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Volumn 110, Issue 5, 2005, Pages 819-831

Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; BIODIVERSITY; BIOMARKERS; FRUITS; INFORMATION ANALYSIS;

EID: 17444395610     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-004-1837-z     Document Type: Article
Times cited : (153)

References (57)
  • 1
    • 0035674690 scopus 로고    scopus 로고
    • Use of microsatellites to evaluate genetic diversity and species relationships in the genus Lycopersicon
    • Alvarez AE, van de Wiel CCM, Smulders MJM, Vosman B (2001) Use of microsatellites to evaluate genetic diversity and species relationships in the genus Lycopersicon. Theor Appl Genet 103:1283-1292
    • (2001) Theor Appl Genet , vol.103 , pp. 1283-1292
    • Alvarez, A.E.1    Van De Wiel, C.C.M.2    Smulders, M.J.M.3    Vosman, B.4
  • 4
    • 0027136518 scopus 로고
    • Assessment of genetic variation in Avena sterilis using morphological traits, isozymes, and RFLPs
    • Beer SC, Goffreda J, Philips TD, Murphy JP, Sorrells ME (1994) Assessment of genetic variation in Avena sterilis using morphological traits, isozymes, and RFLPs. Crop Sci 33:1386-1393
    • (1994) Crop Sci , vol.33 , pp. 1386-1393
    • Beer, S.C.1    Goffreda, J.2    Philips, T.D.3    Murphy, J.P.4    Sorrells, M.E.5
  • 5
    • 0001741062 scopus 로고
    • Genetics of actin regulated sequences in tomato
    • Bernatzky R, Tanksley SD (1986) Genetics of actin regulated sequences in tomato. Theor Appl Genet 72:314-321
    • (1986) Theor Appl Genet , vol.72 , pp. 314-321
    • Bernatzky, R.1    Tanksley, S.D.2
  • 6
    • 0033977088 scopus 로고    scopus 로고
    • A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing
    • Budiman MA, Mao L, Wood TC, Wing RA (2000) A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing. Genome Res 10:129-136
    • (2000) Genome Res , vol.10 , pp. 129-136
    • Budiman, M.A.1    Mao, L.2    Wood, T.C.3    Wing, R.A.4
  • 7
    • 0030696840 scopus 로고    scopus 로고
    • Relationship between phenotypic and marker distances: Theoretical and experimental investigations
    • Burstin J, Charcosset A (1997) Relationship between phenotypic and marker distances: theoretical and experimental investigations. Heredity 79:477-483
    • (1997) Heredity , vol.79 , pp. 477-483
    • Burstin, J.1    Charcosset, A.2
  • 9
    • 0030265545 scopus 로고    scopus 로고
    • The promoter for tomato 3-hydroxy-3-methylglutaryl coenzyme A reductase gene 2 has unusual regulatory elements that direct high-level expression
    • Daraselia ND, Tarchevskaya S, Narita JO (1996) The promoter for tomato 3-hydroxy-3-methylglutaryl coenzyme A reductase gene 2 has unusual regulatory elements that direct high-level expression. Plant Physiol 112:727-733
    • (1996) Plant Physiol , vol.112 , pp. 727-733
    • Daraselia, N.D.1    Tarchevskaya, S.2    Narita, J.O.3
  • 10
    • 0030865553 scopus 로고    scopus 로고
    • Comparison of RFLP and morphological distances between maize Zea mays L. inbred lines. Consequences for germplasm protection purposes
    • Dillman C, Bar-Hen A, Guerin D, Charcosset A, Murigneux A (1997) Comparison of RFLP and morphological distances between maize Zea mays L. inbred lines. Consequences for germplasm protection purposes. Theor Appl Genet 95:92-102
    • (1997) Theor Appl Genet , vol.95 , pp. 92-102
    • Dillman, C.1    Bar-Hen, A.2    Guerin, D.3    Charcosset, A.4    Murigneux, A.5
  • 11
    • 0027994981 scopus 로고
    • Comparison of RAPD and RFLP genetic markers in determining genetic similarity among Brassica oleracea L. genotypes
    • dos Santos JB, Nienhuis J, Skroch P, Tivang J, Slocum MK (1994) Comparison of RAPD and RFLP genetic markers in determining genetic similarity among Brassica oleracea L. genotypes. Theor Appl Genet 87:909-915
    • (1994) Theor Appl Genet , vol.87 , pp. 909-915
    • Dos Santos, J.B.1    Nienhuis, J.2    Skroch, P.3    Tivang, J.4    Slocum, M.K.5
