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Volumn 1, Issue JAN, 2011, Pages

Defining pathogenic bacterial species in the genomic era

Author keywords

Allopatry; Evolution; Gene loss; Pathogens; Speciation; Sympatry

Indexed keywords


EID: 79952797542     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2010.00151     Document Type: Review
Times cited : (64)

References (120)
  • 1
    • 84875330189 scopus 로고    scopus 로고
    • Paris: Chez Vincent, Imprimeur-Libraire de Mgr de Comte de Provence.
    • Adanson, M. (1763). Familles Naturelles des Plantes, Vol. 2. Paris: Chez Vincent, Imprimeur-Libraire de Mgr de Comte de Provence.
    • Familles Naturelles des Plantes , vol.2
    • Adanson, M.1
  • 4
    • 0032127258 scopus 로고    scopus 로고
    • Reductive evolution of resident genomes
    • Andersson, S. G. E., and Kurland, C. G. (1998). Reductive evolution of resident genomes. Trends Microbiol. 6, 263-268.
    • (1998) Trends Microbiol , vol.6 , pp. 263-268
    • Andersson, S.G.E.1    Kurland, C.G.2
  • 5
    • 34548415876 scopus 로고    scopus 로고
    • Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria
    • doi:10.1371/journal.pgen.0030138
    • Audic, S., Robert, C., Campagna, B., Parinello, H., Claverie, J. M., Raoult, D., and Drancourt, M. (2007). Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria. PLoS Genet. 3, e138. doi: 10.1371/ journal.pgen.0030138
    • (2007) PLoS Genet , vol.3
    • Audic, S.1    Robert, C.2    Campagna, B.3    Parinello, H.4    Claverie, J.M.5    Raoult, D.6    Drancourt, M.7
  • 6
    • 49749146681 scopus 로고    scopus 로고
    • RickA expression is not sufficient to promote actin-based motility of Rickettsia raoultii
    • doi:10.1371/journal.pone.0002582
    • Balraj, P., Karkouri, K. E., Vestris, G., Espinosa, L., Raoult, D., and Renesto, P. (2008). RickA expression is not sufficient to promote actin-based motility of Rickettsia raoultii. PLoS ONE 3, e2582. doi: 10.1371/journal. pone.0002582
    • (2008) PLoS ONE , vol.3
    • Balraj, P.1    Karkouri, K.E.2    Vestris, G.3    Espinosa, L.4    Raoult, D.5    Renesto, P.6
  • 8
    • 77951796787 scopus 로고    scopus 로고
    • Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities
    • Bechah, Y., Karkouri, K. E., Mediannikov, O., Leroy, Q., Pelletier, N., Robert, C. Medigue, C., Mege, J. L., and Raoult, D. (2010). Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities. Genome Res. 20, 655-663.
    • (2010) Genome Res , vol.20 , pp. 655-663
    • Bechah, Y.1    Karkouri, K.E.2    Mediannikov, O.3    Leroy, Q.4    Pelletier, N.5    Robert, C.6    Medigue, C.7    Mege, J.L.8    Raoult, D.9
  • 9
    • 63049138461 scopus 로고    scopus 로고
    • Sequencing the species pangenome
    • Bentley, S. (2009). Sequencing the species pangenome. Nat. Rev. Microbiol. 7, 258-259.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 258-259
    • Bentley, S.1
  • 10
    • 59849096566 scopus 로고    scopus 로고
    • The red queen and the court jester: species diversity and the role of biotic and abiotic factors through time
    • Benton, M. J. (2009). The red queen and the court jester: species diversity and the role of biotic and abiotic factors through time. Science 323, 728-732.
    • (2009) Science , vol.323 , pp. 728-732
    • Benton, M.J.1
  • 12
    • 78649934045 scopus 로고    scopus 로고
    • Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4th domain of life including giant viruses
    • doi: 10.1371/journal.pone.0015530
    • Boyer, M., Madoui, M. A., Gimenez, G., La Scola, B., and Raoult, D. (2010). Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4th domain of life including giant viruses. PLoS ONE 5, e15530. doi: 10.1371/journal.pone.0015530
    • (2010) PLoS ONE , vol.5
    • Boyer, M.1    Madoui, M.A.2    Gimenez, G.3    La Scola, B.4    Raoult, D.5
  • 14
    • 0037373563 scopus 로고    scopus 로고
    • The modern molecular clock
    • Bromham, L., and Penny, D. (2003). The modern molecular clock. Nat. Rev. Genet. 4, 216-224.
