-
1
-
-
33646831205
-
Molecular Markers, Natural History and Evolution
-
New York
-
Avise , J. C. ( 1994 ) Molecular Markers, Natural History and Evolution . Chapman and Hall , New York .
-
(1994)
Chapman and Hall
-
-
Avise, J.C.1
-
2
-
-
36849054547
-
The rise and fall of deleterious mutation
-
Balbi , K. J. and Feil , E. J. ( 2007 ) The rise and fall of deleterious mutation . Res Microbiol 158 , 779-786
-
(2007)
Res Microbiol
, vol.158
, pp. 779-786
-
-
Balbi, K.J.1
Feil, E.J.2
-
3
-
-
58449105125
-
The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp
-
Balbi , K. J. , Rocha , E. P. , and Feil , E. J. ( 2009 ) The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp . Mol Biol Evol 26 , 345-355 .
-
(2009)
Mol Biol Evol
, vol.26
, pp. 345-355
-
-
Balbi, K.J.1
Rocha, E.P.2
Feil, E.J.3
-
4
-
-
0001714012
-
Multilocus structure of natural populations of Hordeum spontaneum
-
Brown , A. H. , Feldman , M. W. , and Nevo , E. ( 1980 ) Multilocus structure of natural populations of Hordeum spontaneum . Genetics 96 , 523-536 .
-
(1980)
Genetics
, vol.96
, pp. 523-536
-
-
Brown, A.H.1
Feldman, M.W.2
Nevo, E.3
-
5
-
-
54449093613
-
Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis
-
Buckee , C. O. , Jolley , K. A. , Recker , M. , Penman , B. , Kriz , P. , Gupta , S. , and Maiden , M. C. ( 2008 ) Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis . Proc Natl Acad Sci U S A 105 , 15082-15087 .
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15082-15087
-
-
Buckee, C.O.1
Jolley, K.A.2
Recker, M.3
Penman, B.4
Kriz, P.5
Gupta, S.6
Maiden, M.C.7
-
6
-
-
0023229289
-
Genetic relationships and clonal population structure of serotype 2 strains of Neisseria meningitidis
-
Caugant , D. A. , Zollinger , W. D. , Mocca , L. F. , Frasch , C. E. , Whittam , T. S. , Froholm , L. O. , and Selander , R. K. ( 1987 ) Genetic relationships and clonal population structure of serotype 2 strains of Neisseria meningitidis . Infect Immun 55 , 1503-1512 .
-
(1987)
Infect Immun
, vol.55
, pp. 1503-1512
-
-
Caugant, D.A.1
Zollinger, W.D.2
Mocca, L.F.3
Frasch, C.E.4
Whittam, T.S.5
Froholm, L.O.6
Selander, R.K.7
-
7
-
-
0036407157
-
What Are bacterial species?
-
Cohan , F. M. ( 2002 ) What are bacterial species? Annu Rev Microbiol 56 , 457-487 .
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
8
-
-
34247884459
-
A systematics for discovering the fundamental units of bacterial diversity
-
Cohan , F. M. and Perry , E. B. ( 2007 ) A systematics for discovering the fundamental units of bacterial diversity . Curr Biol 17 , R373 - R386 .
-
(2007)
Curr Biol
, vol.17
-
-
Cohan, F.M.1
Perry, E.B.2
-
9
-
-
71049183067
-
Genealogical typing of Neisseria meningitidis
-
Didelot , X. , Urwin , R. , Maiden , M. C. , and Falush , D. ( 2009 ) Genealogical typing of Neisseria meningitidis . Microbiology 155 (10), 3176-3186 .
-
(2009)
Microbiology
, vol.155
, Issue.10
, pp. 3176-3186
-
-
Didelot, X.1
Urwin, R.2
Maiden, M.C.3
Falush, D.4
-
10
-
-
77957743043
-
Eradicating typological thinking in prokaryotic systematics and evolution
-
Aug 10 [Epub ahead of print].
-
Doolittle , W. F. ( 2009 ) Eradicating typological thinking in prokaryotic systematics and evolution . Cold Spring Harb Symp Quant Biol , Aug 10 [Epub ahead of print].
-
(2009)
Cold Spring Harb Symp Quant Biol
-
-
Doolittle, W.F.1
-
11
-
-
2942679276
-
Small change: Keeping pace with microevolution
-
Feil , E. J. ( 2004 ) Small change: Keeping pace with microevolution . Nat Rev Microbiol 2 , 483-495 .
