-
1
-
-
78049414227
-
Epigenetic reprogramming in plant and animal development
-
Feng S., Jacobsen S.E., Reik W. Epigenetic reprogramming in plant and animal development. Science 2010, 330:622-627.
-
(2010)
Science
, vol.330
, pp. 622-627
-
-
Feng, S.1
Jacobsen, S.E.2
Reik, W.3
-
2
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010, 11:204-220.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
3
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng S., Cokus S.J., Zhang X., Chen P.Y., Bostick M., Goll M.G., Hetzel J., Jain J., Strauss S.H., Halpern M.E., et al. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA 2010, 107:8689-8694.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
Chen, P.Y.4
Bostick, M.5
Goll, M.G.6
Hetzel, J.7
Jain, J.8
Strauss, S.H.9
Halpern, M.E.10
-
4
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A., McDaniel I.E., Silva P., Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010, 328:916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
5
-
-
13544271154
-
Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications
-
Johnson L., Mollah S., Garcia B.A., Muratore T.L., Shabanowitz J., Hunt D.F., Jacobsen S.E. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res 2004, 32:6511-6518.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6511-6518
-
-
Johnson, L.1
Mollah, S.2
Garcia, B.A.3
Muratore, T.L.4
Shabanowitz, J.5
Hunt, D.F.6
Jacobsen, S.E.7
-
6
-
-
43249091345
-
Distinctive core histone post-translational modification patterns in Arabidopsis thaliana
-
Zhang K., Sridhar V.V., Zhu J., Kapoor A., Zhu J.K. Distinctive core histone post-translational modification patterns in Arabidopsis thaliana. PLoS ONE 2007, 2:e1210.
-
(2007)
PLoS ONE
, vol.2
-
-
Zhang, K.1
Sridhar, V.V.2
Zhu, J.3
Kapoor, A.4
Zhu, J.K.5
-
7
-
-
67650091251
-
Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
-
Zhang X., Bernatavichute Y.V., Cokus S., Pellegrini M., Jacobsen S.E. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol 2009, 10:R62.
-
(2009)
Genome Biol
, vol.10
-
-
Zhang, X.1
Bernatavichute, Y.V.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
8
-
-
26444508841
-
Single-nucleosome mapping of histone modifications in S. cerevisiae
-
Liu C.L., Kaplan T., Kim M., Buratowski S., Schreiber S.L., Friedman N., Rando O.J. Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol 2005, 3:e328.
-
(2005)
PLoS Biol
, vol.3
-
-
Liu, C.L.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Schreiber, S.L.5
Friedman, N.6
Rando, O.J.7
-
9
-
-
42549090878
-
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression
-
Li X., Wang X., He K., Ma Y., Su N., He H., Stolc V., Tongprasit W., Jin W., Jiang J., et al. High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant Cell 2008, 20:259-276.
-
(2008)
Plant Cell
, vol.20
, pp. 259-276
-
-
Li, X.1
Wang, X.2
He, K.3
Ma, Y.4
Su, N.5
He, H.6
Stolc, V.7
Tongprasit, W.8
Jin, W.9
Jiang, J.10
-
10
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen T.S., Ku M., Jaffe D.B., Issac B., Lieberman E., Giannoukos G., Alvarez P., Brockman W., Kim T.K., Koche R.P., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448:553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
-
11
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A., Cuddapah S., Cui K., Roh T.Y., Schones D.E., Wang Z., Wei G., Chepelev I., Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
12
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok D.K., Harbison C.T., Levine S., Cole M., Hannett N.M., Lee T.I., Bell G.W., Walker K., Rolfe P.A., Herbolsheimer E., et al. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 2005, 122:517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Lee, T.I.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
-
13
-
-
76949107741
-
Histone H3 lysine 4 (H3K4) methylation in development and differentiation
-
Eissenberg J.C., Shilatifard A. Histone H3 lysine 4 (H3K4) methylation in development and differentiation. Dev Biol 2010, 339:240-249.
-
(2010)
Dev Biol
, vol.339
, pp. 240-249
-
-
Eissenberg, J.C.1
Shilatifard, A.2
-
14
-
-
33846394799
-
Gene regulation by chromatin structure: paradigms established in Drosophila melanogaster
-
Schulze S.R., Wallrath L.L. Gene regulation by chromatin structure: paradigms established in Drosophila melanogaster. Annu Rev Entomol 2007, 52:171-192.
