메뉴 건너뛰기




Volumn 261, Issue 6, 1999, Pages 883-891

Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes

Author keywords

Barley; copia; Retrotransposon; Transposable element; Wheat

Indexed keywords

PLANT DNA; RNA DIRECTED DNA POLYMERASE;

EID: 0032766092     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00008635     Document Type: Article
Times cited : (91)

References (40)
  • 1
    • 0031135862 scopus 로고    scopus 로고
    • LINEs and Alus - The poly a connection
    • Boeke JD (1997) LINEs and Alus - the poly A connection. Nature Genet 16:6-7
    • (1997) Nature Genet , vol.16 , pp. 6-7
    • Boeke, J.D.1
  • 3
    • 0031782964 scopus 로고    scopus 로고
    • Ty1-copia class retrotransposon insertion site polymorphism for linkage and diversity analysis in pea
    • Ellis THN, Poyser SJ, Knox MR, Vershinin AV, Ambrose MJ (1998) Ty1-copia class retrotransposon insertion site polymorphism for linkage and diversity analysis in pea. Mol Gen Genet 260:9-19
    • (1998) Mol Gen Genet , vol.260 , pp. 9-19
    • Ellis, T.H.N.1    Poyser, S.J.2    Knox, M.R.3    Vershinin, A.V.4    Ambrose, M.J.5
  • 4
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • Feng DF, Doolittle RF (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol 25:351-360
    • (1987) J Mol Evol , vol.25 , pp. 351-360
    • Feng, D.F.1    Doolittle, R.F.2
  • 5
    • 0025025261 scopus 로고
    • Progressive alignment and phylogenetic tree construction of protein sequences
    • Feng DF, Doolittle RF (1990) Progressive alignment and phylogenetic tree construction of protein sequences. Methods Enzymol 183:375-387
    • (1990) Methods Enzymol , vol.183 , pp. 375-387
    • Feng, D.F.1    Doolittle, R.F.2
  • 7
    • 0026516955 scopus 로고
    • Extreme heterogeneity of Ty-copia group retrotransposons in plants
    • Flavell AJ, Smith DB, Kumar A (1992b) Extreme heterogeneity of Ty-copia group retrotransposons in plants. Mol Gen Genet 231:233-242
    • (1992) Mol Gen Genet , vol.231 , pp. 233-242
    • Flavell, A.J.1    Smith, D.B.2    Kumar, A.3
  • 8
    • 0009604799 scopus 로고
    • RFLP mapping in wheat: Progress and problems
    • Gustafson JL (ed). Plenum Press, New York
    • Gale MD, Chao S, Sharp P (1990) RFLP mapping in wheat: progress and problems. In: Gustafson JL (ed) Gene manipulation in plant improvement II. Plenum Press, New York, pp 353-363
    • (1990) Gene Manipulation in Plant Improvement II , pp. 353-363
    • Gale, M.D.1    Chao, S.2    Sharp, P.3
  • 9
    • 0024978849 scopus 로고
    • Tntl, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
    • Grandbastien M-A, Spielmann A, Caboche M (1989) Tntl, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337:376-380
    • (1989) Nature , vol.337 , pp. 376-380
    • Grandbastien, M.-A.1    Spielmann, A.2    Caboche, M.3
  • 10
    • 0027168422 scopus 로고
    • Activation of tobacco retrotransposons during tissue culture
    • Hirochika H (1993) Activation of tobacco retrotransposons during tissue culture. EMBO J 12:2521-2528
    • (1993) EMBO J , vol.12 , pp. 2521-2528
    • Hirochika, H.1
  • 11
    • 0027277083 scopus 로고
    • Ty1-copia group retrotransposons as ubiquitous components of plant genomes
    • Hirochika H, Hirochika R (1993) Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn J Genet 68:35-46
    • (1993) Jpn J Genet , vol.68 , pp. 35-46
    • Hirochika, H.1    Hirochika, R.2
  • 16
    • 0032055154 scopus 로고    scopus 로고
    • The genomic organization of non-LTR retrotransposons (LINEs) from three Beta species and five other angiosperms
    • Kubis SE, Heslop-Harrison JS, Desel C, Schmidt T (1998) The genomic organization of non-LTR retrotransposons (LINEs) from three Beta species and five other angiosperms. Plant Mol Biol 36:821-831
    • (1998) Plant Mol Biol , vol.36 , pp. 821-831
    • Kubis, S.E.1    Heslop-Harrison, J.S.2    Desel, C.3    Schmidt, T.4
  • 17
    • 0031453312 scopus 로고    scopus 로고
