins: effect of inclusion body formation on quantification of protein expression. Proteins 72: 1233-1242.
    • (2008) Proteins , vol.72 , pp. 1233-1242
    • Iafolla, M.A.1    Mazumder, M.2    Sardana, V.3    Velauthapillai, T.4    Pannu, K.5    McMillen, D.R.6
  • 40
    • 38549126635 scopus 로고    scopus 로고
    • Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter
    • Karpova, T.S., Kim, M.J., Spriet, C., Nalley, K., Stasevich, T.J., Kherrouche, Z., etal. (2008) Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter. Science 319: 466-469.
    • (2008) Science , vol.319 , pp. 466-469
    • Karpova, T.S.1    Kim, M.J.2    Spriet, C.3    Nalley, K.4    Stasevich, T.J.5    Kherrouche, Z.6
  • 41
    • 33745785300 scopus 로고    scopus 로고
    • Visualization of molecular interactions by fluorescence complementation
    • Kerppola, T.K. (2006) Visualization of molecular interactions by fluorescence complementation. Nat Rev Mol Cell Biol 7: 449-456.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 449-456
    • Kerppola, T.K.1
  • 42
    • 54249138245 scopus 로고    scopus 로고
    • The RNase E of Escherichia coli is a membrane-binding protein
    • Khemici, V., Poljak, L., Luisi, B.F., and Carpousis, A.J. (2008) The RNase E of Escherichia coli is a membrane-binding protein. Mol Microbiol 70: 799-813.
    • (2008) Mol Microbiol , vol.70 , pp. 799-813
    • Khemici, V.1    Poljak, L.2    Luisi, B.F.3    Carpousis, A.J.4
  • 43
    • 24744465188 scopus 로고    scopus 로고
    • Binary malachite green aptamer for fluorescent detection of nucleic acids
    • Kolpashchikov, D.M. (2005) Binary malachite green aptamer for fluorescent detection of nucleic acids. J Am Chem Soc 127: 12442-12443.
    • (2005) J Am Chem Soc , vol.127 , pp. 12442-12443
    • Kolpashchikov, D.M.1
  • 45
    • 47849121275 scopus 로고    scopus 로고
    • Simultaneous transport of different localized mRNA species revealed by live-cell imaging
    • Lange, S., Katayama, Y., Schmid, M., Burkacky, O., Bräuchle, C., Lamb, D.C., and Jansen, R.P. (2008) Simultaneous transport of different localized mRNA species revealed by live-cell imaging. Traffic 9: 1256-1267.
    • (2008) Traffic , vol.9 , pp. 1256-1267
    • Lange, S.1    Katayama, Y.2    Schmid, M.3    Burkacky, O.4    Bräuchle, C.5    Lamb, D.C.6    Jansen, R.P.7
  • 46
  • 48
    • 33646147144 scopus 로고    scopus 로고
    • Dynamical determinants of drug-inducible gene expression in a single bacterium
    • Le, T.T., Emonet, T., Harlepp, S., Guet, C.C., and Cluzel, P. (2006) Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophys J 90: 3315-3321.
    • (2006) Biophys J , vol.90 , pp. 3315-3321
    • Le, T.T.1    Emonet, T.2    Harlepp, S.3    Guet, C.C.4    Cluzel, P.5
  • 49
    • 0037213715 scopus 로고    scopus 로고
    • Gene expression and the myth of the average cell
    • Levsky, J.M., and Singer, R.H. (2003) Gene expression and the myth of the average cell. Trends Cell Biol 13: 4-6.
    • (2003) Trends Cell Biol , vol.13 , pp. 4-6
    • Levsky, J.M.1    Singer, R.H.2
  • 50
    • 0034651795 scopus 로고    scopus 로고
    • Compartmentalization of transcription and translation in Bacillus subtilis
    • Lewis, P.J., Thaker, S.D., and Errington, J. (2000) Compartmentalization of transcription and translation in Bacillus subtilis. EMBO J 19: 710-718.
    • (2000) EMBO J , vol.19 , pp. 710-718
    • Lewis, P.J.1    Thaker, S.D.2    Errington, J.3
  • 51
    • 11844252081 scopus 로고    scopus 로고
    • Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism
    • Magliery, T.J., Wilson, C.G., Pan, W., Mishler, D., Ghosh, I., Hamilton, A.D., and Regan, L. (2005) Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism. J Am Chem Soc 127: 146-157.