-
(2007)
Annu Rev Entomol
, vol.52
, pp. 171-192
-
-
Schulze, S.R.1
Wallrath, L.L.2
-
15
-
-
0141816768
-
ASH1, a Drosophila trithorax group protein, is required for methylation of lysine 4 residues on histone H3
-
Byrd K.N., Shearn A. ASH1, a Drosophila trithorax group protein, is required for methylation of lysine 4 residues on histone H3. Proc Natl Acad Sci USA 2003, 100:11535-11540.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11535-11540
-
-
Byrd, K.N.1
Shearn, A.2
-
16
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard A. Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Curr Opin Cell Biol 2008, 20:341-348.
-
(2008)
Curr Opin Cell Biol
, vol.20
, pp. 341-348
-
-
Shilatifard, A.1
-
17
-
-
36549086300
-
Mammalian ASH1L is a histone methyltransferase that occupies the transcribed region of active genes
-
Gregory G.D., Vakoc C.R., Rozovskaia T., Zheng X., Patel S., Nakamura T., Canaani E., Blobel G.A. Mammalian ASH1L is a histone methyltransferase that occupies the transcribed region of active genes. Mol Cell Biol 2007, 27:8466-8479.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 8466-8479
-
-
Gregory, G.D.1
Vakoc, C.R.2
Rozovskaia, T.3
Zheng, X.4
Patel, S.5
Nakamura, T.6
Canaani, E.7
Blobel, G.A.8
-
18
-
-
0035503921
-
The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
-
Baumbusch L.O., Thorstensen T., Krauss V., Fischer A., Naumann K., Assalkhou R., Schulz I., Reuter G., Aalen R.B. The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucleic Acids Res 2001, 29:4319-4333.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4319-4333
-
-
Baumbusch, L.O.1
Thorstensen, T.2
Krauss, V.3
Fischer, A.4
Naumann, K.5
Assalkhou, R.6
Schulz, I.7
Reuter, G.8
Aalen, R.B.9
-
19
-
-
33645820226
-
The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes
-
Alvarez-Venegas R., Sadder M., Hlavacka A., Baluska F., Xia Y., Lu G., Firsov A., Sarath G., Moriyama H., Dubrovsky J.G., et al. The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes. Proc Natl Acad Sci USA 2006, 103:6049-6054.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6049-6054
-
-
Alvarez-Venegas, R.1
Sadder, M.2
Hlavacka, A.3
Baluska, F.4
Xia, Y.5
Lu, G.6
Firsov, A.7
Sarath, G.8
Moriyama, H.9
Dubrovsky, J.G.10
-
20
-
-
48249155078
-
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions
-
Saleh A., Alvarez-Venegas R., Yilmaz M., Le O., Hou G., Sadder M., Al-Abdallat A., Xia Y., Lu G., Ladunga I., et al. The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions. Plant Cell 2008, 20:568-579.
-
(2008)
Plant Cell
, vol.20
, pp. 568-579
-
-
Saleh, A.1
Alvarez-Venegas, R.2
Yilmaz, M.3
Le, O.4
Hou, G.5
Sadder, M.6
Al-Abdallat, A.7
Xia, Y.8
Lu, G.9
Ladunga, I.10
-
21
-
-
25144436494
-
Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants
-
Alvarez-Venegas R., Avramova Z. Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants. Nucleic Acids Res 2005, 33:5199-5207.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5199-5207
-
-
Alvarez-Venegas, R.1
Avramova, Z.2
-
22
-
-
77956878957
-
Growth habit determination by the balance of histone methylation activities in Arabidopsis
-
Ko J.H., Mitina I., Tamada Y., Hyun Y., Choi Y., Amasino R.M., Noh B., Noh Y.S. Growth habit determination by the balance of histone methylation activities in Arabidopsis. EMBO J 2010, 29:3208-3215.
