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Volumn 4, Issue 9, 2008, Pages

Origin, spread and demography of the Mycobacterium tuberculosis complex

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL TRANSMISSION; BAYES THEOREM; DEMOGRAPHY; GENETIC MARKER; GENETIC VARIABILITY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; TANDEM REPEAT; TUBERCULOSIS; ANIMAL; EVOLUTION; GENETICS; HUMAN; PHYLOGENY; SPECIES DIFFERENCE; ZOONOSIS;

EID: 53049085393     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1000160     Document Type: Article
Times cited : (363)

References (52)
  • 1
    • 0011523808 scopus 로고    scopus 로고
    • Global Tuberculosis Control
    • Organization WH , Geneva: W.H.O
    • Organization WH (2006) Global Tuberculosis Control, WHO Report. Geneva: W.H.O.
    • (2006) WHO Report
  • 2
    • 33745726538 scopus 로고    scopus 로고
    • Impact of bacterial genetics on the transmission of isoniazid-resistant Mycobacterium tuberculosis
    • doi:10.1371/journal.ppat. 0020061
    • Gagneux S, Burgos MV, DeRiemer K, Encisco A, Munoz S, et al. (2006) Impact of bacterial genetics on the transmission of isoniazid-resistant Mycobacterium tuberculosis. PLoS Pathog 2: e61. doi:10.1371/journal.ppat. 0020061.
    • (2006) PLoS Pathog , vol.2
    • Gagneux, S.1    Burgos, M.V.2    DeRiemer, K.3    Encisco, A.4    Munoz, S.5
  • 3
    • 1842788227 scopus 로고    scopus 로고
    • Stable association between strains of Mycobacterium tuberculosis and their human host populations
    • Hirsh AE, Tsolaki AG, DeRiemer K, Feldman MW, Small PM (2004) Stable association between strains of Mycobacterium tuberculosis and their human host populations. Proc Natl Acad Sci U S A 101: 4871-4876.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 4871-4876
    • Hirsh, A.E.1    Tsolaki, A.G.2    DeRiemer, K.3    Feldman, M.W.4    Small, P.M.5
  • 5
    • 0037244915 scopus 로고    scopus 로고
    • Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area
    • Supply P, Warren RM, Banuls AL, Lesjean S, Van Der Spuy GD, et al. (2003) Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area. Mol Microbiol 47: 529-538.
    • (2003) Mol Microbiol , vol.47 , pp. 529-538
    • Supply, P.1    Warren, R.M.2    Banuls, A.L.3    Lesjean, S.4    Van Der Spuy, G.D.5
  • 6
    • 77951051763 scopus 로고    scopus 로고
    • Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis
    • doi:10.1371/journal.ppat.0010005
    • Gutierrez MC, Brisse S, Brosch R, Fabre M, Omais B, et al. (2005) Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis. PLoS Pathog 1: e5. doi:10.1371/journal.ppat.0010005.
    • (2005) PLoS Pathog , vol.1
    • Gutierrez, M.C.1    Brisse, S.2    Brosch, R.3    Fabre, M.4    Omais, B.5
  • 7
    • 0023514080 scopus 로고
    • Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes
    • Ochman H, Wilson AC (1987) Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J Mol Evol 26: 74-86.
    • (1987) J Mol Evol , vol.26 , pp. 74-86
    • Ochman, H.1    Wilson, A.C.2
  • 8
    • 33750085449 scopus 로고    scopus 로고
    • Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rusch-Gerdes S, et al. (2006) Proposal for standardization of optimized Mycobacterial Interspersed Repetitive Unit-Variable Number Tandem Repeat typing of Mycobacterium tuberculosis. J Clin Microbiol.
    • Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rusch-Gerdes S, et al. (2006) Proposal for standardization of optimized Mycobacterial Interspersed Repetitive Unit-Variable Number Tandem Repeat typing of Mycobacterium tuberculosis. J Clin Microbiol.
  • 9
    • 0034018329 scopus 로고    scopus 로고
    • Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome
    • Supply P, Mazars E, Lesjean S, Vincent V, Gicquel B, et al. (2000) Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microbiol 36: 762-771.