    • (2005) J Am Chem Soc , vol.127 , pp. 146-157
    • Magliery, T.J.1    Wilson, C.G.2    Pan, W.3    Mishler, D.4    Ghosh, I.5    Hamilton, A.D.6    Regan, L.7
  • 52
    • 0034859439 scopus 로고    scopus 로고
    • Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription
    • Mascarenhas, J., Weber, M.H., and Graumann, P.L. (2001) Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription. EMBO Rep 2: 685-689.
    • (2001) EMBO Rep , vol.2 , pp. 685-689
    • Mascarenhas, J.1    Weber, M.H.2    Graumann, P.L.3
  • 53
    • 0344687406 scopus 로고    scopus 로고
    • Protein fragment complementation strategies for biochemical network mapping
    • Michnick, S.W. (2003) Protein fragment complementation strategies for biochemical network mapping. Curr Opin Biotechnol 14: 610-617.
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 610-617
    • Michnick, S.W.1
  • 54
    • 34250870249 scopus 로고    scopus 로고
    • Single-cell analysis of gene expression by fluorescence microscopy
    • Miyashiro, T., and Goulian, M. (2007) Single-cell analysis of gene expression by fluorescence microscopy. Methods Enzymol 423: 458-475.
    • (2007) Methods Enzymol , vol.423 , pp. 458-475
    • Miyashiro, T.1    Goulian, M.2
  • 55
    • 12344260570 scopus 로고    scopus 로고
    • Increasing complexity of the bacterial cytoskeleton
    • Moller-Jensen, J., and Löwe, J. (2005) Increasing complexity of the bacterial cytoskeleton. Curr Opin Cell Biol 17: 75-81.
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 75-81
    • Moller-Jensen, J.1    Löwe, J.2
  • 57
    • 52649104026 scopus 로고    scopus 로고
    • Monitoring the interference of protein-protein interactions in vivo by bimolecular fluorescence complementation: the DnaK case
    • Morell, M., Czihal, P., Hoffmann, R., Otvos, L., Avilés, F.X., and Ventura, S. (2008) Monitoring the interference of protein-protein interactions in vivo by bimolecular fluorescence complementation: the DnaK case. Proteomics 8: 3433-3442.
    • (2008) Proteomics , vol.8 , pp. 3433-3442
    • Morell, M.1    Czihal, P.2    Hoffmann, R.3    Otvos, L.4    Avilés, F.X.5    Ventura, S.6
  • 59
    • 50349088658 scopus 로고    scopus 로고
    • Investigating intracellular dynamics of FtsZ cytoskeleton with photoactivation single-molecule tracking
    • Niu, L., and Yu, J. (2008) Investigating intracellular dynamics of FtsZ cytoskeleton with photoactivation single-molecule tracking. Biophys J 95: 2009-2016.
    • (2008) Biophys J , vol.95 , pp. 2009-2016
    • Niu, L.1    Yu, J.2
  • 60
    • 0037378193 scopus 로고    scopus 로고
    • RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis
    • Oguro, A., Ohtsu, T., Svitkin, Y.V., Sonenberg, N., and Nakamura, Y. (2003) RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis. RNA 9: 394-407.
    • (2003) RNA , vol.9 , pp. 394-407
    • Oguro, A.1    Ohtsu, T.2    Svitkin, Y.V.3    Sonenberg, N.4    Nakamura, Y.5
  • 61
    • 63049113238 scopus 로고    scopus 로고
    • Protein reconstitution methods for visualizing biomolecular function in living cells
    • Ozawa, T. (2009) Protein reconstitution methods for visualizing biomolecular function in living cells. Yakugaku Zasshi 129: 289-295.
    • (2009) Yakugaku Zasshi , vol.129 , pp. 289-295
    • Ozawa, T.1
  • 62
    • 34250210525 scopus 로고    scopus 로고
    • Imaging dynamics of endogenous mitochondrial RNA in single living cells
    • Ozawa, T., Natori, Y., Sato, M., and Umezawa, Y. (2007) Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat Methods 4: 413-419.
    • (2007) Nat Methods , vol.4 , pp. 413-419
    • Ozawa, T.1    Natori, Y.2    Sato, M.3    Umezawa, Y.4
  • 65
  • 66
    • 4444285375 scopus 로고    scopus 로고
    • Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs
    • Rackham, O., and Brown, C.M. (2004) Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs. EMBO J 23: 3346-3355.
    • (2004) EMBO J , vol.23 , pp. 3346-3355
    • Rackham, O.1    Brown, C.M.2
  • 67
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • Raser, J.M., and O'Shea, E.K. (2004) Control of stochasticity in eukaryotic gene expression. Science 304: 1811-1814.