-
(2010)
EMBO J
, vol.29
, pp. 3208-3215
-
-
Ko, J.H.1
Mitina, I.2
Tamada, Y.3
Hyun, Y.4
Choi, Y.5
Amasino, R.M.6
Noh, B.7
Noh, Y.S.8
-
23
-
-
78649811780
-
SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis
-
Guo L., Yu Y., Law J.A., Zhang X. SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis. Proc Natl Acad Sci USA 2010, 107:18557-18562.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 18557-18562
-
-
Guo, L.1
Yu, Y.2
Law, J.A.3
Zhang, X.4
-
24
-
-
78649509747
-
Arabidopsis SET DOMAIN GROUP2 is required for H3K4 trimethylation and is crucial for both sporophyte and gametophyte development
-
Berr A., McCallum E.J., Menard R., Meyer D., Fuchs J., Dong A., Shen W.H. Arabidopsis SET DOMAIN GROUP2 is required for H3K4 trimethylation and is crucial for both sporophyte and gametophyte development. Plant Cell 2010, 22:3232-3248.
-
(2010)
Plant Cell
, vol.22
, pp. 3232-3248
-
-
Berr, A.1
McCallum, E.J.2
Menard, R.3
Meyer, D.4
Fuchs, J.5
Dong, A.6
Shen, W.H.7
-
25
-
-
77955925952
-
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases
-
Jacob Y., Stroud H., Leblanc C., Feng S., Zhuo L., Caro E., Hassel C., Gutierrez C., Michaels S.D., Jacobsen S.E. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature 2010, 466:987-991.
-
(2010)
Nature
, vol.466
, pp. 987-991
-
-
Jacob, Y.1
Stroud, H.2
Leblanc, C.3
Feng, S.4
Zhuo, L.5
Caro, E.6
Hassel, C.7
Gutierrez, C.8
Michaels, S.D.9
Jacobsen, S.E.10
-
26
-
-
34249825181
-
Polycomb group and trithorax group proteins in Arabidopsis
-
Pien S., Grossniklaus U. Polycomb group and trithorax group proteins in Arabidopsis. Biochim Biophys Acta 2007, 1769:375-382.
-
(2007)
Biochim Biophys Acta
, vol.1769
, pp. 375-382
-
-
Pien, S.1
Grossniklaus, U.2
-
27
-
-
69449097106
-
Diversity of Polycomb group complexes in plants: same rules, different players?
-
Hennig L., Derkacheva M. Diversity of Polycomb group complexes in plants: same rules, different players?. Trends Genet 2009, 25:414-423.
-
(2009)
Trends Genet
, vol.25
, pp. 414-423
-
-
Hennig, L.1
Derkacheva, M.2
-
28
-
-
34249068213
-
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
-
Zhang X., Clarenz O., Cokus S., Bernatavichute Y.V., Pellegrini M., Goodrich J., Jacobsen S.E. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol 2007, 5:e129.
-
(2007)
PLoS Biol
, vol.5
-
-
Zhang, X.1
Clarenz, O.2
Cokus, S.3
Bernatavichute, Y.V.4
Pellegrini, M.5
Goodrich, J.6
Jacobsen, S.E.7
-
29
-
-
33745225872
-
Genome-wide analysis of Polycomb targets in Drosophila melanogaster
-
Schwartz Y.B., Kahn T.G., Nix D.A., Li X.Y., Bourgon R., Biggin M., Pirrotta V. Genome-wide analysis of Polycomb targets in Drosophila melanogaster. Nat Genet 2006, 38:700-705.
-
(2006)
Nat Genet
, vol.38
, pp. 700-705
-
-
Schwartz, Y.B.1
Kahn, T.G.2
Nix, D.A.3
Li, X.Y.4
Bourgon, R.5
Biggin, M.6
Pirrotta, V.7
-
30
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein B.E., Mikkelsen T.S., Xie X., Kamal M., Huebert D.J., Cuff J., Fry B., Meissner A., Wernig M., Plath K., et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 2006, 125:315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
31
-
-
33745258986
-
Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster
-
Tolhuis B., de Wit E., Muijrers I., Teunissen H., Talhout W., van Steensel B., van Lohuizen M. Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster. Nat Genet 2006, 38:694-699.
-
(2006)
Nat Genet
, vol.38
, pp. 694-699
-
-
Tolhuis, B.1
de Wit, E.2
Muijrers, I.3
Teunissen, H.4
Talhout, W.5
van Steensel, B.6
van Lohuizen, M.7
-
32
-
-
44649200464
-
Polycomb complexes and epigenetic states
-
Schwartz Y.B., Pirrotta V. Polycomb complexes and epigenetic states. Curr Opin Cell Biol 2008, 20:266-273.