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 483-495
-
-
Feil, E.J.1
-
12
-
-
1342304133
-
EBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil , E. J. , Li , B. C. , Aanensen , D. M. , Hanage , W. P. ,and Spratt , B. G. ( 2004 ) eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data . J Bacteriol 186 , 1518-1530 .
-
(2004)
J Bacteriol
, vol.186
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
13
-
-
0032733829
-
The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis
-
Feil , E. J. , Maiden , M. C. , Achtman , M. , and Spratt , B. G. ( 1999 ) The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis . Mol Biol Evol 16 , 1496-1502 .
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1496-1502
-
-
Feil, E.J.1
Maiden, M.C.2
Achtman, M.3
Spratt, B.G.4
-
14
-
-
0034128665
-
Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data
-
Feil , E. J. , Smith , J. M. , Enright , M. C. , and Spratt , B. G. ( 2000 ) Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data . Genetics 154 , 1439-1450 .
-
(2000)
Genetics
, vol.154
, pp. 1439-1450
-
-
Feil, E.J.1
Smith, J.M.2
Enright, M.C.3
Spratt, B.G.4
-
15
-
-
67650093575
-
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
-
Francisco , A. P. , Bugalho , M. , Ramirez , M. , and Carrico , J. A. ( 2009 ) Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach . B MC Bioinformatics 10 , 152 .
-
(2009)
B MC Bioinformatics
, vol.10
, pp. 152
-
-
Francisco, A.P.1
Bugalho, M.2
Ramirez, M.3
Carrico, J.A.4
-
16
-
-
59849086092
-
The bacterial species challenge: Making sense of genetic and ecological diversity
-
Fraser , C. , Alm , E. J. , Polz , M. F. , Spratt , B. G. , and Hanage , W. P. ( 2009 ) The bacterial species challenge: Making sense of genetic and ecological diversity . Science 323 , 741-746 .
-
(2009)
Science
, vol.323
, pp. 741-746
-
-
Fraser, C.1
Alm, E.J.2
Polz, M.F.3
Spratt, B.G.4
Hanage, W.P.5
-
17
-
-
13844309567
-
Neutral microepidemic evolution of bacterial pathogens
-
Fraser , C. , Hanage , W. P. , and Spratt , B. G. ( 2005 ) Neutral microepidemic evolution of bacterial pathogens . Proc Natl Acad Sci U S A 102 , 1968-1973 .
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 1968-1973
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
18
-
-
33846625056
-
Recombination and the nature of bacterial speciation
-
Fraser , C. , Hanage , W. P. , and Spratt , B. G. ( 2007 ) Recombination and the nature of bacterial speciation . Science 315 , 476-480 .
-
(2007)
Science
, vol.315
, pp. 476-480
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
19
-
-
23944437942
-
Opinion: Re - evaluating prokaryotic species
-
Gevers , D. , Cohan , F. M. , Lawrence , J. G. , Spratt , B. G. , Coenye , T. , Feil , E. J. , Stackebrandt , E. , Van de Peer , Y. , Vandamme , P. , Thompson , F. L. , and Swings , J. ( 2005 ) Opinion: Re - evaluating prokaryotic species . Nat Rev Microbiol 3 , 733-739 .
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 733-739
-
-
Gevers, D.1
Cohan, F.M.2
Lawrence, J.G.3
Spratt, B.G.4
Coenye, T.5
Feil, E.J.6
Stackebrandt, E.7
Van de Peer, Y.8
Vandamme, P.9
Thompson, F.L.10
Swings, J.11
-
20
-
-
0004452894
-
Molecular evolution and the neutral allele theory
-
Gillespie , J. H. ( 1987 ) Molecular evolution and the neutral allele theory . Oxf Surv Evol Biol 4 , 10-37 .
-
(1987)
Oxf Surv Evol Biol
, vol.4
, pp. 10-37
-
-
Gillespie, J.H.1
-
21
-
-
68849113436
-
Metapopulation structure for perpetuation of Francisella tularensis tularensis
-
Goethert , H. K. , Saviet , B. , and Telford , S. R. III ( 2009 ) Metapopulation structure for perpetuation of Francisella tularensis tularensis . BMC Microbiol 9 , 147 .