    • (2004) Science , vol.304 , pp. 1811-1814
    • Raser, J.M.1    O'Shea, E.K.2
  • 68
    • 0034257926 scopus 로고    scopus 로고
    • CaMKIIalpha 3' untranslated region-directed mRNA translocation in living neurons: visualization by GFP linkage
    • Rook, M.S., Lu, M., and Kosik, K.S. (2000) CaMKIIalpha 3' untranslated region-directed mRNA translocation in living neurons: visualization by GFP linkage. J Neurosci 20: 6385-6393.
    • (2000) J Neurosci , vol.20 , pp. 6385-6393
    • Rook, M.S.1    Lu, M.2    Kosik, K.S.3
  • 70
    • 70349490822 scopus 로고    scopus 로고
    • Subcellular localization of a bacterial regulatory RNA
    • Russell, J.H., and Keiler, K.C. (2009) Subcellular localization of a bacterial regulatory RNA. Proc Natl Acad Sci USA 106: 16405-16409.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 16405-16409
    • Russell, J.H.1    Keiler, K.C.2
  • 71
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • Rust, M.J., Bates, M., and Zhuang, X. (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 3: 793-795.
    • (2006) Nat Methods , vol.3 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 73
    • 10744225575 scopus 로고    scopus 로고
    • Mechanisms of proinflammatory cytokine-induced biphasic NF-kappa B activation
    • Schmidt, C., Peng, B., Li, Z., Sclabas, G.M., Fujioka, S., Niu, J., etal. (2003) Mechanisms of proinflammatory cytokine-induced biphasic NF-kappa B activation. Mol Cell 12: 1287-1300.
    • (2003) Mol Cell , vol.12 , pp. 1287-1300
    • Schmidt, C.1    Peng, B.2    Li, Z.3    Sclabas, G.M.4    Fujioka, S.5    Niu, J.6
  • 74
    • 0037315564 scopus 로고    scopus 로고
    • Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
    • Selinger, D.W., Saxena, R.M., Cheung, K.J., Church, G.M., and Rosenow, C. (2003) Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. Genome Res 13: 216-223.
    • (2003) Genome Res , vol.13 , pp. 216-223
    • Selinger, D.W.1    Saxena, R.M.2    Cheung, K.J.3    Church, G.M.4    Rosenow, C.5
  • 75
    • 30944467113 scopus 로고    scopus 로고
    • A guide to choosing fluorescent proteins
    • Shaner, N.C., Steinbach, P.A., and Tsien, R.Y. (2005) A guide to choosing fluorescent proteins. Nat Methods 2: 905-909.
    • (2005) Nat Methods , vol.2 , pp. 905-909
    • Shaner, N.C.1    Steinbach, P.A.2    Tsien, R.Y.3
  • 77
    • 0035912805 scopus 로고    scopus 로고
    • The physiological significance of beta-actin mRNA localization in determining cell polarity and directional motility
    • Shestakova, E.A., Singer, R.H., and Condeelis, J. (2001) The physiological significance of beta-actin mRNA localization in determining cell polarity and directional motility. Proc Natl Acad Sci USA 98: 7045-7050.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 7045-7050
    • Shestakova, E.A.1    Singer, R.H.2    Condeelis, J.3
  • 78
    • 53949107378 scopus 로고    scopus 로고
    • Fluorescence complementation: an emerging tool for biological research
    • Shyu, Y.J., and Hu, C.D. (2008) Fluorescence complementation: an emerging tool for biological research. Trends Biotechnol 26: 622-630.
    • (2008) Trends Biotechnol , vol.26 , pp. 622-630
    • Shyu, Y.J.1    Hu, C.D.2
  • 79
    • 0041919397 scopus 로고    scopus 로고
    • RNA localization: visualization in real-time
    • Singer, R.H. (2003) RNA localization: visualization in real-time. Curr Biol 13: R673-R675.
    • (2003) Curr Biol , vol.13
    • Singer, R.H.1
  • 80
    • 33645293152 scopus 로고    scopus 로고
    • An excitable gene regulatory circuit induces transient cellular differentiation
    • Suel, G.M., Garcia-Ojalvo, J., Liberman, L.M., and Elowitz, M.B. (2006) An excitable gene regulatory circuit induces transient cellular differentiation. Nature 440: 545-550.