-
(2008)
Curr Opin Cell Biol
, vol.20
, pp. 266-273
-
-
Schwartz, Y.B.1
Pirrotta, V.2
-
33
-
-
65349151439
-
Biochemical mechanisms of gene regulation by polycomb group protein complexes
-
Muller J., Verrijzer P. Biochemical mechanisms of gene regulation by polycomb group protein complexes. Curr Opin Genet Dev 2009, 19:150-158.
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 150-158
-
-
Muller, J.1
Verrijzer, P.2
-
34
-
-
33845799903
-
Polycomb silencing mechanisms and the management of genomic programmes
-
Schwartz Y.B., Pirrotta V. Polycomb silencing mechanisms and the management of genomic programmes. Nat Rev Genet 2007, 8:9-22.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 9-22
-
-
Schwartz, Y.B.1
Pirrotta, V.2
-
35
-
-
34548472629
-
The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation
-
Zhang X., Germann S., Blus B.J., Khorasanizadeh S., Gaudin V., Jacobsen S.E. The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol 2007, 14:869-871.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 869-871
-
-
Zhang, X.1
Germann, S.2
Blus, B.J.3
Khorasanizadeh, S.4
Gaudin, V.5
Jacobsen, S.E.6
-
36
-
-
34347324121
-
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27
-
Turck F., Roudier F., Farrona S., Martin-Magniette M.L., Guillaume E., Buisine N., Gagnot S., Martienssen R.A., Coupland G., Colot V. Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet 2007, 3:e86.
-
(2007)
PLoS Genet
, vol.3
-
-
Turck, F.1
Roudier, F.2
Farrona, S.3
Martin-Magniette, M.L.4
Guillaume, E.5
Buisine, N.6
Gagnot, S.7
Martienssen, R.A.8
Coupland, G.9
Colot, V.10
-
37
-
-
33645522624
-
LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC
-
Mylne J.S., Barrett L., Tessadori F., Mesnage S., Johnson L., Bernatavichute Y.V., Jacobsen S.E., Fransz P., Dean C. LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci USA 2006, 103:5012-5017.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 5012-5017
-
-
Mylne, J.S.1
Barrett, L.2
Tessadori, F.3
Mesnage, S.4
Johnson, L.5
Bernatavichute, Y.V.6
Jacobsen, S.E.7
Fransz, P.8
Dean, C.9
-
38
-
-
47349093227
-
EMBRYONIC FLOWER1 participates in polycomb group-mediated AG gene silencing in Arabidopsis
-
Calonje M., Sanchez R., Chen L., Sung Z.R. EMBRYONIC FLOWER1 participates in polycomb group-mediated AG gene silencing in Arabidopsis. Plant Cell 2008, 20:277-291.
-
(2008)
Plant Cell
, vol.20
, pp. 277-291
-
-
Calonje, M.1
Sanchez, R.2
Chen, L.3
Sung, Z.R.4
-
39
-
-
57649188040
-
Polycomb silencing of KNOX genes confines shoot stem cell niches in Arabidopsis
-
Xu L., Shen W.H. Polycomb silencing of KNOX genes confines shoot stem cell niches in Arabidopsis. Curr Biol 2008, 18:1966-1971.
-
(2008)
Curr Biol
, vol.18
, pp. 1966-1971
-
-
Xu, L.1
Shen, W.H.2
-
40
-
-
47349129727
-
RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs
-
Sanchez-Pulido L., Devos D., Sung Z.R., Calonje M. RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs. BMC Genomics 2008, 9:308.
-
(2008)
BMC Genomics
, vol.9
, pp. 308
-
-
Sanchez-Pulido, L.1
Devos, D.2
Sung, Z.R.3
Calonje, M.4
-
41
-
-
0035282573
-
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
-
Lachner M., O'Carroll D., Rea S., Mechtler K., Jenuwein T. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 2001, 410:116-120.
-
(2001)
Nature
, vol.410
, pp. 116-120
-
-
Lachner, M.1
O'Carroll, D.2
Rea, S.3
Mechtler, K.4
Jenuwein, T.5
-
42
-
-
0035815360
-
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly
-
Nakayama J., Rice J.C., Strahl B.D., Allis C.D., Grewal S.I. Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science 2001, 292:110-113.
-
(2001)
Science
, vol.292
, pp. 110-113
-
-
Nakayama, J.1
Rice, J.C.2
Strahl, B.D.3
Allis, C.D.4
Grewal, S.I.5
-
43
-
-
0035282458
-
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
-
Bannister A.J., Zegerman P., Partridge J.F., Miska E.A., Thomas J.O., Allshire R.C., Kouzarides T. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 2001, 410:120-124.