-
(2009)
BMC Microbiol
, vol.9
, pp. 147
-
-
Goethert, H.K.1
Saviet, B.2
Telford S.R.III3
-
22
-
-
0028605344
-
Clonal divergence in Escherichia coli as a result of recombination, not mutation
-
Guttman , D. S. and Dykhuizen , D. E. ( 1994 ) Clonal divergence in Escherichia coli as a result of recombination, not mutation . Science 266 , 1380-1383 .
-
(1994)
Science
, vol.266
, pp. 1380-1383
-
-
Guttman, D.S.1
Dykhuizen, D.E.2
-
23
-
-
39749133684
-
Toward a selection theory of molecular evolution
-
Hahn , M. W. ( 2008 ) Toward a selection theory of molecular evolution . Evolution 62 , 255-265 .
-
(2008)
Evolution
, vol.62
, pp. 255-265
-
-
Hahn, M.W.1
-
24
-
-
0014024750
-
Enzyme polymorphisms in man
-
Harris , H. ( 1966 ) Enzyme polymorphisms in man . Proc R Soc Lond B Biol Sci 164 , 298-310 .
-
(1966)
Proc R Soc Lond B Biol Sci
, vol.164
, pp. 298-310
-
-
Harris, H.1
-
25
-
-
0033664744
-
LIAN 3.0: Detecting linkage disequilibrium in multilocus data. Linkage analysis
-
Haubold , B. and Hudson , R. R. ( 2000 ) LIAN 3.0: Detecting linkage disequilibrium in multilocus data. Linkage analysis . Bioinformatics 16 , 847-848 .
-
(2000)
Bioinformatics
, vol.16
, pp. 847-848
-
-
Haubold, B.1
Hudson, R.R.2
-
26
-
-
58549090911
-
Selection on codon bias
-
Hershberg , R. and Petrov , D. A. ( 2008 ) Selection on codon bias . Annu Rev Genet 42 , 287-299 .
-
(2008)
Annu Rev Genet
, vol.42
, pp. 287-299
-
-
Hershberg, R.1
Petrov, D.A.2
-
27
-
-
0027947326
-
Analytical results concerning linkage disequlibrium in models with genetic transformation and conjugation
-
Hudson , R. R. ( 1994 ) Analytical results concerning linkage disequlibrium in models with genetic transformation and conjugation . J Evol Biol 7 , 535-548 .
-
(1994)
J Evol Biol
, vol.7
, pp. 535-548
-
-
Hudson, R.R.1
-
28
-
-
65549131178
-
A Stenotrophomonas maltophilia multilocus sequence typing scheme for inferring population structure
-
Kaiser , S. , Biehler , K. , and Jonas , D. ( 2009 ) A Stenotrophomonas maltophilia multilocus sequence typing scheme for inferring population structure . J Bacteriol 191 , 2934-2943 .
-
(2009)
J Bacteriol
, vol.191
, pp. 2934-2943
-
-
Kaiser, S.1
Biehler, K.2
Jonas, D.3
-
29
-
-
0014421064
-
Evolutionary rate at the molecular level
-
Kimura , M. ( 1968a ) Evolutionary rate at the molecular level . Nature 217 , 624-626 .
-
(1968)
Nature
, vol.217
, pp. 624-626
-
-
Kimura, M.1
-
30
-
-
0014296201
-
Genetic variability maintained in a fi nite population due to mutational production of neutral and nearly neutral isoalleles
-
Kimura , M. ( 1968b ) Genetic variability maintained in a fi nite population due to mutational production of neutral and nearly neutral isoalleles . Genet Res 11 , 247-269 .
-
(1968)
Genet Res
, vol.11
, pp. 247-269
-
-
Kimura, M.1
-
31
-
-
0018544480
-
The neutral theory of molecular evolution
-
102 , 108 passim.
-
Kimura , M. ( 1979 ) The neutral theory of molecular evolution . Sci Am 241 , 98-100 , 102 , 108 passim.
-
(1979)
Sci Am
, vol.241
, pp. 98-100
-
-
Kimura, M.1
-
32
-
-
75949146309
-
The number of alleles that can be maintained in a fi nite population
-
Kimura , M. and Crow , J. F. ( 1964 ) The number of alleles that can be maintained in a fi nite population . Genetics 49 , 725-738 .
