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Volumn 48, Issue 1, 2005, Pages 96-105

Genome constitution and classification using retrotransposon-based markers in the orphan crop banana

Author keywords

Genome constitution; Inter Retrotransposon Amplified Polymorphism; Long terminal repeat; Musa; Phylogenetic analysis; Retrotransposon

Indexed keywords

MUSA; MUSA ACUMINATA; MUSA BALBISIANA;

EID: 20744449042     PISSN: 12269239     EISSN: None     Source Type: Journal    
DOI: 10.1007/bf03030568     Document Type: Article
Times cited : (80)

References (28)
  • 1
    • 0036667682 scopus 로고    scopus 로고
    • Inter-retrotransposon amplified polymorphism (IRAP), and retotransposon-microsatellite amplified polymorphism (REMAP) in populations of the young allopolyploid species Spartina angelica Hubbard (Poaceae)
    • Baumel A, Ainouche M, Kalendar R, Schulman AH (2002) Inter- retrotransposon amplified polymorphism (IRAP), and retotransposon-microsatellite amplified polymorphism (REMAP) in populations of the young allopolyploid species Spartina angelica Hubbard (Poaceae). Mol Biol Evol 19: 1218-1227
    • (2002) Mol Biol Evol , vol.19 , pp. 1218-1227
    • Baumel, A.1    Ainouche, M.2    Kalendar, R.3    Schulman, A.H.4
  • 2
    • 0036010790 scopus 로고    scopus 로고
    • Combined mapping of Aegilops tauschii by retrotransposon, microsatellite, and gene markers
    • Boyko E, Kalendar R, Korzun V, Gill B, Schulman AH (2002) Combined mapping of Aegilops tauschii by retrotransposon, microsatellite, and gene markers. Plant Mol Biol 48: 767-790
    • (2002) Plant Mol Biol , vol.48 , pp. 767-790
    • Boyko, E.1    Kalendar, R.2    Korzun, V.3    Gill, B.4    Schulman, A.H.5
  • 4
    • 0032409406 scopus 로고    scopus 로고
    • Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis
    • Flavell AJ, Knox MR, Pearce SR, Ellis THN (1998) Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J 16: 643-650
    • (1998) Plant J , vol.16 , pp. 643-650
    • Flavell, A.J.1    Knox, M.R.2    Pearce, S.R.3    Ellis, T.H.N.4
  • 5
    • 0024978849 scopus 로고
    • Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
    • Grandbastien M-A, Spielmann A, Caboche M (1989) Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337: 376-380
    • (1989) Nature , vol.337 , pp. 376-380
    • Grandbastien, M.-A.1    Spielmann, A.2    Caboche, M.3
  • 6
    • 0027168422 scopus 로고
    • Activation of tobacco retrotransposons during tissue culture
    • Hirochika H (1993) Activation of tobacco retrotransposons during tissue culture. EMBO J 12: 2521-2528
    • (1993) EMBO J , vol.12 , pp. 2521-2528
    • Hirochika, H.1
  • 8
    • 3242792949 scopus 로고    scopus 로고
    • Banana and plantain
    • D Fuccillo, L Sears, P Stapleton, eds, Conservation and Use of Plant Genetic Resources in CGIAR Centres, Cambridge University, London
    • Horry JP, Ortiz R, Arnaud E, Crouch JH, Ferris RSB, Jones DR, Mateo N, Picq C, Vuylsteke (1997) Banana and plantain. In D Fuccillo, L Sears, P Stapleton, eds, Biodiversity in Trust. (Conservation and Use of Plant Genetic Resources in CGIAR Centres), Cambridge University, London, pp 67-81
    • (1997) Biodiversity in Trust , pp. 67-81
    • Horry, J.P.1    Ortiz, R.2    Arnaud, E.3    Crouch, J.H.4    Ferris, R.S.B.5    Jones, D.R.6    Mateo, N.7    Picq, C.8    Vuylsteke9
  • 9
    • 0033059511 scopus 로고    scopus 로고
    • p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species
    • Iwamoto M, Nagashima H, Nagamine T, Higo T, Higo K (1999) p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species. Theor Appl Genet 98: 853-861
    • (1999) Theor Appl Genet , vol.98 , pp. 853-861
    • Iwamoto, M.1    Nagashima, H.2    Nagamine, T.3    Higo, T.4    Higo, K.5
  • 10
  • 11
    • 0034612315 scopus 로고    scopus 로고
    • Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
    • Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH (2000) Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci USA 97: 6603-6607
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6603-6607
    • Kalendar, R.1    Tanskanen, J.2    Immonen, S.3    Nevo, E.4    Schulman, A.H.5
  • 12
  • 13
    • 0033764322 scopus 로고    scopus 로고
    • Application of BARE-1 retrotransposon markers to the mapping of a major resistance gene for net blotch in barley