-
(2001)
Nature
, vol.410
, pp. 120-124
-
-
Bannister, A.J.1
Zegerman, P.2
Partridge, J.F.3
Miska, E.A.4
Thomas, J.O.5
Allshire, R.C.6
Kouzarides, T.7
-
44
-
-
0035903443
-
Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3
-
Jacobs S.A., Taverna S.D., Zhang Y., Briggs S.D., Li J., Eissenberg J.C., Allis C.D., Khorasanizadeh S. Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3. EMBO J 2001, 20:5232-5241.
-
(2001)
EMBO J
, vol.20
, pp. 5232-5241
-
-
Jacobs, S.A.1
Taverna, S.D.2
Zhang, Y.3
Briggs, S.D.4
Li, J.5
Eissenberg, J.C.6
Allis, C.D.7
Khorasanizadeh, S.8
-
45
-
-
33646048752
-
Chromosomal histone modification patterns-from conservation to diversity
-
Fuchs J., Demidov D., Houben A., Schubert I. Chromosomal histone modification patterns-from conservation to diversity. Trends Plant Sci 2006, 11:199-208.
-
(2006)
Trends Plant Sci
, vol.11
, pp. 199-208
-
-
Fuchs, J.1
Demidov, D.2
Houben, A.3
Schubert, I.4
-
46
-
-
52349089796
-
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
-
Bernatavichute Y.V., Zhang X., Cokus S., Pellegrini M., Jacobsen S.E. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS ONE 2008, 3:e3156.
-
(2008)
PLoS ONE
, vol.3
-
-
Bernatavichute, Y.V.1
Zhang, X.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
47
-
-
0034632829
-
Regulation of chromatin structure by site-specific histone H3 methyltransferases
-
Rea S., Eisenhaber F., O'Carroll D., Strahl B.D., Sun Z.W., Schmid M., Opravil S., Mechtler K., Ponting C.P., Allis C.D., et al. Regulation of chromatin structure by site-specific histone H3 methyltransferases. Nature 2000, 406:593-599.
-
(2000)
Nature
, vol.406
, pp. 593-599
-
-
Rea, S.1
Eisenhaber, F.2
O'Carroll, D.3
Strahl, B.D.4
Sun, Z.W.5
Schmid, M.6
Opravil, S.7
Mechtler, K.8
Ponting, C.P.9
Allis, C.D.10
-
48
-
-
0019739817
-
Isolation of dominant suppressor mutations for position-effect variegation in Drosophila melanogaster
-
Reuter G., Wolff I. Isolation of dominant suppressor mutations for position-effect variegation in Drosophila melanogaster. Mol Gen Genet 1981, 182:516-519.
-
(1981)
Mol Gen Genet
, vol.182
, pp. 516-519
-
-
Reuter, G.1
Wolff, I.2
-
49
-
-
17944380227
-
Loss of the suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability
-
Peters A.H., O'Carroll D., Scherthan H., Mechtler K., Sauer S., Schofer C., Weipoltshammer K., Pagani M., Lachner M., Kohlmaier A., et al. Loss of the suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability. Cell 2001, 107:323-337.
-
(2001)
Cell
, vol.107
, pp. 323-337
-
-
Peters, A.H.1
O'Carroll, D.2
Scherthan, H.3
Mechtler, K.4
Sauer, S.5
Schofer, C.6
Weipoltshammer, K.7
Pagani, M.8
Lachner, M.9
Kohlmaier, A.10
-
50
-
-
11144354402
-
Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana
-
Jackson J.P., Johnson L., Jasencakova Z., Zhang X., PerezBurgos L., Singh P.B., Cheng X., Schubert I., Jenuwein T., Jacobsen S.E. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma 2004, 112:308-315.
-
(2004)
Chromosoma
, vol.112
, pp. 308-315
-
-
Jackson, J.P.1
Johnson, L.2
Jasencakova, Z.3
Zhang, X.4
PerezBurgos, L.5
Singh, P.B.6
Cheng, X.7
Schubert, I.8
Jenuwein, T.9
Jacobsen, S.E.10
-
51
-
-
12244271065
-
An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation
-
Malagnac F., Bartee L., Bender J. An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J 2002, 21:6842-6852.