-
(1964)
Genetics
, vol.49
, pp. 725-738
-
-
Kimura, M.1
Crow, J.F.2
-
33
-
-
40649125049
-
Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics
-
Koeppel , A. , Perry , E. B. , Sikorski , J. , Krizanc , D. , Warner , A. , Ward , D. M. , Rooney , A. P. , Brambilla , E. , Connor , N. , Ratcliff , R. M. , Nevo , E. , and Cohan , F. M. ( 2008 ) Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics . Proc Natl Acad Sci U S A 105 , 2504-2509 .
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2504-2509
-
-
Koeppel, A.1
Perry, E.B.2
Sikorski, J.3
Krizanc, D.4
Warner, A.5
Ward, D.M.6
Rooney, A.P.7
Brambilla, E.8
Connor, N.9
Ratcliff, R.M.10
Nevo, E.11
Cohan, F.M.12
-
34
-
-
0027280556
-
Assessing the genetic structure of microbial populations
-
Lenski , R. E. ( 1993 ) Assessing the genetic structure of microbial populations . Proc Natl Acad Sci U S A 90 , 4334-4336 .
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 4334-4336
-
-
Lenski, R.E.1
-
35
-
-
0019619751
-
Periodic selection, infectious gene exchange and the genetic structure of E. coli populations
-
Levin , B. R. ( 1981 ) Periodic selection, infectious gene exchange and the genetic structure of E. coli populations . Genetics 99 , 1-23 .
-
(1981)
Genetics
, vol.99
, pp. 1-23
-
-
Levin, B.R.1
-
36
-
-
0013937664
-
A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura
-
Lewontin , R. C. and Hubby , J. L. ( 1966 ) A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura . Genetics 54 , 595-609 .
-
(1966)
Genetics
, vol.54
, pp. 595-609
-
-
Lewontin, R.C.1
Hubby, J.L.2
-
37
-
-
33750290454
-
Multilocus sequence typing of bacteria
-
Maiden , M. C. ( 2006 ) Multilocus sequence typing of bacteria . Annu Rev Microbiol 60 , 561-588 .
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 561-588
-
-
Maiden, M.C.1
-
38
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identifi cation of clones within populations of pathogenic microorganisms
-
Maiden , M. C. , Bygraves , J. A. , Feil , E. , Morelli , G. , Russell , J. E. , Urwin , R. , Zhang , Q. , Zhou , J. , Zurth , K. , Caugant , D. A. , Feavers , I. M. , Achtman , M. , and Spratt , B. G. ( 1998 ) Multilocus sequence typing: A portable approach to the identifi cation of clones within populations of pathogenic microorganisms . Proc Natl Acad Sci U S A 95 , 3140-3145 .
-
(1998)
Proc Natl Acad Sci USA
, vol.9
, pp. 3140-3145
-
-
Maiden, M.C.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
Urwin, R.6
Zhang, Q.7
Zhou, J.8
Zurth, K.9
Caugant, D.A.10
Feavers, I.M.11
Achtman, M.12
Spratt, B.G.13
-
39
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny , J. B. , Bohannan , B. J. , Brown , J. H. , Colwell , R. K. , Fuhrman , J. A. , Green , J. L. , Horner - Devine , M. C. , Kane , M. , Krumins , J. A. , Kuske , C. R. , Morin , P. J. , Naeem , S. , Ovreas , L. , Reysenbach , A. L. , Smith , V. H. , and Staley , J. T. ( 2006 ) Microbial biogeography: Putting microorganisms on the map . Nat Rev Microbiol 4 , 102-112 .
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.1
Bohannan, B.J.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Ovreas, L.13
Reysenbach, A.L.14
Smith, V.H.15
Staley, J.T.16
-
40
-
-
0015917096
-
Electrophoretic variation in Escherichia coli from natural sources
-
Milkman , R. ( 1973 ) Electrophoretic variation in Escherichia coli from natural sources . Science 182 , 1024-1026 .
-
(1973)
Science
, vol.182
, pp. 1024-1026
-
-
Milkman, R.1
-
41
-
-
0023804309
-
Evolutionary genetics of the encapsulated strains of Haemophilus infl uenzae
-
Musser , J. M. , Kroll , J. S. , Moxon , E. R. , and Selander , R. K. ( 1988 ) Evolutionary genetics of the encapsulated strains of Haemophilus infl uenzae . Proc Natl Acad Sci U S A 85 , 7758-7762 .
