Quantitative genome-scale analysis of protein localization in an asymmetric bacterium

Proceedings of the National Academy of Sciences of the United States of America

Volumn 106, Issue 19, 2009, Pages 7858-7863

  Werner, John N ^a   Chen, Eric Y ^a   Guberman, Jonathan M ^a   Zippilli, Angela R ^a   Irgon, Joseph J ^a   Gitai, Zemer ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

Bacteria; Caulobacter; Genomics; High throughput imaging; Quantitative image analysis

Indexed keywords

BACTERIAL PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CAULOBACTER CRESCENTUS; CELLULAR DISTRIBUTION; FLUORESCENCE; GENOME ANALYSIS; HIGH THROUGHPUT SCREENING; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN LOCALIZATION; QUANTITATIVE ANALYSIS;

BACTERIAL PROTEINS; CAULOBACTER CRESCENTUS; COMPUTATIONAL BIOLOGY; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; GENOME, BACTERIAL; GENOMICS; IMAGE PROCESSING, COMPUTER-ASSISTED; LUMINESCENT PROTEINS; OPEN READING FRAMES; PROTEIN STRUCTURE, TERTIARY;

BACTERIA (MICROORGANISMS); CAULOBACTER; CAULOBACTER VIBRIOIDES;

EID: 66049157868     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0901781106     Document Type: Article

References (23)

1. Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425:686-691. (Pubitemid 37314307)
2. Kitagawa M, et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research. DNA Res 12:291-299.
3. Matsuyama A, et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 24:841-847. (Pubitemid 44086626)
4. Gitai Z (2005) The new bacterial cell biology: Moving parts and subcellular architecture. Cell 120:577-586. (Pubitemid 40343071)
5. Collier J, Shapiro L (2007) Spatial complexity and control of a bacterial cell cycle. Curr Opin Biotechnol 18:333-340. (Pubitemid 47385187)
6. Russell JH, Keiler KC (2008) Screen for localized proteins in Caulobacter crescentus. PLoS ONE 3:e1756.
7. Guberman JM, Fay A, Dworkin J, Wingreen NS, Gitai Z (2008) PSICIC: Noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution. PLoS Comput Biol 4:e1000233.
8. Walhout AJ, et al. (2000) GATEWAY recombinational cloning: Application to the cloning of large numbers of open reading frames or ORFeomes. Methods Enzymol 328:575-592.
9. Brasch MA, Hartley JL, Vidal M (2004) ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list. Genome Res 14:2001-2009. (Pubitemid 39440178)
10. Shaner NC, et al. (2004) Improved monomeric red, orange, and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat Biotechnol 22:1567-1572. (Pubitemid 40039460)
11. Chen JC, Viollier PH, Shapiro L (2005) Amembrane metalloprotease participates in the sequential degradation of a Caulobacter polarity determinant. Mol Microbiol 55:1085-1103. (Pubitemid 40299179)
12. Meisenzahl AC, Shapiro L, Jenal U (1997) Isolation and characterization of a xylose-dependent promoter from Caulobacter crescentus. J Bacteriol 179:592-600. (Pubitemid 27051809)
13. Rey S, et al. (2005) PSORTdb: A protein subcellular localization database for bacteria. Nucleic Acids Res 33:D164-D168. (Pubitemid 40207852)
14. Jensen RB, Wang SC, Shapiro L (2001) Amoving DNA replication factory in Caulobacter crescentus. EMBO J 20:4952-4963. (Pubitemid 32848647)
15. Figge RM, Divakaruni AV, Gober JW (2004) MreB, the cell shape-determining bacterial actin homologue, co-ordinates cell wall morphogenesis in Caulobacter crescentus. Mol Microbiol 51:1321-1332. (Pubitemid 38338895)
16. Gitai Z, Dye N, Shapiro L (2004) An actin-like gene can determine cell polarity in bacteria. Proc Natl Acad Sci USA 101:8643-8648. (Pubitemid 38745824)
17. Briegel A, et al. (2006) Multiple large filament bundles observed in Caulobacter crescentus by electron cryotomography. Mol Microbiol 62:5-14. (Pubitemid 44386546)
18. Lindner AB, Madden R, Demarez A, Stewart EJ, Taddei F (2008) Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation. Proc Natl Acad Sci USA 105:3076-3081.
19. Harris MA, et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 32:D258-D261. (Pubitemid 38081651)
20. Laub MT, McAdams HH, Feldblyum T, Fraser CM, Shapiro L (2000) Global analysis of the genetic network controlling a bacterial cell cycle. Science 290:2144-2148. (Pubitemid 32001594)
21. Biondi EG, et al. (2006) Regulation of the bacterial cell cycle by an integrated genetic circuit. Nature 444:899-904. (Pubitemid 46024998)
22. Ryan KR, Huntwork S, Shapiro L (2004) Recruitment of a cytoplasmic response regulator to the cell pole is linked to its cell cycle-regulated proteolysis. Proc Natl Acad Sci USA 101:7415-7420. (Pubitemid 38638047)
23. Jacobs C, Domian IJ, Maddock JR, Shapiro L (1999) Cell cycle-dependent polar localization of an essential bacterial histidine kinase that controls DNA replication and cell division. Cell 97:111-120. (Pubitemid 29165894)