메뉴 건너뛰기




Volumn 90, Issue 6-7, 2011, Pages 603-611

Alterations of pre-mRNA splicing in human inflammatory bowel disease

Author keywords

Crohn's disease; Inflammatory bowel disease; Intron retention; Splicing; Ulcerative colitis

Indexed keywords

MESSENGER RNA; PROTEIN PARC;

EID: 79955478205     PISSN: 01719335     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejcb.2010.11.010     Document Type: Article
Times cited : (38)

References (63)
  • 2
    • 0034882240 scopus 로고    scopus 로고
    • Epithelial expression of caveolin-2, but not caveolin-1, is enhanced in the inflamed mucosa of patients with ulcerative colitis
    • Andoh A., Saotome T., Sato H., Tsujikawa T., Araki Y., Fujiyama Y., Bamba T. Epithelial expression of caveolin-2, but not caveolin-1, is enhanced in the inflamed mucosa of patients with ulcerative colitis. Inflamm. Bowel Dis. 2001, 7:210-214.
    • (2001) Inflamm. Bowel Dis. , vol.7 , pp. 210-214
    • Andoh, A.1    Saotome, T.2    Sato, H.3    Tsujikawa, T.4    Araki, Y.5    Fujiyama, Y.6    Bamba, T.7
  • 3
    • 26944453614 scopus 로고    scopus 로고
    • Splicing in action: assessing disease causing sequence changes
    • Baralle D., Baralle M. Splicing in action: assessing disease causing sequence changes. J. Med. Genet. 2005, 42:737-748.
    • (2005) J. Med. Genet. , vol.42 , pp. 737-748
    • Baralle, D.1    Baralle, M.2
  • 4
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black D.L. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 2003, 72:291-336.
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 291-336
    • Black, D.L.1
  • 5
    • 0037155183 scopus 로고    scopus 로고
    • Cytokine-induced down-regulation of zfm1/splicing factor-1 promotes smooth muscle cell proliferation
    • Cattaruzza M., Schäfer K., Hecker M. Cytokine-induced down-regulation of zfm1/splicing factor-1 promotes smooth muscle cell proliferation. J. Biol. Chem. 2002, 277:6582-6589.
    • (2002) J. Biol. Chem. , vol.277 , pp. 6582-6589
    • Cattaruzza, M.1    Schäfer, K.2    Hecker, M.3
  • 6
    • 19344374029 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species
    • Conti E., Izaurralde E. Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species. Curr. Opin. Cell Biol. 2005, 17:316-325.
    • (2005) Curr. Opin. Cell Biol. , vol.17 , pp. 316-325
    • Conti, E.1    Izaurralde, E.2
  • 8
    • 0036840337 scopus 로고    scopus 로고
    • Expression of the regenerating gene family in inflammatory bowel disease mucosa: Reg Ialpha upregulation, processing, and antiapoptotic activity
    • Dieckgraefe B.K., Crimmins D.L., Landt V., Houchen C., Anant S., Porche-Sorbet R., Ladenson J.H. Expression of the regenerating gene family in inflammatory bowel disease mucosa: Reg Ialpha upregulation, processing, and antiapoptotic activity. J. Investig. Med. 2002, 50:421-434.
    • (2002) J. Investig. Med. , vol.50 , pp. 421-434
    • Dieckgraefe, B.K.1    Crimmins, D.L.2    Landt, V.3    Houchen, C.4    Anant, S.5    Porche-Sorbet, R.6    Ladenson, J.H.7
  • 9
    • 0035315846 scopus 로고    scopus 로고
    • Manufacturing DNA microarrays of high spot homogeneity and reduced background signal
    • Diehl F., Grahlmann S., Beier M., Hoheisel J.D. Manufacturing DNA microarrays of high spot homogeneity and reduced background signal. Nucleic Acids Res. 2001, 29:E38.
    • (2001) Nucleic Acids Res. , vol.29