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 7758-7762
-
-
Musser J.M1
Kroll, J.S.2
Moxon, E.R.3
Selander, R.K.4
-
42
-
-
33644749286
-
Recombination in Thermotoga: Implications for species concepts and biogeography
-
Nesbo , C. L. , Dlutek , M. , and Doolittle , W. F. ( 2006 ) Recombination in Thermotoga: Implications for species concepts and biogeography . Genetics 172 , 759-769 .
-
(2006)
Genetics
, vol.172
, pp. 759-769
-
-
Nesbo, C.L.1
Dlutek, M.2
Doolittle, W.F.3
-
43
-
-
13344253147
-
Esterases of cyrstalliferous bacteria pathogenic for insects: Epizootological application
-
Norris , J. R. ( 1963 ) Esterases of cyrstalliferous bacteria pathogenic for insects: Epizootological application . J Insect Pathol 5 , 460-472 .
-
(1963)
J Insect Pathol
, vol.5
, pp. 460-472
-
-
Norris, J.R.1
-
44
-
-
0343696952
-
Evidence for clonal population structure in Escherichia coli
-
Ochman , H. and Selander , R. K. ( 1984 ) Evidence for clonal population structure in Escherichia coli . Proc Natl Acad Sci U S A 81 , 198-201 .
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, pp. 198-201
-
-
Ochman, H.1
Selander, R.K.2
-
45
-
-
0015722319
-
Slightly deleterious mutant substitutions in evolution
-
Ohta , T. ( 1973 ) Slightly deleterious mutant substitutions in evolution . N ature 246 , 96-98 .
-
(1973)
N ature
, vol.246
, pp. 96-98
-
-
Ohta, T.1
-
46
-
-
0015698738
-
Plasmid - determined H2S character in Escherichia coli and its relation to plasmid - carried raffi nose fermentation and tetracycline resistance characters. Examination of 32 H2S - positive strains isolated during the years 1950 to 1971
-
Orskov , I. and Orskov , F. ( 1973 ) Plasmid - determined H2S character in Escherichia coli and its relation to plasmid - carried raffi nose fermentation and tetracycline resistance characters. Examination of 32 H2S - positive strains isolated during the years 1950 to 1971 . J Gen Microbiol 77 , 487-499 .
-
(1973)
J Gen Microbiol
, vol.77
, pp. 487-499
-
-
Orskov, I.1
Orskov, F.2
-
47
-
-
70149120519
-
Microbial biogeography of six salt lakes in Inner Mongolia China and a salt lake in Argentina
-
Pagaling , E. , Wang , H. , Venables , M. , Wallace , A. , Grant , W. D. , Cowan , D. A. , Jones , B. E. , Ma , Y. , Ventosa , A. , and Heaphy , S. ( 2009 ) Microbial biogeography of six salt lakes in Inner Mongolia China and a salt lake in Argentina . Appl Environ Microbiol 75 (18), 5750-5760 .
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.18
, pp. 5750-5760
-
-
Pagaling, E.1
Wang, H.2
Venables, M.3
Wallace, A.4
Grant, W.D.5
Cowan, D.A.6
Jones, B.E.7
Ma, Y.8
Ventosa, A.9
Heaphy, S.10
-
48
-
-
35348887800
-
Searching for species in haloarchaea
-
Papke , R. T. , Zhaxybayeva , O. , Feil , E. J. , Sommerfeld , K. , Muise , D. , and Doolittle , W. F. ( 2007 ) Searching for species in haloarchaea . Proc Natl Acad Sci U S A 104 , 14092-14097 .
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 14092-14097
-
-
Papke, R.T.1
Zhaxybayeva, O.2
Feil, E.J.3
Sommerfeld, K.4
Muise, D.5
Doolittle, W.F.6
-
49
-
-
33847327474
-
Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution
-
Ramette , A. and Tiedje , J. M. ( 2007 ) Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution . Microb Ecol 53 , 197-207 .
-
(2007)
Microb Ecol
, vol.53
, pp. 197-207
-
-
Ramette, A.1
Tiedje, J.M.2
-
50
-
-
33644630612
-
Comparisons of dN/dS are time dependent for closely related bacterial genomes
-
Rocha , E. P. , Smith , J. M. , Hurst , L. D. , Holden , M. T. , Cooper , J. E. , Smith , N. H. , and Feil , E. J. ( 2006 ) Comparisons of dN/dS are time dependent for closely related bacterial genomes . J Theor Biol 239 , 226-235 .