    • (2003) Nat. Rev. Genet , vol.4 , pp. 216-224
    • Bromham, L.1    Penny, D.2
  • 15
    • 84857515056 scopus 로고    scopus 로고
    • Hypervirulent Mycobacterium tuberculosis
    • Casali, N. (2003). Hypervirulent Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. U.S.A. 26, 15918-15923.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.26 , pp. 15918-15923
    • Casali, N.1
  • 16
    • 0036208071 scopus 로고    scopus 로고
    • The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa
    • Cavalier-Smith, T. (2002). The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa. Int. J. Syst. Evol. Microbiol. 52, 297-354.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 297-354
    • Cavalier-Smith, T.1
  • 18
    • 33745624539 scopus 로고    scopus 로고
    • The rate of adaptive evolution in enteric bacteria
    • Charlesworth, J., and Eyre-Walker, A. (2006). The rate of adaptive evolution in enteric bacteria. Mol. Biol. Evol. 23, 1348-1356.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 1348-1356
    • Charlesworth, J.1    Eyre-Walker, A.2
  • 19
    • 2942540388 scopus 로고
    • Pansporella perplexa Réflexions sur la biologie et la phylogénie de protozoaires. 10e serie
    • Chatton, E. (1925). Pansporella perplexa. Réflexions sur la biologie et la phylogénie de protozoaires. 10e serie. Ann. Sci. Nat. Zool. 7, 1-84.
    • (1925) Ann. Sci. Nat. Zool. , vol.7 , pp. 1-84
    • Chatton, E.1
  • 22
    • 0036874116 scopus 로고    scopus 로고
    • Sexual isolation and speciation in bacteria
    • Cohan, F. M. (2002). Sexual isolation and speciation in bacteria. Genetica 116, 359-370.
    • (2002) Genetica , vol.116 , pp. 359-370
    • Cohan, F.M.1
  • 23
    • 0036775772 scopus 로고    scopus 로고
    • Comparative and functional genomics of the Mycobacterium tuberculosis complex
    • Cole, S. T. (2002). Comparative and functional genomics of the Mycobacterium tuberculosis complex. Microbiology 148, 2919-2928.
    • (2002) Microbiology , vol.148 , pp. 2919-2928
    • Cole, S.T.1
  • 26
    • 34848903282 scopus 로고    scopus 로고
    • Intracellular pathogens go extreme: genome evolution in the Rickettsiales
    • Darby, A. C., Cho, N. H., Fuxelius, H. H., Westberg, J., and Andersson, S. G. E. (2007). Intracellular pathogens go extreme: genome evolution in the Rickettsiales. Trends Genet. 23, 511-520.
    • (2007) Trends Genet , vol.23 , pp. 511-520
    • Darby, A.C.1    Cho, N.H.2    Fuxelius, H.H.3    Westberg, J.4    Andersson, S.G.E.5
  • 28
    • 57649174709 scopus 로고    scopus 로고
    • Buruli ulcer: reductive evolution enhances pathogenicity of Mycobacterium ulcerans
    • Demangel, C., Stinear, T. P., and Cole, S. T. (2009). Buruli ulcer: reductive evolution enhances pathogenicity of Mycobacterium ulcerans. Nat. Rev. Microbiol. 7, 50-60.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 50-60
    • Stinear, T.P.1    Cole, S.T.2
  • 29
    • 2442449227 scopus 로고    scopus 로고
    • Genomic islands in pathogenic and environmental microorganisms
    • Dobrindt, U., Hochhut, B., Hentschel U., and Hacker, J. (2004). Genomic islands in pathogenic and environmental microorganisms. Nat. Rev. Microbiol. 2, 414-424.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 414-424
    • Dobrindt, U.1    Hochhut, B.2    Hentschel, U.3    Hacker, J.4
  • 30
    • 33847790997 scopus 로고    scopus 로고
    • Pattern pluralism and the tree of life hypothesis
    • Doolittle, W. F., and Bapteste, E. (2007). Pattern pluralism and the tree of life hypothesis. Proc. Natl. Acad. Sci. U.S.A. 104, 2043-2049.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 2043-2049
    • Doolittle, W.F.1    Bapteste, E.2
  • 31
    • 33845890829 scopus 로고    scopus 로고
    • Genomics and the bacterial species problem
    • Doolittle, W. F., and Papke, R. T. (2006). Genomics and the bacterial species problem. Genome Biol. 7, 116-123.
    • (2006) Genome Biol , vol.7 , pp. 116-123
    • Doolittle, W.F.1    Papke, R.T.2
  • 32
    • 2442526655 scopus 로고    scopus 로고
    • Systematic 16S rRNA gene sequencing of atypical clinical isolates identified 27 new bacterial species associated with humans
    • Drancourt, M., Berger, P., and Raoult, D. (2004). Systematic 16S rRNA gene sequencing of atypical clinical isolates identified 27 new bacterial species associated with humans. J. Clin. Microbiol. 42, 2197-2202.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 2197-2202
    • Drancourt, M.1    Berger, P.2    Raoult, D.3
  • 33
    • 0002224909 scopus 로고
    • "Punctuated equilibria: an alternative to phyletic gradualism," in Models in Paleobiology, ed. T. J. M. Schopf (San Francisco: Freeman
    • Eldredge, N., and Gould, S. J. (1972). "Punctuated equilibria: an alternative to phyletic gradualism," in Models in Paleobiology, ed. T. J. M. Schopf (San Francisco: Freeman, Cooper and Company), 82-115.