-
(2002)
EMBO J
, vol.21
, pp. 6842-6852
-
-
Malagnac, F.1
Bartee, L.2
Bender, J.3
-
52
-
-
27944500697
-
H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
-
Ebbs M.L., Bartee L., Bender J. H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases. Mol Cell Biol 2005, 25:10507-10515.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 10507-10515
-
-
Ebbs, M.L.1
Bartee, L.2
Bender, J.3
-
53
-
-
33745454548
-
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
-
Ebbs M.L., Bender J. Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 2006, 18:1166-1176.
-
(2006)
Plant Cell
, vol.18
, pp. 1166-1176
-
-
Ebbs, M.L.1
Bender, J.2
-
54
-
-
9144260620
-
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3
-
Lindroth A.M., Shultis D., Jasencakova Z., Fuchs J., Johnson L., Schubert D., Patnaik D., Pradhan S., Goodrich J., Schubert I., et al. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J 2004, 23:4286-4296.
-
(2004)
EMBO J
, vol.23
, pp. 4286-4296
-
-
Lindroth, A.M.1
Shultis, D.2
Jasencakova, Z.3
Fuchs, J.4
Johnson, L.5
Schubert, D.6
Patnaik, D.7
Pradhan, S.8
Goodrich, J.9
Schubert, I.10
-
55
-
-
33846931283
-
The SRA methyl-cytosine-binding domain links DNA and histone methylation
-
Johnson L.M., Bostick M., Zhang X., Kraft E., Henderson I., Callis J., Jacobsen S.E. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol 2007, 17:379-384.
-
(2007)
Curr Biol
, vol.17
, pp. 379-384
-
-
Johnson, L.M.1
Bostick, M.2
Zhang, X.3
Kraft, E.4
Henderson, I.5
Callis, J.6
Jacobsen, S.E.7
-
56
-
-
77953809924
-
DNA methylation and the formation of heterochromatin in Neurospora crassa
-
Rountree M.R., Selker E.U. DNA methylation and the formation of heterochromatin in Neurospora crassa. Heredity 2010, 105:38-44.
-
(2010)
Heredity
, vol.105
, pp. 38-44
-
-
Rountree, M.R.1
Selker, E.U.2
-
57
-
-
77956504685
-
Evolution of eukaryotic DNA methylation and the pursuit of safer sex
-
Zemach A., Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr Biol 2010, 20:R780-785.
-
(2010)
Curr Biol
, vol.20
-
-
Zemach, A.1
Zilberman, D.2
-
58
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., Feng S., Zhang X., Chen Z., Merriman B., Haudenschild C.D., Pradhan S., Nelson S.F., Pellegrini M., Jacobsen S.E. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008, 452:215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
59
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R., O'Malley R.C., Tonti-Filippini J., Gregory B.D., Berry C.C., Millar A.H., Ecker J.R. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008, 133:523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
60
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
Zhang X., Yazaki J., Sundaresan A., Cokus S., Chan S.W., Chen H., Henderson I.R., Shinn P., Pellegrini M., Jacobsen S.E., et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 2006, 126:1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
-
61
-
-
12544254467
-
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
-
Tran R.K., Henikoff J.G., Zilberman D., Ditt R.F., Jacobsen S.E., Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol 2005, 15:154-159.
-
(2005)
Curr Biol
, vol.15
, pp. 154-159
-
-
Tran, R.K.1
Henikoff, J.G.2
Zilberman, D.3
Ditt, R.F.4
Jacobsen, S.E.5
Henikoff, S.6
-
62
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman D., Gehring M., Tran R.K., Ballinger T., Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2007, 39:61-69.
-
(2007)
Nat Genet
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
-
63
-
-
67149119197
-
Genome-wide demethylation of Arabidopsis endosperm
-
Hsieh T.F., Ibarra C.A., Silva P., Zemach A., Eshed-Williams L., Fischer R.L., Zilberman D. Genome-wide demethylation of Arabidopsis endosperm. Science 2009, 324:1451-1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.F.1
Ibarra, C.A.2
Silva, P.3
Zemach, A.4
Eshed-Williams, L.5
Fischer, R.L.6
Zilberman, D.7
-
64
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder J.A., Walsh C.P., Bestor T.H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 1997, 13:335-340.
-
(1997)
Trends Genet
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
65
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu R.K., Feng S., Bernatavichute Y.V., Chen P.Y., Stroud H., Yu Y., Hetzel J.A., Kuo F., Kim J., Cokus S.J., et al. Relationship between nucleosome positioning and DNA methylation. Nature 2010, 466:388-392.
