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Volumn 262, Issue 4-5, 1999, Pages 703-713

Heterogeneity of the internal structure of PDR1, a family of Ty1/copia-like retrotransposons in pea

Author keywords

Biodiversity; Deletion hot spot; Pea; Retrotransposon rearrangements; Structural heterogeneity

Indexed keywords

DNA; MICROSATELLITE DNA;

EID: 0033376112     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380051132     Document Type: Article
Times cited : (25)

References (52)
  • 1
    • 0028301318 scopus 로고
    • Transduction of a cellular gene by a plant retroelement
    • Bureau T, White S, Wessler S (1994) Transduction of a cellular gene by a plant retroelement. Cell 77:479-80
    • (1994) Cell , vol.77 , pp. 479-480
    • Bureau, T.1    White, S.2    Wessler, S.3
  • 2
    • 0008563722 scopus 로고
    • Synthetic deoxyribo-oligonucleotides as templates for the DNA polymerase of Escherichia coli: New DNA-like polymers containing repeating nucleotide sequences
    • Byrd C, Ohtsuka E, Moon MW, Khorana HG (1965) Synthetic deoxyribo-oligonucleotides as templates for the DNA polymerase of Escherichia coli: new DNA-like polymers containing repeating nucleotide sequences. Proc Natl Acad Sci USA 53:79-86
    • (1965) Proc Natl Acad Sci USA , vol.53 , pp. 79-86
    • Byrd, C.1    Ohtsuka, E.2    Moon, M.W.3    Khorana, H.G.4
  • 3
    • 0021738478 scopus 로고
    • Dictyostelium transposable element DIRS-1 preferentially inserts into DIRS-1 sequences
    • Capello J, Cohen SM, Lodish HF (1984) Dictyostelium transposable element DIRS-1 preferentially inserts into DIRS-1 sequences. Mol Cell Biol 4:2207-2213
    • (1984) Mol Cell Biol , vol.4 , pp. 2207-2213
    • Capello, J.1    Cohen, S.M.2    Lodish, H.F.3
  • 4
    • 0029027625 scopus 로고
    • Sequence variability within the tobacco retrotransposon Tnt1 population
    • Casacuberta JM, Vernhettes S, Grandbastien M-A (1995) Sequence variability within the tobacco retrotransposon Tnt1 population. EMBO J 14:2670-2678
    • (1995) EMBO J , vol.14 , pp. 2670-2678
    • Casacuberta, J.M.1    Vernhettes, S.2    Grandbastien, M.-A.3
  • 5
    • 0031438820 scopus 로고    scopus 로고
    • Quasispecies in retrotransposons: A role for sequence variability in Tnt1 evolution
    • Casacuberta JM, Vernhettes S, Audeon C, Grandbastien, M-A (1997) Quasispecies in retrotransposons: a role for sequence variability in Tnt1 evolution. Genetica 100:109-117
    • (1997) Genetica , vol.100 , pp. 109-117
    • Casacuberta, J.M.1    Vernhettes, S.2    Audeon, C.3    Grandbastien, M.-A.4
  • 7
    • 0028980488 scopus 로고
    • Analysis of copia sequence variation within and between Drosophila species
    • Csink AK, McDonald JF (1995) Analysis of copia sequence variation within and between Drosophila species. Mol Biol Evol 12:83-93
    • (1995) Mol Biol Evol , vol.12 , pp. 83-93
    • Csink, A.K.1    McDonald, J.F.2
  • 8
    • 0031882495 scopus 로고    scopus 로고
    • Conserved subfamilies of the Drosophila HeT-A telomere-specific retrotransposon
    • Danilevskaya O, Lowehaupt K, Pardue ML (1998) Conserved subfamilies of the Drosophila HeT-A telomere-specific retrotransposon. Genetics 148:233-242
    • (1998) Genetics , vol.148 , pp. 233-242
    • Danilevskaya, O.1    Lowehaupt, K.2    Pardue, M.L.3
  • 13
    • 0031782964 scopus 로고    scopus 로고
    • Ty1-copia class retrotransposon insertion site polymorphism for linkage and diversity analysis in pea
    • Ellis THN, Poyser SJ, Knox MR, Vershinin AV, Ambrose MJ (1998) Ty1-copia class retrotransposon insertion site polymorphism for linkage and diversity analysis in pea. Mol Gen Genet 260:9-19
    • (1998) Mol Gen Genet , vol.260 , pp. 9-19
    • Ellis, T.H.N.1    Poyser, S.J.2    Knox, M.R.3    Vershinin, A.V.4    Ambrose, M.J.5