    • (1972) Cooper and Company) , pp. 82-115
    • Eldredge, N.1    Gould, S.J.2
  • 34
    • 0030007094 scopus 로고    scopus 로고
    • Large scale search for genes on which positive selection may operate
    • Endo, T., Ikeo, K., and Gojobori, T. (1996). Large scale search for genes on which positive selection may operate. Mol. Biol. Evol. 13, 685-690.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 685-690
    • Endo, T.1    Ikeo, K.2    Gojobori, T.3
  • 36
    • 79952777459 scopus 로고    scopus 로고
    • "Linkage, selection, and the clonal complex,"
    • eds D. A. Robinson, D. Falush, and J. E. Feil (Hoboken, NJ: John Wiley and Sons, Inc.)
    • Feil, J. E. (2010). "Linkage, selection, and the clonal complex," in Bacterial Population Genetics in Infectious Disease, eds D. A. Robinson, D. Falush, and J. E. Feil (Hoboken, NJ: John Wiley and Sons, Inc.), 19-35.
    • (2010) Bacterial Population Genetics in Infectious Disease , pp. 19-35
    • Feil, J.E.1
  • 37
    • 0030696044 scopus 로고    scopus 로고
    • Determining divergence times with a protein clock: update and reevaluation
    • Feng, D. F., Cho, G., and Doolittle, R. F. (1997). Determining divergence times with a protein clock: update and reevaluation. Proc. Natl. Acad. Sci. U.S.A. 94, 13028-13033.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 13028-13033
    • Feng, D.F.1    Cho, G.2    Doolittle, R.F.3
  • 39
    • 67649111863 scopus 로고    scopus 로고
    • Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction
    • doi: 10.1186/1471-2164-10-166
    • Fournier, P. E., Karkouri, K. E., Leroy, Q., Robert, C., Giumelli, B., Renesto, P., Socolovschi, C., Parola, P., Audic, S., and Raoult, D. (2009). Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction. BMC Genomics 10, 166-180. doi: 10.1186/1471-2164-10-166
    • (2009) BMC Genomics , vol.10 , pp. 166-180
    • Fournier, P.E.1    Karkouri, K.E.2    Leroy, Q.3    Robert, C.4    Giumelli, B.5    Renesto, P.6    Socolovschi, C.7    Parola, P.8    Audic, S.9    Raoult, D.10
  • 41
    • 0026585263 scopus 로고
    • How close is close - 16S ribosomal-RNA sequence identity may not be sufficient to guarantee species identity
    • Fox, G. E., Wisotzkey, J. D., and Jurtshuk, P. (1992). How close is close - 16S ribosomal-RNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170.
    • (1992) J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 42
    • 0034680168 scopus 로고    scopus 로고
    • Microbial genome sequencing
    • Fraser, C. M., Eisen, J. A., and Salzberg, S. L. (2000). Microbial genome sequencing. Nature 406, 799-803.
    • (2000) Nature , vol.406 , pp. 799-803
    • Fraser, C.M.1    Eisen, J.A.2    Salzberg, S.L.3
  • 43
    • 0034049514 scopus 로고    scopus 로고
    • The consequences of growth of a mutator strain of Escherichia coli as measured by loss of function among multiple gene targets and loss of fitness
    • Funchain, P., Yeung, A., Steward, J. L., Lin, R., Slupska, M. M., and Miller, L. H. (2000). The consequences of growth of a mutator strain of Escherichia coli as measured by loss of function among multiple gene targets and loss of fitness. Genetics 154, 959-970.
    • (2000) Genetics , vol.154 , pp. 959-970
    • Funchain, P.1    Yeung, A.2    Steward, J.L.3    Lin, R.4    Slupska, M.M.5    Miller, L.H.6
  • 44
    • 31344459549 scopus 로고    scopus 로고
    • Antimicrobial-resistant bacteria in the community setting
    • Furuya, E. Y., and Lowy, F. D. (2006). Antimicrobial-resistant bacteria in the community setting. Nat. Rev. Microbiol. 4, 36-45.