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
Yu, Y.6
Hetzel, J.A.7
Kuo, F.8
Kim, J.9
Cokus, S.J.10
-
66
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
Laurent L., Wong E., Li G., Huynh T., Tsirigos A., Ong C.T., Low H.M., Kin Sung K.W., Rigoutsos I., Loring J., et al. Dynamic changes in the human methylome during differentiation. Genome Res 2010, 20:320-331.
-
(2010)
Genome Res
, vol.20
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
Huynh, T.4
Tsirigos, A.5
Ong, C.T.6
Low, H.M.7
Kin Sung, K.W.8
Rigoutsos, I.9
Loring, J.10
-
67
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll M.G., Bestor T.H. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005, 74:481-514.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
68
-
-
34547725157
-
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
-
Ooi S.K., Qiu C., Bernstein E., Li K., Jia D., Yang Z., Erdjument-Bromage H., Tempst P., Lin S.P., Allis C.D., et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 2007, 448:714-717.
-
(2007)
Nature
, vol.448
, pp. 714-717
-
-
Ooi, S.K.1
Qiu, C.2
Bernstein, E.3
Li, K.4
Jia, D.5
Yang, Z.6
Erdjument-Bromage, H.7
Tempst, P.8
Lin, S.P.9
Allis, C.D.10
-
69
-
-
41649116098
-
DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
-
Kuramochi-Miyagawa S., Watanabe T., Gotoh K., Totoki Y., Toyoda A., Ikawa M., Asada N., Kojima K., Yamaguchi Y., Ijiri T.W., et al. DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. Genes Dev 2008, 22:908-917.
-
(2008)
Genes Dev
, vol.22
, pp. 908-917
-
-
Kuramochi-Miyagawa, S.1
Watanabe, T.2
Gotoh, K.3
Totoki, Y.4
Toyoda, A.5
Ikawa, M.6
Asada, N.7
Kojima, K.8
Yamaguchi, Y.9
Ijiri, T.W.10
-
70
-
-
0016692220
-
X inactivation, differentiation, and DNA methylation
-
Riggs A.D. X inactivation, differentiation, and DNA methylation. Cytogenet Cell Genet 1975, 14:9-25.
-
(1975)
Cytogenet Cell Genet
, vol.14
, pp. 9-25
-
-
Riggs, A.D.1
-
71
-
-
33846961476
-
VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization
-
Woo H.R., Pontes O., Pikaard C.S., Richards E.J. VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. Genes Dev 2007, 21:267-277.
-
(2007)
Genes Dev
, vol.21
, pp. 267-277
-
-
Woo, H.R.1
Pontes, O.2
Pikaard, C.S.3
Richards, E.J.4
-
72
-
-
34648833002
-
UHRF1 plays a role in maintaining DNA methylation in mammalian cells
-
Bostick M., Kim J.K., Esteve P.O., Clark A., Pradhan S., Jacobsen S.E. UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science 2007, 317:1760-1764.
-
(2007)
Science
, vol.317
, pp. 1760-1764
-
-
Bostick, M.1
Kim, J.K.2
Esteve, P.O.3
Clark, A.4
Pradhan, S.5
Jacobsen, S.E.6
-
73
-
-
36849072573
-
The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA
-
Sharif J., Muto M., Takebayashi S., Suetake I., Iwamatsu A., Endo T.A., Shinga J., Mizutani-Koseki Y., Toyoda T., Okamura K., et al. The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA. Nature 2007, 450:908-912.
-
(2007)
Nature
, vol.450
, pp. 908-912
-
-
Sharif, J.1
Muto, M.2
Takebayashi, S.3
Suetake, I.4
Iwamatsu, A.5
Endo, T.A.6
Shinga, J.7
Mizutani-Koseki, Y.8
Toyoda, T.9
Okamura, K.10
-
74
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R., Pelizzola M., Dowen R.H., Hawkins R.D., Hon G., Tonti-Filippini J., Nery J.R., Lee L., Ye Z., Ngo Q.M., et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 2009, 462:315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.M.10
-
75
-
-
77953644347
-
Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases
-
Mosammaparast N., Shi Y. Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases. Annu Rev Biochem 2010, 79:155-179.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 155-179
-
-
Mosammaparast, N.1
Shi, Y.2
|