    • (2000) Mol Microbiol , vol.36 , pp. 762-771
    • Supply, P.1    Mazars, E.2    Lesjean, S.3    Vincent, V.4    Gicquel, B.5
  • 11
    • 33749514980 scopus 로고    scopus 로고
    • Brisse S, Supply P, Brosch R, Vincent V, Gutierrez MC (2006) A re-evaluation of M. prototuberculosis: continuing the debate. PLoS Pathog 2: e95. doi:10.1371/journal.ppat.0020095.
    • Brisse S, Supply P, Brosch R, Vincent V, Gutierrez MC (2006) "A re-evaluation of M. prototuberculosis": continuing the debate. PLoS Pathog 2: e95. doi:10.1371/journal.ppat.0020095.
  • 14
    • 12244289618 scopus 로고    scopus 로고
    • Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains
    • Gutacker MM, Smoot JC, Migliaccio CA, Ricklefs SM, Hua S, et al. (2002) Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: resolution of genetic relationships among closely related microbial strains. Genetics 162: 1533-1543.
    • (2002) Genetics , vol.162 , pp. 1533-1543
    • Gutacker, M.M.1    Smoot, J.C.2    Migliaccio, C.A.3    Ricklefs, S.M.4    Hua, S.5
  • 16
    • 34247152126 scopus 로고    scopus 로고
    • Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development
    • Gagneux S, Small PM (2007) Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. Lancet Infect Dis 7: 328-337.
    • (2007) Lancet Infect Dis , vol.7 , pp. 328-337
    • Gagneux, S.1    Small, P.M.2
  • 17
    • 29744433066 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites
    • Gutacker MM, Mathema B, Soini H, Shashkina E, Kreiswirth BN, et al. (2006) Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. J Infect Dis 193: 121-128.
    • (2006) J Infect Dis , vol.193 , pp. 121-128
    • Gutacker, M.M.1    Mathema, B.2    Soini, H.3    Shashkina, E.4    Kreiswirth, B.N.5
  • 18
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 19
    • 1842738286 scopus 로고    scopus 로고
    • Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: Lessons from Ladakh
    • Wirth T, Wang X, Linz B, Novick RP, Lum JK, et al. (2004) Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: lessons from Ladakh. Proc Natl Acad Sci U S A 101: 4746-4751.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 4746-4751
    • Wirth, T.1    Wang, X.2    Linz, B.3    Novick, R.P.4    Lum, J.K.5
  • 20
    • 0037423837 scopus 로고    scopus 로고
    • Traces of human migrations in Helicobacter pylori populations
    • Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, et al. (2003) Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
    • (2003) Science , vol.299 , pp. 1582-1585
    • Falush, D.1    Wirth, T.2    Linz, B.3    Pritchard, J.K.4    Stephens, M.5
  • 21
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: An evolutionary perspective
    • Wirth T, Falush D, Lan R, Colles F, Mensa P, et al. (2006) Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 60: 1136-1151.
    • (2006) Mol Microbiol , vol.60 , pp. 1136-1151
    • Wirth, T.1    Falush, D.2    Lan, R.3    Colles, F.4    Mensa, P.5
  • 22
    • 35948940118 scopus 로고    scopus 로고
    • The rise and spread of a new pathogen: Seroresistant Moraxella catarrhalis
    • Wirth T, Morelli G, Kusecek B, van Belkum A, van der Schee C, et al. (2007) The rise and spread of a new pathogen: Seroresistant Moraxella catarrhalis. Genome Res 17: 1647-1656.
    • (2007) Genome Res , vol.17 , pp. 1647-1656
    • Wirth, T.1    Morelli, G.2    Kusecek, B.3    van Belkum, A.4    van der Schee, C.5
  • 23
    • 14844358868 scopus 로고    scopus 로고
    • HP-rare: A computer program for performing rarefaction on measures of allelic diversity
    • Kalinowski ST (2005) HP-rare: a computer program for performing rarefaction on measures of allelic diversity. Molecular Ecology Notes 5: 187-189.
    • (2005) Molecular Ecology Notes , vol.5 , pp. 187-189
    • Kalinowski, S.T.1
  • 24
    • 0142027594 scopus 로고    scopus 로고
    • Multiple origins of Ashkenazi Levites: Y chromosome evidence for both Near Eastern and European ancestries
    • Behar DM, Thomas MG, Skorecki K, Hammer MF, Bulygina E, et al. (2003) Multiple origins of Ashkenazi Levites: Y chromosome evidence for both Near Eastern and European ancestries. Am J Hum Genet 73: 768-779.