  • 12
    • 0031782964 scopus 로고    scopus 로고
    • Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea
    • Ellis THN, Poyser SJ, Knox MR, Vershinin AV, Ambrose MJ (1998) Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea. Mol Gen Genet 260:9-19
    • (1998) Mol Gen Genet , vol.260 , pp. 9-19
    • Ellis, T.H.N.1    Poyser, S.J.2    Knox, M.R.3    Vershinin, A.V.4    Ambrose, M.J.5
  • 13
    • 0036067301 scopus 로고    scopus 로고
    • Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognised as the non-California population of Coccidioides immitis
    • Fisher MC, Koenig GL, White TJ, Taylor JW (2002) Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognised as the non-California population of Coccidioides immitis. Mycologia 94:73-84
    • (2002) Mycologia , vol.94 , pp. 73-84
    • Fisher, M.C.1    Koenig, G.L.2    White, T.J.3    Taylor, J.W.4
  • 15
    • 0035993631 scopus 로고    scopus 로고
    • Applications of selective neutrality tests to molecular ecology
    • Ford MJ (2002) Applications of selective neutrality tests to molecular ecology. Mol Ecol 11:1245-1262
    • (2002) Mol Ecol , vol.11 , pp. 1245-1262
    • Ford, M.J.1
  • 16
    • 0036392821 scopus 로고    scopus 로고
    • Feasibility of integration of molecular markers and morphological descriptors in a real case study of a plant variety protection system for soybean
    • Giancola S, Marcucci Poltri S, Lacaze P, Hopp HE (2002) Feasibility of integration of molecular markers and morphological descriptors in a real case study of a plant variety protection system for soybean. Euphytica 127:95-113
    • (2002) Euphytica , vol.127 , pp. 95-113
    • Giancola, S.1    Marcucci Poltri, S.2    Lacaze, P.3    Hopp, H.E.4
  • 17
    • 0024978849 scopus 로고
    • Tnt1, a mobile retroviral-like transposable element of tobacco isolated via plant cell genetics
    • Grandbastien M-A, Spielmann A, Caboche M (1989) Tnt1, a mobile retroviral-like transposable element of tobacco isolated via plant cell genetics. Nature 337:376-380
    • (1989) Nature , vol.337 , pp. 376-380
    • Grandbastien, M.-A.1    Spielmann, A.2    Caboche, M.3
  • 18
    • 0032749802 scopus 로고    scopus 로고
    • Identifying the loci responsible for natural variation in fruit size and shape in tomato
    • Grandillo S, Ku HM, Tanksley SD (1999) Identifying the loci responsible for natural variation in fruit size and shape in tomato. Theor Appl Genet 99:978-987
    • (1999) Theor Appl Genet , vol.99 , pp. 978-987
    • Grandillo, S.1    Ku, H.M.2    Tanksley, S.D.3
  • 20
    • 75949146309 scopus 로고
    • The number of alleles that can be maintained in a finite population
    • Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725-738
    • (1964) Genetics , vol.49 , pp. 725-738
    • Kimura, M.1    Crow, J.F.2
  • 21
    • 0036939218 scopus 로고    scopus 로고
    • Extremely elongated tomato fruit controlled by four quantitative trait loci with epistatic interactions
    • van der Knaap E, Lippman ZB, Tanksley SD (2002) Extremely elongated tomato fruit controlled by four quantitative trait loci with epistatic interactions. Theor Appl Genet 104:241-247
    • (2002) Theor Appl Genet , vol.104 , pp. 241-247
    • Van Der Knaap, E.1    Lippman, Z.B.2    Tanksley, S.D.3
  • 24
    • 0027142793 scopus 로고
    • Nuclear RFLP between pepper cultivars
    • Lefebvre V, Palloix A, Rives M (1993) Nuclear RFLP between pepper cultivars. Euphytica 71:189-199
    • (1993) Euphytica , vol.71 , pp. 189-199
    • Lefebvre, V.1    Palloix, A.2    Rives, M.3
  • 25
    • 0035038039 scopus 로고    scopus 로고
    • Evaluation of genetic distances between pepper inbred lines for cultivar protection purposes: Comparison of AFLP, RAPD and phenotypic data
    • Lefebvre V, Goffinet B, Chauvet JC, Caromel B, Signoret P, Brand R, Palloix A (2001) Evaluation of genetic distances between pepper inbred lines for cultivar protection purposes: comparison of AFLP, RAPD and phenotypic data. Theor Appl Genet 102:741-750