    • Nat. Rev. Microbiol. , vol.4 , pp. 36-45
    • Furuya, E.Y.1    Lowy, F.D.2
  • 45
    • 33846563954 scopus 로고    scopus 로고
    • Quantification by fluorescent in situ hybridization of bacteria associated with Litopenaeus vannamei larvae in Mexican shrimp hatchery
    • Garcia, A. T., and Olmos, J. S. (2007). Quantification by fluorescent in situ hybridization of bacteria associated with Litopenaeus vannamei larvae in Mexican shrimp hatchery. Aquaculture 262, 211-218.
    • (2007) Aquaculture , vol.262 , pp. 211-218
    • Garcia, A.T.1    Olmos, J.S.2
  • 46
    • 48949116775 scopus 로고    scopus 로고
    • Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life
    • doi: 10.1371/journal.pone.0002018
    • Gillespie, J. J., William, K., and Shukla, M. (2008). Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life. PLoS ONE 3, e2018. doi: 10.1371/journal.pone.0002018
    • (2008) PLoS ONE , vol.3
    • Gillespie, J.J.1    William, K.2    Shukla, M.3
  • 47
    • 0029056825 scopus 로고
    • Shigella flexneri surface protein Icsa is sufficient to direct actin-based motility
    • Goldberg, M. B., and Theriot, J. A. (1995). Shigella flexneri surface protein Icsa is sufficient to direct actin-based motility. Proc. Natl. Acad. Sci. U.S.A. 92, 6572-6576.
    • (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 6572-6576
    • Goldberg, M.B.1    Theriot, J.A.2
  • 49
    • 0028107305 scopus 로고
    • Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over 4 continents and 41 years
    • Karaolis, D. K. R., Lan, R. T., and Reeves, P. R. (1994). Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over 4 continents and 41 years. J. Clin. Microbiol. 32, 796-802.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 796-802
    • Karaolis, D.K.R.1    Lan, R.T.2    Reeves, P.R.3
  • 50
    • 0034074410 scopus 로고    scopus 로고
    • rRNA operon copy number reflects ecological strategies of bacteria
    • Klappenbach, J. A., Dunbar, J. M., and Schmidt, T. M. (2000). rRNA operon copy number reflects ecological strategies of bacteria. Appl. Environ. Microbiol. 66, 1328-1333.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1328-1333
    • Klappenbach, J.A.1    Dunbar, J.M.2    Schmidt, T.M.3
  • 51
    • 77951232931 scopus 로고    scopus 로고
    • Disruption of the Rickettsia rickettsii Sca2 autotransporter inhibits actin based motility
    • Kleba, B., Clark, T. R., Lutter, E. L., Ellison, D. W., and Hackstadt, T. (2010). Disruption of the Rickettsia rickettsii Sca2 autotransporter inhibits actin based motility. Infect. Immun. 78, 2240-2247.
    • (2010) Infect. Immun. , vol.78 , pp. 2240-2247
    • Kleba, B.1    Clark, T.R.2    Lutter, E.L.3    Ellison, D.W.4    Hackstadt, T.5
  • 52
    • 62549132572 scopus 로고    scopus 로고
    • Darwinian evolution in the light of genomics
    • Koonin, E. V. (2009). Darwinian evolution in the light of genomics. Nucleic Acids Res. 37, 1011-1034.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1011-1034
    • Koonin, E.V.1
  • 53
    • 0030031267 scopus 로고    scopus 로고
    • Gene transfer is a major factor in bacterial evolution
    • Lan, R., and Reeves, P. R. (1996). Gene transfer is a major factor in bacterial evolution. Mol. Biol. Evol. 13, 47-55.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 47-55
    • Lan, R.1    Reeves, P.R.2
  • 54
    • 61349194462 scopus 로고    scopus 로고
    • Estimating the size of the bacterial pangenome
    • Lapierre, P., and Gogarten, J. P. (2009). Estimating the size of the bacterial pangenome. Trends Genet. 25, 107-110.
    • (2009) Trends Genet , vol.25 , pp. 107-110
    • Lapierre, P.1    Gogarten, J.P.2
  • 55
    • 0036598066 scopus 로고    scopus 로고
    • Gene transfer in bacteria: speciation without species? Theor
    • Lawrence, J. (2002). Gene transfer in bacteria: speciation without species? Theor. Popul. Biol. 61, 449-460.
    • (2002) Popul. Biol. , vol.61 , pp. 449-460
    • Lawrence, J.1
  • 56
    • 0032855518 scopus 로고    scopus 로고
    • Gene transfer, speciation and the evolution of bacterial genomes
    • Lawrence, J. G. (1999). Gene transfer, speciation and the evolution of bacterial genomes. Curr. Opin. Microbiol. 2, 519-523.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 519-523
    • Lawrence, J.G.1
  • 57
    • 0024213199 scopus 로고
    • Comment designer les serotypes de Salmonella? Méd
    • Le Minor, L. (1988). Comment designer les serotypes de Salmonella? Méd. Mal. Infect. 12, 859-862.