    • (2003) Am J Hum Genet , vol.73 , pp. 768-779
    • Behar, D.M.1    Thomas, M.G.2    Skorecki, K.3    Hammer, M.F.4    Bulygina, E.5
  • 25
    • 0032713236 scopus 로고    scopus 로고
    • Detecting population expansion and decline using microsatellites
    • Beaumont MA (1999) Detecting population expansion and decline using microsatellites. Genetics 153: 2013-2029.
    • (1999) Genetics , vol.153 , pp. 2013-2029
    • Beaumont, M.A.1
  • 26
    • 33744982094 scopus 로고    scopus 로고
    • Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7
    • Vogler AJ, Keys C, Nemoto Y, Colman RE, Jay Z, et al. (2006) Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J Bacteriol 188: 4253-4263.
    • (2006) J Bacteriol , vol.188 , pp. 4253-4263
    • Vogler, A.J.1    Keys, C.2    Nemoto, Y.3    Colman, R.E.4    Jay, Z.5
  • 27
    • 0030808252 scopus 로고    scopus 로고
    • Microsatellite instability in yeast: Dependence on the length of the microsatellite
    • Wierdl M, Dominska M, Petes TD (1997) Microsatellite instability in yeast: dependence on the length of the microsatellite. Genetics 146: 769-779.
    • (1997) Genetics , vol.146 , pp. 769-779
    • Wierdl, M.1    Dominska, M.2    Petes, T.D.3
  • 28
    • 33747129693 scopus 로고    scopus 로고
    • Going east: New genetic and archaeological perspectives on the modern human colonization of Eurasia
    • Mellars P (2006) Going east: new genetic and archaeological perspectives on the modern human colonization of Eurasia. Science 313: 796-800.
    • (2006) Science , vol.313 , pp. 796-800
    • Mellars, P.1
  • 29
    • 33847201150 scopus 로고    scopus 로고
    • An African origin for the intimate association between humans and Helicobacter pylori
    • Linz B, Balloux F, Moodley Y, Manica A, Liu H, et al. (2007) An African origin for the intimate association between humans and Helicobacter pylori. Nature 445: 915-918.
    • (2007) Nature , vol.445 , pp. 915-918
    • Linz, B.1    Balloux, F.2    Moodley, Y.3    Manica, A.4    Liu, H.5
  • 32
    • 0035953690 scopus 로고    scopus 로고
    • Genetic evidence for Near-Eastern origins of European cattle
    • Troy CS, MacHugh DE, Bailey JF, Magee DA, Loftus RT, et al. (2001) Genetic evidence for Near-Eastern origins of European cattle. Nature 410: 1088-1091.
    • (2001) Nature , vol.410 , pp. 1088-1091
    • Troy, C.S.1    MacHugh, D.E.2    Bailey, J.F.3    Magee, D.A.4    Loftus, R.T.5
  • 33
    • 0034708628 scopus 로고    scopus 로고
    • The initial domestication of goats (Capra hircus) in the Zagros mountains 10,000 years ago
    • Zeder MA, Hesse B (2000) The initial domestication of goats (Capra hircus) in the Zagros mountains 10,000 years ago. Science 287: 2254-2257.
    • (2000) Science , vol.287 , pp. 2254-2257
    • Zeder, M.A.1    Hesse, B.2
  • 34
    • 0037043719 scopus 로고    scopus 로고
    • Evolution, consequences and future of plant and animal domestication
    • Diamond J (2002) Evolution, consequences and future of plant and animal domestication. Nature 418: 700-707.
    • (2002) Nature , vol.418 , pp. 700-707
    • Diamond, J.1
  • 35
    • 31544451343 scopus 로고    scopus 로고
    • Deciphering host migrations and origins by means of their microbes
    • Wirth T, Meyer A, Achtman M (2005) Deciphering host migrations and origins by means of their microbes. Mol Ecol 14: 3289-3306.