    • Diehl, F.1    Grahlmann, S.2    Beier, M.3    Hoheisel, J.D.4
  • 10
    • 0037443035 scopus 로고    scopus 로고
    • Pre-mRNA splicing and human disease
    • Faustino N.A., Cooper T.A. Pre-mRNA splicing and human disease. Genes Dev. 2003, 17:419-437.
    • (2003) Genes Dev. , vol.17 , pp. 419-437
    • Faustino, N.A.1    Cooper, T.A.2
  • 12
    • 4844228002 scopus 로고    scopus 로고
    • Recent advances in the regulation of CD44 expression and its role in inflammation and autoimmune diseases
    • Gee K., Kryworuchko M., Kumar A. Recent advances in the regulation of CD44 expression and its role in inflammation and autoimmune diseases. Arch. Immunol. Ther. Exp. (Warsz.) 2004, 52:13-26.
    • (2004) Arch. Immunol. Ther. Exp. (Warsz.) , vol.52 , pp. 13-26
    • Gee, K.1    Kryworuchko, M.2    Kumar, A.3
  • 19
    • 57749116036 scopus 로고    scopus 로고
    • FGD2, a CDC42-specific exchange factor expressed by antigen-presenting cells, localizes to early endosomes and active membrane ruffles
    • Huber C., Mårtensson A., Bokoch G.M., Nemazee D., Gavin A.L. FGD2, a CDC42-specific exchange factor expressed by antigen-presenting cells, localizes to early endosomes and active membrane ruffles. J. Biol. Chem. 2008, 283:34002-34012.
    • (2008) J. Biol. Chem. , vol.283 , pp. 34002-34012
    • Huber, C.1    Mårtensson, A.2    Bokoch, G.M.3    Nemazee, D.4    Gavin, A.L.5
  • 24
    • 4644278821 scopus 로고    scopus 로고
    • Immediate early gene X-1 interacts with proteins that modulate apoptosis
    • Kumar R., Lutz W., Frank E., Im H. Immediate early gene X-1 interacts with proteins that modulate apoptosis. Biochem. Biophys. Res. Commun. 2004, 323:1293-1298.
    • (2004) Biochem. Biophys. Res. Commun. , vol.323 , pp. 1293-1298
    • Kumar, R.1    Lutz, W.2    Frank, E.3    Im, H.4
  • 25
    • 0035801373 scopus 로고    scopus 로고
    • The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
    • Le Hir H., Gatfield D., Izaurralde E., Moore M.J. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J. 2001, 20:4987-4997.
    • (2001) EMBO J. , vol.20 , pp. 4987-4997
    • Le Hir, H.1    Gatfield, D.2    Izaurralde, E.3    Moore, M.J.4
  • 26
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis B.P., Green R.E., Brenner S.E. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:189-192.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 27
    • 0035028094 scopus 로고    scopus 로고
    • Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay
    • Maquat L.E., Li X. Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay. RNA 2001, 7:445-456.
    • (2001) RNA , vol.7 , pp. 445-456
    • Maquat, L.E.1    Li, X.2
  • 28
    • 0026543785 scopus 로고
    • Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2
    • Mayeda A., Krainer A.R. Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2. Cell 1992, 68:365-375.
    • (1992) Cell , vol.68 , pp. 365-375
    • Mayeda, A.1    Krainer, A.R.2
  • 29
    • 0142121296 scopus 로고    scopus 로고
    • Immune networks in animal models of inflammatory bowel disease
    • Mizoguchi A., Mizoguchi E., Bhan A.K. Immune networks in animal models of inflammatory bowel disease. Inflamm. Bowel Dis. 2003, 9:246-259.
    • (2003) Inflamm. Bowel Dis. , vol.9 , pp. 246-259
    • Mizoguchi, A.1    Mizoguchi, E.2    Bhan, A.K.3
  • 33
    • 27844524061 scopus 로고    scopus 로고