  • 14
    • 0020793569 scopus 로고
    • A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity
    • Feinberg AP, Vogelstein B (1983) A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6-13
    • (1983) Anal Biochem , vol.132 , pp. 6-13
    • Feinberg, A.P.1    Vogelstein, B.2
  • 15
    • 0027034206 scopus 로고
    • Ty1-copia group retrotransposons and the evolution of retroelements in the eukaryotes
    • Flavell AJ (1992) Ty1 -copia group retrotransposons and the evolution of retroelements in the eukaryotes. Genetica 86:203-214
    • (1992) Genetica , vol.86 , pp. 203-214
    • Flavell, A.J.1
  • 16
    • 0026516955 scopus 로고
    • Extreme heterogeneity of Ty1-copia group retrotransposons in plants
    • Flavell AJ, Smith DB, Kumar A (1992) Extreme heterogeneity of Ty1-copia group retrotransposons in plants. Mol Gen Genet 231:233-242
    • (1992) Mol Gen Genet , vol.231 , pp. 233-242
    • Flavell, A.J.1    Smith, D.B.2    Kumar, A.3
  • 17
    • 0029819321 scopus 로고    scopus 로고
    • Replication infidelity during a single cycle of Ty1 retrotransposition
    • Gabriel A, Willems M, Mules EH, Boeke JD (1996) Replication infidelity during a single cycle of Ty1 retrotransposition. Proc Natl Acad Sci USA 93: 7767-7771
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 7767-7771
    • Gabriel, A.1    Willems, M.2    Mules, E.H.3    Boeke, J.D.4
  • 18
    • 0000270504 scopus 로고
    • Nuclear RNA splicing and small nuclear RNAs and their genes in higher plants
    • Goodall GJ, Kiss T, Filipowicz W (1991) Nuclear RNA splicing and small nuclear RNAs and their genes in higher plants. Oxford Surv Plant Mol Cell Biol 7:255-296
    • (1991) Oxford Surv Plant Mol Cell Biol , vol.7 , pp. 255-296
    • Goodall, G.J.1    Kiss, T.2    Filipowicz, W.3
  • 19
    • 0024978849 scopus 로고
    • Tnt1: A mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
    • Grandbastien M-A, Spielmann A, Caboche M (1989) Tnt1: a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337:376-380
    • (1989) Nature , vol.337 , pp. 376-380
    • Grandbastien, M.-A.1    Spielmann, A.2    Caboche, M.3
  • 25
    • 0028485954 scopus 로고    scopus 로고
    • Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize
    • Jin Y-K, Bennetzen JL (1996) Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize. Plant Cell 6:1177-1186
    • (1996) Plant Cell , vol.6 , pp. 1177-1186
    • Jin, Y.-K.1    Bennetzen, J.L.2
  • 26
    • 0025666927 scopus 로고
    • Generation of diversity in retroviruses
    • Katz RA, Skalka AM (1990) Generation of diversity in retroviruses. Ann Rev Genet 24:409-445
    • (1990) Ann Rev Genet , vol.24 , pp. 409-445
    • Katz, R.A.1    Skalka, A.M.2
  • 28
    • 0025516495 scopus 로고
    • A copia-like element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis
    • Lee D, Ellis THN, Turner L, Hellens RP, Cleary WG (1990) A copia-like element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis. Plant Mol Biol 15:707-722
    • (1990) Plant Mol Biol , vol.15 , pp. 707-722
    • Lee, D.1    Ellis, T.H.N.2    Turner, L.3    Hellens, R.P.4    Cleary, W.G.5
  • 29
    • 0027651273 scopus 로고
    • BARE-1, a copia-like retroelement in barley (Hordeum vulgare)
    • Manninen I, Schulman AH (1993) BARE-1, a copia-like retroelement in barley (Hordeum vulgare). Plant Mol Biol 22:829-846
    • (1993) Plant Mol Biol , vol.22 , pp. 829-846
    • Manninen, I.1    Schulman, A.H.2
  • 30
    • 0029955972 scopus 로고    scopus 로고
    • Wheat retrotransposon families identified by reverse transcriptase domain analysis
    • Matsuoka Y, Tsunewaki K (1996) Wheat retrotransposon families identified by reverse transcriptase domain analysis. Mol Biol Evol 13:1384-1392
