In-depth view of structure, activity, and evolution of rice chromosome 10

Science

Volumn 300, Issue 5625, 2003, Pages 1566-1569

  Yu, Y ^a,c   Rambo, T ^a,c   Currie, J ^a,c   Saski, C ^a,c   Kim, H R ^a,c   Collura, K ^a,c   Thompson, S ^a,c   Simmons, J ^c   Yang, T J ^a,c   Nah, G ^a,c   Patel, A J ^c   Thurmond, S ^a,c   Henry, D ^c   Oates, R ^c   Palmer, M ^c   Pries, G ^c   Gibson, J ^c   Anderson, H ^c   Paradkar, M ^c   Crane, L ^c   Dale, J ^c   Carver, M B ^c   Wood, T ^c   Frisch, D ^c   Engler, F ^b,c   Soderlund, C ^b,c   Palmer, L E ^d   Tetylman, L ^d   Nascimento, L ^d   de la Bastide, M ^d   Spiegel, L ^d   Ware, D ^d   O'Shaughnessy, A ^d   Dike, S ^d   Dedhia, N ^d   Preston, R ^d   Huang, E ^d   Ferraro, K ^d   Kuit, K ^d   Miller, B ^d   Zutavern, T ^d   Katzenberger, F ^d   Muller, S ^d   Balija, V ^d   Martienssen, R A ^d   Stein, L ^d   Minx, P ^e   Johnson, D ^e   Cordum, H ^e   Mardis, E ^e   Cheng, Z ^f   Jiang, J ^f   Wilson, R ^e   McCombie, W R ^d   Wing, R A ^a,c   Yuan, Q ^g,h   Ouyang, S ^g,h   Liu, J ^g,h   Jones, K M ^g,h   Gansberger, K ^g,h   Moffat, K ^g,h   Hill, J ^g,h   Tsitrin, T ^g,h   Overton, L ^g,h   Bera, J ^g,h   Kim, M ^g,h   Jin, S ^g,h   Tallon, L ^g,h   Ciecko, A ^g,h   Pai, G ^g,h   van Aken, S ^g,h   Utterback, T ^g,h   Reidmuller, S ^g,h   Bormann, J ^g,h   Feldblyum, T ^g,h   Hsiao, J ^g,h   Zismann, V ^g,h   Blunt, S ^g,h   de Vazeilles, A ^g,h   Shaffer, T ^g,h   Koo, H ^g,h   Suh, B ^g,h   Yang, Q ^g,h   Haas, B ^g,h   Peterson, J ^g,h   Pertea, M ^g,h   Volfovsky, N ^g,h,i   Wortman, J ^g,h   White, O ^g,h   Salzberg, S L ^g,h,i   Fraser, C M ^g,h   Robin Buell, C ^g   Messing, J ^j   Song, R ^j   Fuks, G ^j   Llaca, V ^j   Kovchak, S ^j   Young, S ^j   Bowers, J E ^k   Paterson, A H ^k   Johns, M A ^l   Mao, L ^l   Pan, H ^m   Dean, R A ^m   more..

^a Arizona Genomics Institute   (United States)

^b UNIVERSITY OF ARIZONA   (United States)

^c CLEMSON UNIVERSITY   (United States)

^d Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

^e WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^f UNIVERSITY OF WISCONSIN MADISON   (United States)

^g J CRAIG VENTER INSTITUTE   (United States)

^h JOHNS HOPKINS UNIVERSITY   (United States)

ⁱ NATIONAL CANCER INSTITUTE   (United States)

^j RUTGERS UNIVERSITY   (United States)

^k UNIVERSITY OF GEORGIA   (United States)

^l NORTHERN ILLINOIS UNIVERSITY   (United States)

^m NORTH CAROLINA STATE UNIVERSITY   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

FINISHED SEQUENCES;

GENES; RESEARCH; STRUCTURE (COMPOSITION);

PLANTS (BOTANY);

GENETICS;

ARTICLE; CHROMOSOME 10; CHROMOSOME STRUCTURE; EVOLUTION; GENE EXPRESSION; GENE INSERTION; GENE SEQUENCE; GENOME; HETEROCHROMATIN; NONHUMAN; PRIORITY JOURNAL; RICE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

CEREALS; CHROMOSOMES, PLANT; COMPUTATIONAL BIOLOGY; DNA TRANSPOSABLE ELEMENTS; DNA, CHLOROPLAST; DNA, MITOCHONDRIAL; DNA, PLANT; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENES, PLANT; GENOME, PLANT; HETEROCHROMATIN; ORYZA SATIVA; PLANT DISEASES; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY; PROTEOME; REPETITIVE SEQUENCES, NUCLEIC ACID; RETROELEMENTS; SEQUENCE ANALYSIS, DNA; ZEA MAYS;

ZEA MAYS;

EID: 0038581538     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1083523     Document Type: Article

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27. Funding for the work is provided by grants to C.R.B. from the U.S. Department of Agriculture (USDA) (99-35317-8275), NSF (DBI-998282), and the U.S. Department of Energy (DOE) (DE-FG02-99ER20357); R.A.W. from USDA (2002-35317-12414) and NSF (DBI-0241181); A.H.P. from NSF (98-72649) and USDA (2001-35301-10595); J.M. from the Rutgers Reinvest program; L.M. from Northern Illinois University Foundation and The Plant Molecular Biology Center, Department of Biological Sciences, Northern Illinois University; and S.L.S. from NSF (KDI-9980088) and NIH (R01-LM06845). We thank T. Sasaki and B. Han for providing chromosome 1 and 4 pseudomolecule sequences before publication. We thank the Ministry of Agriculture, Forestry and Fisheries of Japan for the chromosome 10 restriction fragment length polymorphism markers and the P1 artificial chromosome library. We thank Monsanto and Syngenta for donating draft sequence and other data. We thank N. Jiang and S. Wessler (University of Georgia) for sharing their unpublished data for transposable element classification. We thank the Institute for Genomic Research Sequencing Core Facility and Bioinformatics Department, especially the closure efforts by M. Hance, B. Jarrahi, A. Stewart, M. Shvartsbeyn, and M. Krol. We thank M. Chen, G. Presting, J. Luis Goicoechea, E. Fang, and B. Blackmon for assistance in anchoring contigs to rice chromosome 10, and F. Wei for R-gene reanalysis.