    • (1988) Mal. Infect. , vol.12 , pp. 859-862
    • Le Minor, L.1
  • 58
    • 34548846699 scopus 로고    scopus 로고
    • Evolution of the core and pangenome of Streptococcus: positive selection, recombination, and genome composition
    • Lefebure, T., and Stanhope, M. J. (2007). Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biol. 8, R71.
    • (2007) Genome Biol , vol.8
    • Lefebure, T.1    Stanhope, M.J.2
  • 59
    • 52949138281 scopus 로고    scopus 로고
    • The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tickborn Borrelia duttonii
    • doi: 10.1371/journal. pgen.1000185
    • Lescot, M., Audic, S., Robert, C., Nguyen, T. T., Blanc, G., Cutler, S. J., Wincker, P., Couloux, A., Claverie, J.-M., Raoult, D., and Drancourt, M. (2008). The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tickborn Borrelia duttonii. PLoS Genet. 4, e1000185. doi: 10.1371/journal. pgen.1000185
    • (2008) PLoS Genet , vol.4
    • Lescot, M.1    Audic, S.2    Robert, C.3    Nguyen, T.T.4    Blanc, G.5    Cutler, S.J.6    Wincker, P.7    Couloux, A.8    Claverie, J.-M.9    Raoult, D.10    Drancourt, M.11
  • 61
    • 42549108748 scopus 로고    scopus 로고
    • Acinetobacter baumannii: Epidemiology antimicrobial resistance, and treatment options
    • Maragakis, L. L., and Perl, T. M. (2008). Acinetobacter baumannii: Epidemiology antimicrobial resistance, and treatment options. Clin. Infect. Dis. 46, 1254-1263.
    • (2008) Clin. Infect. Dis. , vol.46 , pp. 1254-1263
    • Maragakis, L.L.1    Perl, T.M.2
  • 62
    • 48549097151 scopus 로고    scopus 로고
    • Metagenomics and the niche concept
    • Marco, D. (2008). Metagenomics and the niche concept. Theory Biosci. 127, 241-247.
    • (2008) Theory Biosci , vol.127 , pp. 241-247
    • Marco, D.1
  • 63
    • 0032584169 scopus 로고    scopus 로고
    • Black holes and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli
    • Maurelli, A. T., Fernandez, R. E., Bloch, C. A., Rode, C. K., and Fasano, A. (1998). Black holes and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 95, 3943-3948.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 3943-3948
    • Maurelli, A.T.1    Fernandez, R.E.2    Bloch, C.A.3    Rode, C.K.4    Fasano, A.5
  • 64
    • 84929870161 scopus 로고
    • Washington, DC: American Association for the Advancement of Science
    • Mayr, E. (1957). The Species Problem. Washington, DC: American Association for the Advancement of Science.
    • (1957) The Species Problem.
    • Mayr, E.1
  • 66
    • 79954532607 scopus 로고    scopus 로고
    • Rickettsial evolution in the light of comparative genomics
    • doi: 10.1111/j.1469-185X.2010.00151.x. [Epub ahead of print]
    • Merhej, V., and Raoult, D. (2010). Rickettsial evolution in the light of comparative genomics. Biol. Rev. doi: 10.1111/j.1469-185X.2010.00151.x. [Epub ahead of print].
    • (2010) Biol. Rev.
    • Merhej, V.1    Raoult, D.2
  • 67
    • 66749136930 scopus 로고    scopus 로고
    • Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
    • Merhej, V., Royer-Carenzi, M., Pontarotti, P., and Raoult, D. (2009). Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol. Direct 4, 13.
    • (2009) Biol. Direct , vol.4 , pp. 13
    • Merhej, V.1    Royer-Carenzi, M.2    Pontarotti, P.3    Raoult, D.4
  • 68
    • 77950421915 scopus 로고    scopus 로고
    • Genome analysis of microorganisms living in amoeba reveals a melting pot of evolution
    • Moliner, C., Fournier, P. E., and Raoult, D. (2010). Genome analysis of microorganisms living in amoeba reveals a melting pot of evolution. FEMS Microbiol. Rev. 34, 281-294.
    • (2010) FEMS Microbiol. Rev. , vol.34 , pp. 281-294
    • Moliner, C.1    Fournier, P.E.2    Raoult, D.3
  • 70
    • 0037040394 scopus 로고    scopus 로고
    • Microbial minimalism: genome reduction in bacterial pathogens
    • Moran, N. A. (2002). Microbial minimalism: genome reduction in bacterial pathogens. Cell 108, 583-586.