    • (1996) Mol Biol Evol , vol.13 , pp. 1384-1392
    • Matsuoka, Y.1    Tsunewaki, K.2
  • 31
    • 0031793897 scopus 로고    scopus 로고
    • Extreme structural heterogeneity among the members of a maize retrotransposon family
    • Marillonnet S, Wessler SR (1998) Extreme structural heterogeneity among the members of a maize retrotransposon family. Genetics 150:1245-1256
    • (1998) Genetics , vol.150 , pp. 1245-1256
    • Marillonnet, S.1    Wessler, S.R.2
  • 32
    • 0025996907 scopus 로고
    • Evolution of retroposons by acquisition or deletion of retrovirus-like genes
    • McClure MA (1991) Evolution of retroposons by acquisition or deletion of retrovirus-like genes. Mol Biol Evol 8:835-856
    • (1991) Mol Biol Evol , vol.8 , pp. 835-856
    • McClure, M.A.1
  • 33
    • 0026076470 scopus 로고
    • A family of retrotransposons and associated genomic variation in wheat
    • Moore G, Lucas H, Batty N, Flavell R (1991) A family of retrotransposons and associated genomic variation in wheat. Genomics 10:461-468
    • (1991) Genomics , vol.10 , pp. 461-468
    • Moore, G.1    Lucas, H.2    Batty, N.3    Flavell, R.4
  • 34
    • 0027364829 scopus 로고
    • Two subfamilies of MDG1 retrotransposon with different evolutionary histories in D. melanogaster
    • Nurminsky DI (1993) Two subfamilies of MDG1 retrotransposon with different evolutionary histories in D. melanogaster. J Mol Evol 37:496-503
    • (1993) J Mol Evol , vol.37 , pp. 496-503
    • Nurminsky, D.I.1
  • 35
    • 0030456374 scopus 로고    scopus 로고
    • The gag coding region of the Drosophila telomeric retrotransposon HeT-A has an internal frame shift and a length polymorphic regions
    • Pardue M-L, Danilevskaya ON, Lowenhaupt K, Wong J, Erby K (1996) The gag coding region of the Drosophila telomeric retrotransposon HeT-A has an internal frame shift and a length polymorphic regions. J Mol Evol 43:572-583
    • (1996) J Mol Evol , vol.43 , pp. 572-583
    • Pardue, M.-L.1    Danilevskaya, O.N.2    Lowenhaupt, K.3    Wong, J.4    Erby, K.5
  • 36
    • 0028801333 scopus 로고
    • Genetic rearrangements occurring during a single cycle of murine leukemia virus vector replication: Characterization and implications
    • Parthasarathi S, Varela-Echavarria A, Ron Y, Preston BD, Dougherty JP (1995) Genetic rearrangements occurring during a single cycle of murine leukemia virus vector replication: characterization and implications. J Virol 69:7991-8000
    • (1995) J Virol , vol.69 , pp. 7991-8000
    • Parthasarathi, S.1    Varela-Echavarria, A.2    Ron, Y.3    Preston, B.D.4    Dougherty, J.P.5
  • 37
    • 0023931551 scopus 로고
    • DNA sequence analysis of X-ray-induced deletions at the white locus of Drosophila melanogaster
    • Pastink A, Vreeken C, Schalet AP, Eeken JCJ (1988) DNA sequence analysis of X-ray-induced deletions at the white locus of Drosophila melanogaster. Mutation Res 207:23-28
    • (1988) Mutation Res , vol.207 , pp. 23-28
    • Pastink, A.1    Vreeken, C.2    Schalet, A.P.3    Eeken, J.C.J.4
  • 38
    • 0024992893 scopus 로고
    • Broad spectrum of in vivo forward mutations, hypermutations and mutational hotspots in a retroviral shuttle vector after a single replication cycle: Deletions and deletions with insertions
    • Pathak VK, Temin HM (1990) Broad spectrum of in vivo forward mutations, hypermutations and mutational hotspots in a retroviral shuttle vector after a single replication cycle: Deletions and deletions with insertions. Proc Natl Acad Sci USA 87:6024-6028
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 6024-6028
    • Pathak, V.K.1    Temin, H.M.2
  • 39
    • 0029986858 scopus 로고    scopus 로고
    • The Ty1-copia group retrotransposons in Vicia species: Copy number sequence heterogeneity and chromosomal localisation