    • (2001) Theor Appl Genet , vol.102 , pp. 741-750
    • Lefebvre, V.1    Goffinet, B.2    Chauvet, J.C.3    Caromel, B.4    Signoret, P.5    Brand, R.6    Palloix, A.7
  • 26
    • 0043124416 scopus 로고    scopus 로고
    • Comparison of the utility of barley retrotransposon families for genetic analysis by molecular marker techniques
    • Leigh F, Kalendar R, Lea V, Lee D, Donini P, Schulman AH (2003) Comparison of the utility of barley retrotransposon families for genetic analysis by molecular marker techniques. Mol Genet Genomics 269:464-474
    • (2003) Mol Genet Genomics , vol.269 , pp. 464-474
    • Leigh, F.1    Kalendar, R.2    Lea, V.3    Lee, D.4    Donini, P.5    Schulman, A.H.6
  • 28
    • 0030471846 scopus 로고    scopus 로고
    • Comparative analysis of genetic diversity in pea accessed by RFLP- and PCR-based methods
    • Lu J, Knox MR, Ambrose MJ, Brown JKM, Ellis THN (1996) Comparative analysis of genetic diversity in pea accessed by RFLP- and PCR-based methods. Theor Appl Genet 93:1103-1111
    • (1996) Theor Appl Genet , vol.93 , pp. 1103-1111
    • Lu, J.1    Knox, M.R.2    Ambrose, M.J.3    Brown, J.K.M.4    Ellis, T.H.N.5
  • 30
    • 0034755086 scopus 로고    scopus 로고
    • The mobility of the tobacco retrotransposon correlates with its transcriptional activation by fungal factors
    • Melayah D, Bonnivard E, Chalhoub B, Audeon C, Grandbastien M-A (2001) The mobility of the tobacco retrotransposon correlates with its transcriptional activation by fungal factors. Plant J 28:159-168
    • (2001) Plant J , vol.28 , pp. 159-168
    • Melayah, D.1    Bonnivard, E.2    Chalhoub, B.3    Audeon, C.4    Grandbastien, M.-A.5
  • 31
    • 0030920044 scopus 로고    scopus 로고
    • Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers
    • Nagaoka T, Ogihara Y (1997) Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor Appl Genet 94:597-602
    • (1997) Theor Appl Genet , vol.94 , pp. 597-602
    • Nagaoka, T.1    Ogihara, Y.2
  • 32
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 33
    • 0031154020 scopus 로고    scopus 로고
    • Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers
    • Olufowote JO, Xu Y, Chen X, Park WD, Beachell HM, Dilday RH, Goto M, McCouch SR (1997) Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers. Genome 40:370-378
    • (1997) Genome , vol.40 , pp. 370-378
    • Olufowote, J.O.1    Xu, Y.2    Chen, X.3    Park, W.D.4    Beachell, H.M.5    Dilday, R.H.6    Goto, M.7    McCouch, S.R.8
  • 34
    • 0031913117 scopus 로고    scopus 로고
    • Variation in Capsicum annuum revealed by RAPD and AFLP markers
    • Paran I, Aftergoot E, Shifriss C (1998) Variation in Capsicum annuum revealed by RAPD and AFLP markers. Euphytica 99:167-173
    • (1998) Euphytica , vol.99 , pp. 167-173
    • Paran, I.1    Aftergoot, E.2    Shifriss, C.3
  • 35
    • 0033197649 scopus 로고    scopus 로고
    • Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies
    • Pearce SR, Stuart-Rogers C, Knox MR, Kumar A, Ellis THN, Flavell AJ (1999) Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. Plant J 19:711-717
    • (1999) Plant J , vol.19 , pp. 711-717
    • Pearce, S.R.1    Stuart-Rogers, C.2    Knox, M.R.3    Kumar, A.4    Ellis, T.H.N.5    Flavell, A.J.6
  • 36
    • 0033799423 scopus 로고    scopus 로고
    • Pea Tyl-copia group retrotransposons: Transpositional activity and use as markers to study genetic diversity in Pisum
    • Pearce SR, Knox M, Ellis THN, Flavell AJ, Kumar A (2000) Pea Tyl-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum. Mol Gen Genet 263:898-907
    • (2000) Mol Gen Genet , vol.263 , pp. 898-907
    • Pearce, S.R.1    Knox, M.2    Ellis, T.H.N.3    Flavell, A.J.4    Kumar, A.5
  • 40
    • 0033653250 scopus 로고    scopus 로고
    • Ty1-copia-like retrotransposons of tomato (Lycopersicon esculentum Mill.)