-
(2006)
J Theor Biol
, vol.239
, pp. 226-235
-
-
Rocha, E.P.1
Smith, J.M.2
Hurst, L.D.3
Holden, M.T.4
Cooper, J.E.5
Smith, N.H.6
Feil, E.J.7
-
51
-
-
69949090642
-
Comparisons between geographically diverse samples of carried Staphylococcus aureus
-
Ruimy , R. , Armand - Lefevre , L. , Barbier , F. , Ruppe , E. , Cocojaru , R. , Mesli , Y. , Maiga , A. , Benkalfat , M. , Benchouk , S. , Hassaine , H. , Dufourcq , J. B. , Nareth , C. , Sarthou , J. L. , Andremont , A. , and Feil , E. J. ( 2009 ) Comparisons between geographically diverse samples of carried Staphylococcus aureus . J Bacteriol 191 , 5577-5583 .
-
(2009)
J Bacteriol
, vol.191
, pp. 5577-5583
-
-
Ruimy, R.1
Armand-Lefevre, L.2
Barbier, F.3
Ruppe, E.4
Cocojaru, R.5
Mesli, Y.6
Maiga, A.7
Benkalfat, M.8
Benchouk, S.9
Hassaine, H.10
Dufourcq, J.B.11
Nareth, C.12
Sarthou, J.L.13
Andremont, A.14
Feil, E.J.15
-
52
-
-
0022544449
-
Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics
-
Selander , R. K. , Caugant , D. A. , Ochman , H. , Musser , J. M. , Gilmour , M. N. , and Whittam , T. S. ( 1986 ) Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics . Appl Environ Microbiol 51 , 873-884 .
-
(1986)
Appl Environ Microbiol
, vol.51
, pp. 873-884
-
-
Selander, R.K.1
Caugant, D.A.2
Ochman, H.3
Musser, J.M.4
Gilmour, M.N.5
Whittam, T.S.6
-
53
-
-
0023378818
-
Population genetics of pathogenic bacteria
-
Selander , R. K. , Musser , J. M. , Caugant , D. A. , Gilmour , M. N. , and Whittam , T. S. ( 1987 ) Population genetics of pathogenic bacteria . Microb Pathog 3 , 1-7 .
-
(1987)
Microb Pathog
, vol.3
, pp. 1-7
-
-
Selander, R.K.1
Musser, J.M.2
Caugant, D.A.3
Gilmour, M.N.4
Whittam, T.S.5
-
54
-
-
0034539018
-
Population structure and evolutionary dynamics of pathogenic bacteria
-
Smith , J. M. , Feil , E. J. , and Smith , N. H. ( 2000 ) Population structure and evolutionary dynamics of pathogenic bacteria . Bioessays 22 , 1115-1122 .
-
(2000)
Bioessays
, vol.22
, pp. 1115-1122
-
-
Smith, J.M.1
Feil, E.J.2
Smith, N.H.3
-
55
-
-
0027287389
-
How
-
Smith , J. M. , Smith , N. H. , O ' Rourke , M. , and Spratt , B. G. ( 1993 ) How clonal are bacteria? Proc Natl Acad Sci U S A 90 , 4384-4388 .
-
(1993)
Clonal are bacteria? Proc Natl Acad Sci U S A
, vol.90
, pp. 4384-4388
-
-
Smith, J.M.1
Smith, N.H.2
O'Rourke, M.3
Spratt, B.G.4
-
56
-
-
84943950780
-
Numerical Taxonomy
-
San Francisco
-
Sneath ( 1973 ) Numerical Taxonomy . W.H. Freeman and Company , San Francisco .
-
(1973)
W.H. Freeman and Company
-
-
Sneath1
-
57
-
-
0033614336
-
Bacterial population genetics, evolution and epidemiology
-
Spratt , B. G. and Maiden , M. C. ( 1999 ) Bacterial population genetics, evolution and epidemiology . Philos Trans R Soc Lond B Biol Sci 354 , 701-710 .
-
(1999)
Philos Trans R Soc Lond B Biol Sci
, vol.354
, pp. 701-710
-
-
Spratt, B.G.1
Maiden, M.C.2
-
58
-
-
33846065222
-
Data storm
-
Strous , M. ( 2007 ) Data storm . Environ Microbiol 9 , 10-11 .