    • (2002) Cell , vol.108 , pp. 583-586
    • Moran, N.A.1
  • 71
    • 0035749612 scopus 로고    scopus 로고
    • The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
    • research0054 1-research0054
    • Moran, N. A., and Mira, A. (2001). The process of genome shrinkage in the obligate symbiont Buchnera aphidicola. Genome Biol. 2, research0054.1-research0054.12.
    • (2001) Genome Biol , vol.2 , pp. 12
    • Moran, N.A.1    Mira, A.2
  • 72
    • 0034255952 scopus 로고    scopus 로고
    • Lifestyle evolution in symbiotic bacteria
    • Moran, N. A., and Wernegreen, J. J. (2000). Lifestyle evolution in symbiotic bacteria: insights from genomics. Trends Ecol. Evol. 15, 321-326.
    • (2000) Ecol. Evol. , vol.15
    • Moran, N.A.1    Wernegreen, J.J.2
  • 73
    • 0346340083 scopus 로고    scopus 로고
    • The in vitro evolution of BCG vaccines
    • Mostowy, S., Tsolaki, A. G., Small, P. M., and Behr, M. A. (2003). The in vitro evolution of BCG vaccines. Vaccine 21, 4270-4274..
    • (2003) Vaccine , vol.21 , pp. 4270-4274
    • Mostowy, S.1    Tsolaki, A.G.2    Small, P.M.3    Behr, M.A.4
  • 74
    • 0025239739 scopus 로고
    • Intracellular and cell-to cell spread of Listeria monocytogenes involves interaction with F-actin in the enterocyte like cell line Caco-2
    • Mounier, J., Ryter, A., Coquis-Rondon, M., and Sansonetti, P. J. (1990). Intracellular and cell-to cell spread of Listeria monocytogenes involves interaction with F-actin in the enterocyte like cell line Caco-2. Infect. Immun. 58, 1048-1058.
    • (1990) Infect. Immun. , vol.58 , pp. 1048-1058
    • Mounier, J.1    Ryter, A.2    Coquis-Rondon, M.3    Sansonetti, P.J.4
  • 80
    • 18244380086 scopus 로고    scopus 로고
    • Examining bacterial species under the specter of gene transfer and exchange
    • Ochman, H., Lerat, E., and Daubin, V. (2005). Examining bacterial species under the specter of gene transfer and exchange. Proc. Natl. Acad. Sci. U.S.A. 102, 6595-6599.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 6595-6599
    • Ochman, H.1    Lerat, E.2    Daubin, V.3
  • 82
    • 33744982063 scopus 로고    scopus 로고
    • Concept time for a change
    • Pace, N. R. (2006). Concept time for a change. Nature 441, 289.
    • (2006) Nature , vol.441 , pp. 289
    • Pace, N.R.1
  • 84
    • 0037452054 scopus 로고    scopus 로고
    • The cytoskeleton, cellular motility and the reductionist agenda
    • Pollard, T. D. (2003). The cytoskeleton, cellular motility and the reductionist agenda. Nature 422, 741-745.
    • (2003) Nature , vol.422 , pp. 741-745
    • Pollard, T.D.1
  • 85
    • 0034641731 scopus 로고    scopus 로고
    • Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
    • Pupo, G. M., Lan, R. T., and Reeves, P. R. (2000). Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc. Natl. Acad. Sci. U.S.A. 97, 10567-10572
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 10567-10572
    • Pupo, G.M.1    Lan, R.T.2    Reeves, P.R.3
  • 86
    • 73449104745 scopus 로고    scopus 로고
    • The post-Darwinist rhizome of life
    • Raoult, D. (2009). The post-Darwinist rhizome of life. Lancet 375, 104-105..
    • (2009) Lancet , vol.375 , pp. 104-105
    • Raoult, D.1
  • 87
    • 77953708302 scopus 로고    scopus 로고
    • Amoebae as genitors and reservoirs of giant viruses
    • Raoult, D., and Boyer, M. (2010). Amoebae as genitors and reservoirs of giant viruses. Intervirology 53, 321-329
    • (2010) Intervirology , vol.53 , pp. 321-329
    • Raoult, D.1    Boyer, M.2
  • 88
    • 34548695934 scopus 로고    scopus 로고
    • Comparative genomics of mycobacterial proteases
    • Ribeiro-Guimaraes, M. L., and Pessolani, M. C. V. (2007). Comparative genomics of mycobacterial proteases. Microb. Pathog. 43, 173-178..
    • (2007) Microb. Pathog. , vol.43 , pp. 173-178
    • Ribeiro-Guimaraes, M.L.1    Pessolani, M.C.V.2
  • 89
  • 90
    • 2442621393 scopus 로고    scopus 로고
    • Corynebacterium species isolated from bone and joint infection identified by 16 rRNA gene sequence analysis
    • Roux, V., Drancourt, M., Stein, A., Riegel, P., Raoult, D., and La Scola, B. (2004). Corynebacterium species isolated from bone and joint infection identified by 16 rRNA gene sequence analysis. J. Clin. Microbiol. 42, 2231-2233..