    • (2006) Nature , vol.440 , pp. 545-550
    • Suel, G.M.1    Garcia-Ojalvo, J.2    Liberman, L.M.3    Elowitz, M.B.4
  • 81
    • 0036790975 scopus 로고    scopus 로고
    • Intrinsic and extrinsic contributions to stochasticity in gene expression
    • Swain, P.S., Elowitz, M.B., and Siggia, E.D. (2002) Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc Natl Acad Sci USA 99: 12795-12800.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12795-12800
    • Swain, P.S.1    Elowitz, M.B.2    Siggia, E.D.3
  • 82
    • 33846818898 scopus 로고    scopus 로고
    • RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton
    • Taghbalout, A., and Rothfield, L. (2007) RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton. Proc Natl Acad Sci USA 104: 1667-1672.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 1667-1672
    • Taghbalout, A.1    Rothfield, L.2
  • 83
    • 46649086171 scopus 로고    scopus 로고
    • RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome
    • Taghbalout, A., and Rothfield, L. (2008) RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome. J Biol Chem 283: 13850-13855.
    • (2008) J Biol Chem , vol.283 , pp. 13850-13855
    • Taghbalout, A.1    Rothfield, L.2
  • 84
    • 0034625003 scopus 로고    scopus 로고
    • The myosin motor, Myo4p, binds Ash1 mRNA via the adapter protein, She3p
    • Takizawa, P.A., and Vale, R.D. (2000) The myosin motor, Myo4p, binds Ash1 mRNA via the adapter protein, She3p. Proc Natl Acad Sci USA 97: 5273-5278.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 5273-5278
    • Takizawa, P.A.1    Vale, R.D.2
  • 85
    • 77955102352 scopus 로고    scopus 로고
    • Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
    • Taniguchi, Y., Choi, P.J., Li, G.W., Chen, H., Babu, M., Hearn, J., etal. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
    • (2010) Science , vol.329 , pp. 533-538
    • Taniguchi, Y.1    Choi, P.J.2    Li, G.W.3    Chen, H.4    Babu, M.5    Hearn, J.6
  • 86
    • 34250191761 scopus 로고    scopus 로고
    • RNA visualization in live bacterial cell using split fluorescent protein approach
    • Valencia-Burton, M.A., McCullough, R.M., Cantor, C.R., and Broude, N.E. (2007) RNA visualization in live bacterial cell using split fluorescent protein approach. Nat Methods 4: 421-427.
    • (2007) Nat Methods , vol.4 , pp. 421-427
    • Valencia-Burton, M.A.1    McCullough, R.M.2    Cantor, C.R.3    Broude, N.E.4
  • 88
    • 70350493966 scopus 로고    scopus 로고
    • The dynamic nature of the bacterial cytoskeleton
    • Vats, P., Yu, J., and Rothfield, L. (2009) The dynamic nature of the bacterial cytoskeleton. Cell Mol Life Sci 66: 3353-3362.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 3353-3362
    • Vats, P.1    Yu, J.2    Rothfield, L.3
  • 91
    • 79955577661 scopus 로고    scopus 로고
    • RNA detection in live bacterial cells using fluorescent protein complementation triggered by interaction of two RNA aptamers with two RNA-binding peptides
    • doi:10.3390/ph4030494
    • Yiu, H.W., Demidov, V.V., Toran, P., Cantor, C.R., and Broude, N.E. (2011) RNA detection in live bacterial cells using fluorescent protein complementation triggered by interaction of two RNA aptamers with two RNA-binding peptides. Pharmaceuticals 4: 494-508. doi:10.3390/ph4030494
    • (2011) Pharmaceuticals , vol.4 , pp. 494-508
    • Yiu, H.W.1    Demidov, V.V.2    Toran, P.3    Cantor, C.R.4    Broude, N.E.5
  • 92
    • 33645033645 scopus 로고    scopus 로고
    • Probing gene expression in live cells, one protein molecule at a time
    • Yu, J., Xiao, J., Ren, X., Lao, K., and Xie, X.S. (2006) Probing gene expression in live cells, one protein molecule at a time. Science 311: 1600-1603.
    • (2006) Science , vol.311 , pp. 1600-1603
    • Yu, J.1    Xiao, J.2    Ren, X.3    Lao, K.4    Xie, X.S.5
  • 93
    • 50249124582 scopus 로고    scopus 로고
    • In vivo imaging of oskar mRNA transport reveals the mechanism of posterior localization
    • Zimyanin, V.L., Belaya, K., Pecreaux, J., Gilchrist, M.J., Clark, A., Davis, I., and St Johnston, D. (2008) In vivo imaging of oskar mRNA transport reveals the mechanism of posterior localization. Cell 134: 843-853.
    • (2008) Cell , vol.134 , pp. 843-853
    • Zimyanin, V.L.1    Belaya, K.2    Pecreaux, J.3    Gilchrist, M.J.4    Clark, A.5    Davis, I.6    St Johnston, D.7


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