    • Manninen O, Kalendar R, Robinson J, Schulman AH (2000) Application of BARE-1 retrotransposon markers to the mapping of a major resistance gene for net blotch in barley. Mol Gen Genet 264: 325-334
    • (2000) Mol Gen Genet , vol.264 , pp. 325-334
    • Manninen, O.1    Kalendar, R.2    Robinson, J.3    Schulman, A.H.4
  • 14
    • 0035869113 scopus 로고    scopus 로고
    • Methylation is not the main force repressing the retrotransposon MAGGY in Magnaporthe grisea
    • Nakayashiki H, Ikeda K, Hashimota Y, Tosa Y, Mayama S (2001) Methylation is not the main force repressing the retrotransposon MAGGY in Magnaporthe grisea. Nucl Acids Res 29: 1278-1284
    • (2001) Nucl Acids Res , vol.29 , pp. 1278-1284
    • Nakayashiki, H.1    Ikeda, K.2    Hashimota, Y.3    Tosa, Y.4    Mayama, S.5
  • 15
    • 0029986858 scopus 로고    scopus 로고
    • The Ty1-copia group of retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localisation
    • Pearce SR, Harrison G, Li D, Heslop-Harrison JS, Kumar A, Flavell AJ (1996) The Ty1-copia group of retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localisation. Mol Gen Genet 205: 305-315
    • (1996) Mol Gen Genet , vol.205 , pp. 305-315
    • Pearce, S.R.1    Harrison, G.2    Li, D.3    Heslop-Harrison, J.S.4    Kumar, A.5    Flavell, A.J.6
  • 16
    • 0033799423 scopus 로고    scopus 로고
    • Pea Ty1-copia group retrotransposons: Transpositional activity and use as markers to study genetic diversity in Pisum
    • Pearce SR, Knox M, Ellis THN, Flavell AJ, Kumar A (2000) Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum. Mol Gen Genet 263: 898-907
    • (2000) Mol Gen Genet , vol.263 , pp. 898-907
    • Pearce, S.R.1    Knox, M.2    Ellis, T.H.N.3    Flavell, A.J.4    Kumar, A.5
  • 17
    • 0033197649 scopus 로고    scopus 로고
    • Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies
    • Pearce SR, Stuart-Rogers C, Knox MR, Kumar A, Ellis THN, Flavell AJ (1999) Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. Plant J 19: 711-717
    • (1999) Plant J , vol.19 , pp. 711-717
    • Pearce, S.R.1    Stuart-Rogers, C.2    Knox, M.R.3    Kumar, A.4    Ellis, T.H.N.5    Flavell, A.J.6
  • 18
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 21
    • 0033852426 scopus 로고    scopus 로고
    • A contiguous 66 kb barley DNA sequence provides evidence for reversible genome expansion
    • Shirasu K, Schulman AH, Lahaye T, Schulze-Lefert P (2000) A contiguous 66 kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res 10: 908-915
    • (2000) Genome Res , vol.10 , pp. 908-915
    • Shirasu, K.1    Schulman, A.H.2    Lahaye, T.3    Schulze-Lefert, P.4
  • 23
    • 0032734357 scopus 로고    scopus 로고
    • Sine insertions as clade markers for wild Crucifer species
    • Tatout C, Warwick S, Lenoir A, Deragon JM (1999) Sine insertions as clade markers for wild Crucifer species. Mol Biol Evol 16: 1614-1621
    • (1999) Mol Biol Evol , vol.16 , pp. 1614-1621
    • Tatout, C.1    Warwick, S.2    Lenoir, A.3    Deragon, J.M.4
  • 24
    • 0036623108 scopus 로고    scopus 로고
    • The cloning of Ty1-copia-like retrotransposons from 10 varieties of banana (Musa sp.)
    • Teo CH, Tan SH, Othman YR, Schwarzacher T (2002) The cloning of Ty1-copia-like retrotransposons from 10 varieties of banana (Musa sp.). J Biochem Mol Biol Biophys 6: 193-201
    • (2002) J Biochem Mol Biol Biophys , vol.6 , pp. 193-201
    • Teo, C.H.1    Tan, S.H.2    Othman, Y.R.3    Schwarzacher, T.4
  • 26
    • 0012924875 scopus 로고    scopus 로고
    • Copia-like retrotransposons in the rice genome: Few and assorted
    • Vicient CM, Schulman AH (2002) Copia-like retrotransposons in the rice genome: few and assorted. Genome Lett 1: 35-47
    • (2002) Genome Lett , vol.1 , pp. 35-47
    • Vicient, C.M.1    Schulman, A.H.2
  • 28
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of BARE-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)
    • Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BBT, Powell W (1997) Genetic distribution of BARE-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253: 687-694
    • (1997) Mol Gen Genet , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.B.T.6    Powell, W.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.