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 2231-2233
    • Roux, V.1    Drancourt, M.2    Stein, A.3    Riegel, P.4    Raoult, D.5    La Scola, B.6
  • 92
    • 20544436001 scopus 로고    scopus 로고
    • The prokaryote-eukaryote dichotomy: meanings and mythology
    • Sapp, J. (2005). The prokaryote-eukaryote dichotomy: meanings and mythology. Microbiol. Mol. Biol. Rev. 69, 292-305.
    • (2005) Microbiol. Mol. Biol. Rev. , vol.69 , pp. 292-305
    • Sapp, J.1
  • 93
    • 0021274960 scopus 로고
    • The phylogeny of the hominid primates as indicated by DNA/DNA hybridization
    • Sibley, C. G., and Ahlquist, J. E. (1984). The phylogeny of the hominid primates as indicated by DNA/DNA hybridization. J. Mol. Evol. 20, 1-15.
    • (1984) J. Mol. Evol. , vol.20 , pp. 1-15
    • Sibley, C.G.1    Ahlquist, J.E.2
  • 94
    • 0015842899 scopus 로고
    • Numerical taxonomy of Haemophilus and related bacteria
    • Sneath, P. H. A., and Johnson, R. (1973). Numerical taxonomy of Haemophilus and related bacteria. Int. J. Syst. Bacteriol. 23, 405-418.
    • (1973) Int. J. Syst. Bacteriol. , vol.23 , pp. 405-418
    • Sneath, P.H.A.1    Johnson, R.2
  • 95
    • 77954054691 scopus 로고    scopus 로고
    • The early stage of bacterial genome-reductive evolution in the host
    • doi:10.1371/journal.ppat.1000922
    • Song, H., Hwang, J., Yi, H., Ulrich, R. L., Yu, Y., Nierman, W. C., and Kim, H. S. (2010). The early stage of bacterial genome-reductive evolution in the host. PLoS Pathog. 6, e1000922. doi:10.1371/journal.ppat.1000922
    • (2010) PLoS Pathog , vol.6
    • Song, H.1    Hwang, J.2    Yi, H.3    Ulrich, R.L.4    Yu, Y.5    Nierman, W.C.6    Kim, H.S.7
  • 97
    • 33751258603 scopus 로고    scopus 로고
    • The bacterial species dilemma and the genomic-phylogenetic species concept
    • Staley, J. T. (2006). The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond., B, Biol. Sci. 361, 1899-1909.
    • (2006) Philos. Trans. R. Soc. Lond., B, Biol. Sci. , vol.361 , pp. 1899-1909
    • Staley, J.T.1
  • 102
    • 0024741693 scopus 로고
    • Actin filaments and the growth, movement, and spread of the intracellular bacterial parasite
    • .Tilney, L. G., and Portnoy, D. A. (1989). Actin filaments and the growth, movement, and spread of the intracellular bacterial parasite, Listeria monocytogenes. J. Cell Biol. 109, 1597-1608.
    • (1989) Listeria monocytogenes. J. Cell Biol. , vol.109 , pp. 1597-1608
    • Tilney, L.G.1    Portnoy, D.A.2
  • 104
    • 0002027029 scopus 로고
    • A new evolutionary law
    • Van Vallen, L. M. (1973). A new evolutionary law. Evol. Theory 1, 1-30.
    • (1973) Evol. Theory , vol.1 , pp. 1-30
    • Van Vallen, L.M.1
  • 105
    • 18844397544 scopus 로고    scopus 로고
    • Global divergence of microbial genome sequences mediated by propagating fronts
    • Vetsigian, K., and Goldenfeld, N. (2005). Global divergence of microbial genome sequences mediated by propagating fronts. Proc. Natl. Acad. Sci. U.S.A. 102, 7332-7337
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 7332-7337
    • Vetsigian, K.1    Goldenfeld, N.2
  • 106
    • 67650287704 scopus 로고    scopus 로고
    • Natural selection in action during speciation
    • Via, S. (2009). Natural selection in action during speciation. Proc. Natl. Acad. Sci. U.S.A. 106, 9939-9946..
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 9939-9946
    • Via, S.1
  • 107
    • 46249104728 scopus 로고    scopus 로고
    • A missense mutation causes aspartate deficiency in Yersinia pestis
    • Viola, R. E., Yerman, L., Fowler, J. M., Arvidson, C. G., and Brubaker, R. R. (2008). A missense mutation causes aspartate deficiency in Yersinia pestis. Microbiology 154, 1271-1280.