    • The Ty1-copia group retrotransposons in plants: Genomic organisation, evolution and use as molecular markers
    • Kumar A, Pearce SR, McLean K, Harrison G, Heslop-Harrison JS, Waugh R, Flavell AJ (1997) The Ty1-copia group retrotransposons in plants: genomic organisation, evolution and use as molecular markers. Genetica 100:205-217
    • (1997) Genetica , vol.100 , pp. 205-217
    • Kumar, A.1    Pearce, S.R.2    McLean, K.3    Harrison, G.4    Heslop-Harrison, J.S.5    Waugh, R.6    Flavell, A.J.7
  • 19
    • 0027651273 scopus 로고
    • BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.)
    • Manninen I, Schulman A (1993) BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol Biol 22:829-846
    • (1993) Plant Mol Biol , vol.22 , pp. 829-846
    • Manninen, I.1    Schulman, A.2
  • 20
    • 0029955972 scopus 로고    scopus 로고
    • Wheat retrotransposon families identified by reverse transcriptase domain analysis
    • Matsuoka Y, Tsunewaki K (1996) Wheat retrotransposon families identified by reverse transcriptase domain analysis. Mol Biol Evol 13:1384-1392
    • (1996) Mol Biol Evol , vol.13 , pp. 1384-1392
    • Matsuoka, Y.1    Tsunewaki, K.2
  • 21
    • 0031427358 scopus 로고    scopus 로고
    • Presence of wheat retrotransposons in Gramineae species and the origin of wheat retrotransposon families
    • Matsuoka Y, Tsunewaki K (1997a) Presence of wheat retrotransposons in Gramineae species and the origin of wheat retrotransposon families. Genes Genet Syst 72:335-343
    • (1997) Genes Genet Syst , vol.72 , pp. 335-343
    • Matsuoka, Y.1    Tsunewaki, K.2
  • 22
    • 0031426357 scopus 로고    scopus 로고
    • Origin and transmission of some types of family 1 wheat retrotransposons in the two related genera Triticum and Aegilops
    • Matsuoka Y, Tsunewaki K (1997b) Origin and transmission of some types of family 1 wheat retrotransposons in the two related genera Triticum and Aegilops. Genes Genet Syst 72:345-351
    • (1997) Genes Genet Syst , vol.72 , pp. 345-351
    • Matsuoka, Y.1    Tsunewaki, K.2
  • 23
    • 0033026625 scopus 로고    scopus 로고
    • Evolutionary dynamics of Ty1-copia group retrotransposons in grass shown by reverse transcriptase dfomain analysis
    • Matsuoka Y, Tsunekawi K (1999) Evolutionary dynamics of Ty1-copia group retrotransposons in grass shown by reverse transcriptase dfomain analysis. Mol Biol Evol 16:208-217
    • (1999) Mol Biol Evol , vol.16 , pp. 208-217
    • Matsuoka, Y.1    Tsunekawi, K.2
  • 24
    • 0027033883 scopus 로고
    • Sequence analysis of WIS-2-1A, a retrotransposon-like element from wheat
    • Murphy GJ, Lucas H, Moore G, Flavell RB (1992) Sequence analysis of WIS-2-1A, a retrotransposon-like element from wheat. Plant Mol Biol 20:991-995
    • (1992) Plant Mol Biol , vol.20 , pp. 991-995
    • Murphy, G.J.1    Lucas, H.2    Moore, G.3    Flavell, R.B.4
  • 25
    • 0030771475 scopus 로고    scopus 로고
    • RIRE1, a retrotransposon from wild rice Oryza australiensis
    • Noma K Nakajima R, Ohtsubo H, Ohtsubo E (1997) RIRE1, a retrotransposon from wild rice Oryza australiensis. Genes Genet Syst 72:131-140
    • (1997) Genes Genet Syst , vol.72 , pp. 131-140
    • Noma, K.1    Nakajima, R.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 26
    • 0029986858 scopus 로고    scopus 로고
    • The Ty1-copia group retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localisation
    • Pearce SR, Harrison G, Li D, Heslop-Harrison JS, Kumar A, Flavell AJ (1996) The Ty1-copia group retrotransposons in Vicia species: copy number, sequence heterogeneity and chromosomal localisation. Mol Gen Genet 250:305-315
    • (1996) Mol Gen Genet , vol.250 , pp. 305-315
    • Pearce, S.R.1    Harrison, G.2    Li, D.3    Heslop-Harrison, J.S.4    Kumar, A.5    Flavell, A.J.6
  • 27
    • 0031252093 scopus 로고    scopus 로고
    • Characterisation and genomic organisation of Ty1-copia group retrotransposons in rye (Secale cereale)