    • A novel 5' ATRX mutation with splicing consequences in acquired alpha thalassemia-myelodysplastic syndrome
    • Nelson M.E., Thurmes P.J., Hoyer J.D., Steensma D.P. A novel 5' ATRX mutation with splicing consequences in acquired alpha thalassemia-myelodysplastic syndrome. Haematologica 2005, 90:1463-1470.
    • (2005) Haematologica , vol.90 , pp. 1463-1470
    • Nelson, M.E.1    Thurmes, P.J.2    Hoyer, J.D.3    Steensma, D.P.4
  • 35
    • 23644432376 scopus 로고    scopus 로고
    • The splicing machinery is a genetic modifier of disease severity
    • Nissim-Rafinia M., Kerem B. The splicing machinery is a genetic modifier of disease severity. Trends Genet. 2005, 21:480-483.
    • (2005) Trends Genet. , vol.21 , pp. 480-483
    • Nissim-Rafinia, M.1    Kerem, B.2
  • 36
    • 77950524790 scopus 로고    scopus 로고
    • The splicing regulator Sam68 binds to a novel exonic splicing silencer and functions in SMN2 alternative splicing in spinal muscular atrophy
    • Pedrotti S., Bielli P., Paronetto M.P., Ciccosanti F., Fimia G.M., Stamm S., Manley J.L., Sette C. The splicing regulator Sam68 binds to a novel exonic splicing silencer and functions in SMN2 alternative splicing in spinal muscular atrophy. EMBO J. 2010, 29:1235-1247.
    • (2010) EMBO J. , vol.29 , pp. 1235-1247
    • Pedrotti, S.1    Bielli, P.2    Paronetto, M.P.3    Ciccosanti, F.4    Fimia, G.M.5    Stamm, S.6    Manley, J.L.7    Sette, C.8
  • 37
    • 0026583866 scopus 로고
    • Diet and inflammatory bowel disease: a case-control study
    • Persson P.G., Ahlbom A., Hellers G. Diet and inflammatory bowel disease: a case-control study. Epidemiology 1992, 3:47-52.
    • (1992) Epidemiology , vol.3 , pp. 47-52
    • Persson, P.G.1    Ahlbom, A.2    Hellers, G.3
  • 38
    • 0037043658 scopus 로고    scopus 로고
    • Inflammatory bowel disease
    • Podolsky D.K. Inflammatory bowel disease. N. Engl. J. Med. 2002, 347:417-429.
    • (2002) N. Engl. J. Med. , vol.347 , pp. 417-429
    • Podolsky, D.K.1
  • 39
    • 33845610174 scopus 로고    scopus 로고
    • Concentration dependent selection of targets by an SR splicing regulator results in tissue-specific RNA processing
    • Qi J., Su S., McGuffin M.E., Mattox W. Concentration dependent selection of targets by an SR splicing regulator results in tissue-specific RNA processing. Nucleic Acids Res. 2006, 34:6256-6263.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 6256-6263
    • Qi, J.1    Su, S.2    McGuffin, M.E.3    Mattox, W.4
  • 40
    • 5344244656 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, R Development Core Team
    • R Development Core Team R: A Language and Environment for Statistical Computing 2006, R Foundation for Statistical Computing, Vienna, Austria.
    • (2006) R: A Language and Environment for Statistical Computing
  • 42
    • 33748848714 scopus 로고    scopus 로고
    • Interleukin-6 biology is coordinated by membrane-bound and soluble receptors: role in inflammation and cancer
    • Rose-John S., Scheller J., Elson G., Jones S.A. Interleukin-6 biology is coordinated by membrane-bound and soluble receptors: role in inflammation and cancer. J. Leukoc. Biol. 2006, 80:227-236.
    • (2006) J. Leukoc. Biol. , vol.80 , pp. 227-236
    • Rose-John, S.1    Scheller, J.2    Elson, G.3    Jones, S.A.4
  • 45
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 47
    • 21244439380 scopus 로고    scopus 로고
    • Regulation of apoptosis by alternative pre-mRNA splicing