    • Pearce SR, Harrison G, Li D, Heslop-Harrison JS, Kumar A, Flavell AJ (1996) The Ty1-copia group retrotransposons in Vicia species: copy number sequence heterogeneity and chromosomal localisation. Mol Gen Genet 250:305-315
    • (1996) Mol Gen Genet , vol.250 , pp. 305-315
    • Pearce, S.R.1    Harrison, G.2    Li, D.3    Heslop-Harrison, J.S.4    Kumar, A.5    Flavell, A.J.6
  • 40
    • 0030111477 scopus 로고    scopus 로고
    • DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences
    • Pelissier T, Tutois S, Tourmente S, Deragon JM, Picard G (1996) DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 97:141-151
    • (1996) Genetica , vol.97 , pp. 141-151
    • Pelissier, T.1    Tutois, S.2    Tourmente, S.3    Deragon, J.M.4    Picard, G.5
  • 41
    • 0023375195 scopus 로고
    • The neighbour-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 43
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • Schlotterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucl Acids Res 20:211-215
    • (1992) Nucl Acids Res , vol.20 , pp. 211-215
    • Schlotterer, C.1    Tautz, D.2
  • 44
    • 0031438822 scopus 로고    scopus 로고
    • BARE-ID, a representative of a family of BARE-like elements of the barley genome
    • Shcherban' AB, Vershinin AV (1997) BARE-ID, a representative of a family of BARE-like elements of the barley genome. Genetica 100:231-240
    • (1997) Genetica , vol.100 , pp. 231-240
    • Shcherban', A.B.1    Vershinin, A.V.2
  • 45
    • 0027074470 scopus 로고
    • A mechanism for deletion formation in DNA by human cell extracts: The involvement of short sequence repeats
    • Thacker J, Chalk J, Ganesh A, North P (1992) A mechanism for deletion formation in DNA by human cell extracts: the involvement of short sequence repeats. Nucleic Acids Res 20:6183-6188
    • (1992) Nucleic Acids Res , vol.20 , pp. 6183-6188
    • Thacker, J.1    Chalk, J.2    Ganesh, A.3    North, P.4
  • 47
    • 0021807061 scopus 로고
    • Evolutionary variants of Rous sarcoma virus: Large deletion mutants do not result from homologous recombination
    • Voynow S, Coffin JM (1985) Evolutionary variants of Rous sarcoma virus: large deletion mutants do not result from homologous recombination. J Virol 55:67-78
    • (1985) J Virol , vol.55 , pp. 67-78
    • Voynow, S.1    Coffin, J.M.2
  • 49
    • 0031127313 scopus 로고    scopus 로고
    • Copia-like retrotransposons in rice: Sequence heterogeneity species distribution and chromosomal locations
    • Wang S, Zhang Q, Mauughan PJ, Saghai Maroof MA (1997) Copia-like retrotransposons in rice: sequence heterogeneity species distribution and chromosomal locations. Plant Mol Biol 33:1051-1058
    • (1997) Plant Mol Biol , vol.33 , pp. 1051-1058
    • Wang, S.1    Zhang, Q.2    Mauughan, P.J.3    Saghai Maroof, M.A.4
  • 50
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)
    • Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Tomas BBT, Powell W (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687-694
    • (1997) Mol Gen Genet , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Tomas, B.B.T.6    Powell, W.7
  • 52
    • 0028053733 scopus 로고
    • Retrotransposons in the flanking regions of normal plant genes: A role of copia-like elements in the evolution of gene structure and expression
    • White SE, Habera LF, Wessler SR (1994) Retrotransposons in the flanking regions of normal plant genes: a role of copia-like elements in the evolution of gene structure and expression. Proc Natl Acad Sci USA 91:11792-11796
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11792-11796
    • White, S.E.1    Habera, L.F.2    Wessler, S.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.