    • Pearce SR, Harrison G, Heslop-Harrison JS, Flavell AJ, Kumar A (1997) Characterisation and genomic organisation of Ty1-copia group retrotransposons in rye (Secale cereale). Genome 40:617-625
    • (1997) Genome , vol.40 , pp. 617-625
    • Pearce, S.R.1    Harrison, G.2    Heslop-Harrison, J.S.3    Flavell, A.J.4    Kumar, A.5
  • 28
    • 0025847497 scopus 로고
    • Specific expression of the tobacco Tnt1 retrotransposon in protoplasts
    • Pouteau S, Huttner E, Grandbastien M-A, Caboche M (1991) Specific expression of the tobacco Tnt1 retrotransposon in protoplasts. EMBO J 10:1911-1918
    • (1991) EMBO J , vol.10 , pp. 1911-1918
    • Pouteau, S.1    Huttner, E.2    Grandbastien, M.-A.3    Caboche, M.4
  • 29
    • 0028172055 scopus 로고
    • Molecular evolution of magellan, a maize Ty3/gypsy-like retrotransposon
    • Purugganan MD, Wessier SR (1994) Molecular evolution of magellan, a maize Ty3/gypsy-like retrotransposon. Proc Natl Acad Sci USA 91:11674-11678
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11674-11678
    • Purugganan, M.D.1    Wessier, S.R.2
  • 32
    • 0030106262 scopus 로고    scopus 로고
    • Retrotransposon BARE-1 is a major dispersed component of the barley (Hordeum vulgare L.) genome
    • Suoniemi A, Anamthawat-Jonsson K, Arna T, Schulman AH (1996a) Retrotransposon BARE-1 is a major dispersed component of the barley (Hordeum vulgare L.) genome. Plant Mol Biol 30:1321-1329
    • (1996) Plant Mol Biol , vol.30 , pp. 1321-1329
    • Suoniemi, A.1    Anamthawat-Jonsson, K.2    Arna, T.3    Schulman, A.H.4
  • 33
    • 0030152180 scopus 로고    scopus 로고
    • The BARE-1 retrotransposon is transcribed in barley from an LTR promoter active in transient assays
    • Suoniemi A, Narvanto N, Schulman AH (1996b) The BARE-1 retrotransposon is transcribed in barley from an LTR promoter active in transient assays. Plant Mol Biol 31:295-306
    • (1996) Plant Mol Biol , vol.31 , pp. 295-306
    • Suoniemi, A.1    Narvanto, N.2    Schulman, A.H.3
  • 34
    • 0032033103 scopus 로고    scopus 로고
    • Gypsy-like retrotransposons are widespread in the plant kingdom
    • Suoniemi A, Tanskanen J, Schulman AH (1998) Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J 13:699-705
    • (1998) Plant J , vol.13 , pp. 699-705
    • Suoniemi, A.1    Tanskanen, J.2    Schulman, A.H.3
  • 35
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 36
    • 0027190705 scopus 로고
    • Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.)
    • Vanderwiel PL, Voytas D, Wendel JF (1993) Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.). J Mol Evol 36:429-447
    • (1993) J Mol Evol , vol.36 , pp. 429-447
    • Vanderwiel, P.L.1    Voytas, D.2    Wendel, J.F.3
  • 38
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of BARE-1 retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)
    • Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BT, Powell W (1997) Genetic distribution of BARE-1 retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687-694
    • (1997) Mol Gen Genet , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.T.6    Powell, W.7
  • 39
    • 0028053733 scopus 로고
    • Retrotransposons in the flanking regions of normal plant genes: A role for copia-like elements in the evolution of gene structure and expression
    • White SE, Habera LF, Wessler SR (1994) Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression. Proc Natl Acad Sci USA 91:11792-11796
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11792-11796
    • White, S.E.1    Habera, L.F.2    Wessler, S.R.3
  • 40
    • 0024712231 scopus 로고
    • Date of the monocot-dicot divergence estimated from the chloroplast DNA sequence data
    • Wolfe KH, Gouy M, Yang Y-W, Sharp PM, Li W-H (1989) Date of the monocot-dicot divergence estimated from the chloroplast DNA sequence data. Proc Natl Acad Sci USA 86:6201-6205
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 6201-6205
    • Wolfe, K.H.1    Gouy, M.2    Yang, Y.-W.3    Sharp, P.M.4    Li, W.-H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.