    • Rogers SA, Pauls KP (2000) Ty1-copia-like retrotransposons of tomato (Lycopersicon esculentum Mill.). Genome 43:887-894
    • (2000) Genome , vol.43 , pp. 887-894
    • Rogers, S.A.1    Pauls, K.P.2
  • 42
    • 0028039401 scopus 로고
    • Direct comparison of levels of genetic variation in tomato detected by a GACA-containing microsatellite probe and by random amplified polymorphic DNA
    • Rus-Kortekaas W, Smulders MJM, Arens P, Vosman B (1994) Direct comparison of levels of genetic variation in tomato detected by a GACA-containing microsatellite probe and by random amplified polymorphic DNA. Genome 37:375-381
    • (1994) Genome , vol.37 , pp. 375-381
    • Rus-Kortekaas, W.1    Smulders, M.J.M.2    Arens, P.3    Vosman, B.4
  • 43
    • 0030766801 scopus 로고    scopus 로고
    • Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs
    • Russell JR, Fuller JD, Macaulay M, Hatz BG, Jahoor A, Powell W, Waugh R (1997) Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor Appl Genet 95:714-722
    • (1997) Theor Appl Genet , vol.95 , pp. 714-722
    • Russell, J.R.1    Fuller, J.D.2    Macaulay, M.3    Hatz, B.G.4    Jahoor, A.5    Powell, W.6    Waugh, R.7
  • 44
    • 0023375195 scopus 로고
    • The Neighbor Joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The Neighbor Joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 47
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 48
    • 3042567922 scopus 로고
    • Comparison of RFLP and RAPD markers to estimate genetic relationships within and among cruciferous species
    • Thormann CE, Ferreira ME, Camargo LEA, Tivang JG, Osborn TC (1994) Comparison of RFLP and RAPD markers to estimate genetic relationships within and among cruciferous species. Theor Appl Genet 85:976-984
    • (1994) Theor Appl Genet , vol.85 , pp. 976-984
    • Thormann, C.E.1    Ferreira, M.E.2    Camargo, L.E.A.3    Tivang, J.G.4    Osborn, T.C.5
  • 51
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence specific amplification polymorphisms (SSAP)
    • Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BBT, Powell W (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence specific amplification polymorphisms (SSAP). Mol Gen Genet 253:687-694
    • (1997) Mol Gen Genet , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.B.T.6    Powell, W.7
  • 52
    • 0018332021 scopus 로고
    • Inferences about linkage disequilibrium
    • Weir BS (1979) Inferences about linkage disequilibrium. Biometrics 35:235-254
    • (1979) Biometrics , vol.35 , pp. 235-254
    • Weir, B.S.1
  • 55
    • 0027970520 scopus 로고
    • Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice
    • Yang GP, Saghai Maroof MA, Xu CG, Zhang Q, Biyashev RM (1994) Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Mol Gen Genet 245:187-194
    • (1994) Mol Gen Genet , vol.245 , pp. 187-194
    • Yang, G.P.1    Saghai Maroof, M.A.2    Xu, C.G.3    Zhang, Q.4    Biyashev, R.M.5
  • 56
    • 0003377384 scopus 로고    scopus 로고
    • Population genetic analysis of codominant and dominant markers and quantitative traits
    • Yeh FC, Boyle TJB (1997) Population genetic analysis of codominant and dominant markers and quantitative traits. Belg J Bot 129:157
    • (1997) Belg J Bot , vol.129 , pp. 157
    • Yeh, F.C.1    Boyle, T.J.B.2
  • 57
    • 0033652834 scopus 로고    scopus 로고
    • An anchored AFLP- and retrotransposon-based map of diploid Avena
    • Yu GX, Wise RP (2000) An anchored AFLP- and retrotransposon-based map of diploid Avena. Genome 43:736-749
    • (2000) Genome , vol.43 , pp. 736-749
    • Yu, G.X.1    Wise, R.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.