    • Schwerk C., Schulze-Osthoff K. Regulation of apoptosis by alternative pre-mRNA splicing. Mol. Cell 2005, 19:1-13.
    • (2005) Mol. Cell , vol.19 , pp. 1-13
    • Schwerk, C.1    Schulze-Osthoff, K.2
  • 49
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • (Article 3)
    • Smyth G.K. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 2004, 3. (Article 3).
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Smyth, G.K.1
  • 50
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth G.K., Speed T. Normalization of cDNA microarray data. Methods 2003, 31:265-273.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 58
    • 0037246194 scopus 로고    scopus 로고
    • Roles of the stress-induced gene IEX-1 in regulation of cell death and oncogenesis
    • Wu M.X. Roles of the stress-induced gene IEX-1 in regulation of cell death and oncogenesis. Apoptosis 2003, 8:11-18.
    • (2003) Apoptosis , vol.8 , pp. 11-18
    • Wu, M.X.1
  • 59
    • 27144543208 scopus 로고    scopus 로고
    • N-terminally truncated variant of the mouse GAIP/RGS19 lacks selectivity of full-length GAIP/RGS19 protein in regulating ORL1 receptor signaling
    • Xie G., Yanagisawa Y., Ito E., Maruyama K., Han X., Kim K.J., Han K.R., Moriyama K., Palmer P.P. N-terminally truncated variant of the mouse GAIP/RGS19 lacks selectivity of full-length GAIP/RGS19 protein in regulating ORL1 receptor signaling. J. Mol. Biol. 2005, 353:1081-1092.
    • (2005) J. Mol. Biol. , vol.353 , pp. 1081-1092
    • Xie, G.1    Yanagisawa, Y.2    Ito, E.3    Maruyama, K.4    Han, X.5    Kim, K.J.6    Han, K.R.7    Moriyama, K.8    Palmer, P.P.9
  • 60
    • 77953312484 scopus 로고    scopus 로고
    • Aberrant splicing of the milk fat globule-EGF factor 8 (MFG-E8) gene in human systemic lupus erythematosus
    • Yamaguchi H., Fujimoto T., Nakamura S., Ohmura K., Mimori T., Matsuda F., Nagata S. Aberrant splicing of the milk fat globule-EGF factor 8 (MFG-E8) gene in human systemic lupus erythematosus. Eur. J. Immunol. 2010, 40:1778-1785.
    • (2010) Eur. J. Immunol. , vol.40 , pp. 1778-1785
    • Yamaguchi, H.1    Fujimoto, T.2    Nakamura, S.3    Ohmura, K.4    Mimori, T.5    Matsuda, F.6    Nagata, S.7
  • 61
    • 0033508882 scopus 로고    scopus 로고
    • The interaction of intestinal epithelial cells and intraepithelial lymphocytes in host defense
    • Yoshikai Y. The interaction of intestinal epithelial cells and intraepithelial lymphocytes in host defense. Immunol. Res. 1999, 20:219-235.
    • (1999) Immunol. Res. , vol.20 , pp. 219-235
    • Yoshikai, Y.1
  • 62
    • 0031840487 scopus 로고    scopus 로고
    • At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation
    • Zhang J., Sun X., Qian Y., LaDuca J.P., Maquat L.E. At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation. Mol. Cell. Biol. 1998, 18:5272-5283.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 5272-5283
    • Zhang, J.1    Sun, X.2    Qian, Y.3    LaDuca, J.P.4    Maquat, L.E.5
  • 63
    • 0037068447 scopus 로고    scopus 로고
    • Comprehensive proteomic analysis of the human spliceosome
    • Zhou Z., Licklider L.J., Gygi S.P., Reed R. Comprehensive proteomic analysis of the human spliceosome. Nature 2002, 419:182-185.
    • (2002) Nature , vol.419 , pp. 182-185
    • Zhou, Z.1    Licklider, L.J.2    Gygi, S.P.3    Reed, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.