    • (2005) Mol Ecol , vol.14 , pp. 3289-3306
    • Wirth, T.1    Meyer, A.2    Achtman, M.3
  • 38
    • 0029284829 scopus 로고
    • When did Mycobacterium tuberculosis infection first occur in the New World? An important question with public health implications
    • Stead WW, Eisenach KD, Cave MD, Beggs ML, Templeton GL, et al. (1995) When did Mycobacterium tuberculosis infection first occur in the New World? An important question with public health implications. Am J Respir Crit Care Med 151: 1267-1268.
    • (1995) Am J Respir Crit Care Med , vol.151 , pp. 1267-1268
    • Stead, W.W.1    Eisenach, K.D.2    Cave, M.D.3    Beggs, M.L.4    Templeton, G.L.5
  • 39
    • 0030931719 scopus 로고    scopus 로고
    • Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
    • Sreevatsan S, Pan X, Stockbauer KE, Connell ND, Kreiswirth BN, et al. (1997) Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci U S A 94: 9869-9874.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 9869-9874
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.E.3    Connell, N.D.4    Kreiswirth, B.N.5
  • 40
    • 0036180137 scopus 로고    scopus 로고
    • Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets
    • Skuce RA, McCorry TP, McCarroll JF, Roring SM, Scott AN, et al. (2002) Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets. Microbiology 148: 519-528.
    • (2002) Microbiology , vol.148 , pp. 519-528
    • Skuce, R.A.1    McCorry, T.P.2    McCarroll, J.F.3    Roring, S.M.4    Scott, A.N.5
  • 41
    • 0036847772 scopus 로고    scopus 로고
    • Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis
    • Hughes AL, Friedman R, Murray M (2002) Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis. Emerg Infect Dis 8: 1342-1346.
    • (2002) Emerg Infect Dis , vol.8 , pp. 1342-1346
    • Hughes, A.L.1    Friedman, R.2    Murray, M.3
  • 43
    • 4544319040 scopus 로고    scopus 로고
    • Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing
    • Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, et al. (2004) Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci U S A 101: 13536-13541.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 13536-13541
    • Pearson, T.1    Busch, J.D.2    Ravel, J.3    Read, T.D.4    Rhoton, S.D.5
  • 44
    • 4444240785 scopus 로고    scopus 로고
    • Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis
    • Baker L, Brown T, Maiden MC, Drobniewski F (2004) Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis. Emerg Infect Dis 10: 1568-1577.
    • (2004) Emerg Infect Dis , vol.10 , pp. 1568-1577
    • Baker, L.1    Brown, T.2    Maiden, M.C.3    Drobniewski, F.4
  • 45
    • 30744460678 scopus 로고    scopus 로고
    • Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: Insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set
    • Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbon MH, et al. (2006) Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol 188: 759-772.
    • (2006) J Bacteriol , vol.188 , pp. 759-772
    • Filliol, I.1    Motiwala, A.S.2    Cavatore, M.3    Qi, W.4    Hazbon, M.H.5
  • 46
    • 33745615117 scopus 로고    scopus 로고
    • The competitive cost of antibiotic resistance in Mycobacterium tuberculosis
    • Gagneux S, Long CD, Small PM, Van T, Schoolnik GK, et al. (2006) The competitive cost of antibiotic resistance in Mycobacterium tuberculosis. Science 312: 1944-1946.
    • (2006) Science , vol.312 , pp. 1944-1946
    • Gagneux, S.1    Long, C.D.2    Small, P.M.3    Van, T.4    Schoolnik, G.K.5
  • 47
    • 0034796701 scopus 로고    scopus 로고
    • Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units
    • Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, et al. (2001) Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 39: 3563-3571.
    • (2001) J Clin Microbiol , vol.39 , pp. 3563-3571
    • Supply, P.1    Lesjean, S.2    Savine, E.3    Kremer, K.4    van Soolingen, D.5
  • 48
    • 0020965531 scopus 로고    scopus 로고
    • Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol 19: 153-170.
    • Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol 19: 153-170.
  • 49
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 51
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
    • (2004) J Bacteriol , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 52
    • 0036006020 scopus 로고    scopus 로고
    • Testing for genetic evidence of population expansion and contraction: An empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model
    • Storz JF, Beaumont MA (2002) Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model. Evolution Int J Org Evolution 56: 154-166.
    • (2002) Evolution Int J Org Evolution , vol.56 , pp. 154-166
    • Storz, J.F.1    Beaumont, M.A.2


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