    • (2008) Microbiology , vol.154 , pp. 1271-1280
    • Viola, R.E.1    Yerman, L.2    Fowler, J.M.3    Arvidson, C.G.4    Brubaker, R.R.5
  • 109
    • 0000770675 scopus 로고
    • Report of the Ad Hoc Committee on reconciliation of approaches to bacterial systematics
    • Wayne, L. G. (1987). Report of the Ad Hoc Committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463-464
    • (1987) Int. J. Syst. Bacteriol. , vol.37 , pp. 463-464
    • Wayne, L.G.1
  • 110
    • 1542347591 scopus 로고    scopus 로고
    • Antibiotic selection pressure and resistance in Streptococcus pneumoniae and Streptococcus pyogenes
    • Werner, C. A., Monnet, L. D., and Harbarth, S. (2004). Antibiotic selection pressure and resistance in Streptococcus pneumoniae and Streptococcus pyogenes. Emerg. Infect. Dis. 10, 514-517..
    • (2004) Emerg. Infect. Dis. , vol.10 , pp. 514-517
    • Werner, C.A.1    Monnet, L.D.2    Harbarth, S.3
  • 111
    • 84875312479 scopus 로고    scopus 로고
    • The modern concept of the prokaryote
    • doi: 10.1128/JB.00962-968. [Epub ahead of print]
    • Whitman, W. B. (2009). The modern concept of the prokaryote. J. Bacteriol. doi: 10.1128/JB.00962-968. [Epub ahead of print].
    • (2009) J. Bacteriol
    • Whitman, W.B.1
  • 113
    • 0035076222 scopus 로고    scopus 로고
    • Reductive evolution in bacteria: Buchnera sp., Rickettsia prowazekii and Mycobacterium leprae
    • Wixon, J. (2001). Reductive evolution in bacteria: Buchnera sp., Rickettsia prowazekii and Mycobacterium leprae. Comp. Funct. Genomics 2, 44-48.
    • (2001) . Comp. Funct. Genomics , vol.2 , pp. 44-48
    • Wixon, J.1
  • 114
    • 0028387348 scopus 로고
    • There must be a prokaryote somewhere - microbiology search for itself
    • Woese, C. R. (1994). There must be a prokaryote somewhere - microbiology search for itself. Microbiol. Rev. 58, 1-9.
    • (1994) Microbiol. Rev. , vol.58 , pp. 1-9
    • Woese, C.R.1
  • 115
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: the primary kingdoms
    • Woese, C. R., and Fox, G. E. (1977). Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. U.S.A. 74, 5088-5090
    • (1977) Proc. Natl. Acad. Sci. U.S.A. , vol.74 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 117
    • 34249089649 scopus 로고    scopus 로고
    • Origins of major human infectious diseases
    • Wolfe, N. D., Dunavan, C. P., and Diamond, J. (2007). Origins of major human infectious diseases. Nature 447, 279-283.
    • (2007) Nature , vol.447 , pp. 279-283
    • Wolfe, N.D.1    Dunavan, C.P.2    Diamond, J.3
  • 118
    • 0029073143 scopus 로고
    • Functional equivalence of Escherichia coli sigma (E) and Pseudomonas aeruginosa Algu - Escherichia coli Rpoe restores mucoidy and reduces sensitivity to reactive oxygen intermediates in Algu mutants of Pseudomonas aeruginosa
    • Yu, H., Schurr, M. J., and Deretic, V. (1995). Functional equivalence of Escherichia coli sigma (E) and Pseudomonas aeruginosa Algu - Escherichia coli Rpoe restores mucoidy and reduces sensitivity to reactive oxygen intermediates in Algu mutants of Pseudomonas aeruginosa. J. Bacteriol. 177, 3259-3268.
    • (1995) J. Bacteriol. , vol.177 , pp. 3259-3268
    • Yu, H.1    Schurr, M.J.2    Deretic, V.3
  • 119
    • 0035717033 scopus 로고    scopus 로고
    • Genome independence in insectbacterium symbioses
    • Zientz, E., Silva, F. J., and Gross, R. (2001). Genome independence in insectbacterium symbioses. Genome Biol. 2, 1032.1-1032.6.
    • (2001) Genome Biol , vol.2
    • Zientz, E.1    Silva, F.J.2    Gross, R.3
  • 120
    • 0032993268 scopus 로고    scopus 로고
    • Obligate intracellular parasites: Rickettsia prowazekii and Chlamydia trachomatis
    • Zomorodipour, A., and Andersson, S. G. (1999). Obligate intracellular parasites: Rickettsia prowazekii and Chlamydia trachomatis. FEBS Lett. 452, 11-15
    • (1999) FEBS Lett , vol.452 , pp. 11-15
    • Zomorodipour, A.1    Andersson, S.G.2


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