-
(2007)
Environ Microbiol
, vol.9
, pp. 10-11
-
-
Strous, M.1
-
59
-
-
33846033611
-
The secret life of the multilocus sequence type
-
Turner , K. M. and Feil , E. J. ( 2007 ) The secret life of the multilocus sequence type . Int J Antimicrob Agents 29 , 129-135 .
-
(2007)
Int J Antimicrob Agents
, vol.29
, pp. 129-135
-
-
Turner, K.M.1
Feil, E.J.2
-
60
-
-
34249745345
-
Assessing the reliability of eBURST using simulated populations with known ancestry
-
Turner , K. M. , Hanage , W. P. , Fraser , C. , Connor , T. R. , and Spratt , B. G. ( 2007 ) Assessing the reliability of eBURST using simulated populations with known ancestry . BMC Microbiol 7 , 30 .
-
(2007)
BMC Microbiol
, vol.7
, pp. 30
-
-
Turner, K.M.1
Hanage, W.P.2
Fraser, C.3
Connor, T.R.4
Spratt, B.G.5
-
61
-
-
33746216126
-
Nonrandom distribution of Burkholderia pseudomallei clones in relation to geographical location and virulence
-
Vesaratchavest , M. , Tumapa , S. , Day , N. P. , Wuthiekanun , V. , Chierakul , W. , Holden , M. T. , White , N. J. , Currie , B. J. , Spratt , B. G. , Feil , E. J. , and Peacock , S. J. ( 2006 ) Nonrandom distribution of Burkholderia pseudomallei clones in relation to geographical location and virulence . J Clin Microbiol , 44 , 2553-7 .
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2553-2557
-
-
Vesaratchavest, M.1
Tumapa, S.2
Day, N.P.3
Wuthiekanun, V.4
Chierakul, W.5
Holden, M.T.6
White, N.J.7
Currie, B.J.8
Spratt, B.G.9
Feil, E.J.10
Peacock, S.J.11
-
63
-
-
68949202404
-
Local adaptation of bacteriophages to their bacterial hosts in soil
-
Vos , M. , Birkett , P. J. , Birch , E. , Griffi ths , R. I. , and Buckling , A. ( 2009 ) Local adaptation of bacteriophages to their bacterial hosts in soil . Science 325 , 833 .
-
(2009)
Science
, vol.325
, pp. 833
-
-
Vos, M.1
Birkett, P.J.2
Birch, E.3
Griffiths, R.I.4
Buckling, A.5
-
64
-
-
40149090779
-
Isolation by distance in the spore - forming soil bacterium Myxococcus xanthus
-
Vos , M. and Velicer , G. J. ( 2008 ) Isolation by distance in the spore - forming soil bacterium Myxococcus xanthus . Curr Biol 18 , 386-391 .
-
(2008)
Curr Biol
, vol.18
, pp. 386-391
-
-
Vos, M.1
Velicer, G.J.2
-
65
-
-
33746631363
-
Sau1: A novel lineage - specifi c type I restriction - modifi cation system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages
-
Waldron , D. E. and Lindsay , J. A. ( 2006 ) Sau1: A novel lineage - specifi c type I restriction - modifi cation system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages . J Bacteriol 188 , 5578-5585 .
-
(2006)
J Bacteriol
, vol.188
, pp. 5578-5585
-
-
Waldron, D.E.1
Lindsay, J.A.2
-
66
-
-
0036957370
-
Estimating F - statistics
-
Weir , B. S. and Hill , W. G. ( 2002 ) Estimating F - statistics . Annu Rev Genet 36 , 721-750 .
-
(2002)
Annu Rev Genet
, vol.36
, pp. 721-750
-
-
Weir, B.S.1
Hill, W.G.2
-
67
-
-
0042242559
-
Geographic barriers isolate endemic populations of hyperthermophilic archaea
-
Whitaker , R. J. , Grogan , D. W. , and Taylor , J. W. ( 2003 ) Geographic barriers isolate endemic populations of hyperthermophilic archaea . Science 301 , 976-978 .
-
(2003)
Science
, vol.301
, pp. 976-978
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
68
-
-
0020558165
-
Multilocus genetic structure in natural populations of Escherichia col
-
Whittam , T. S. , Ochman , H. , and Selander , R. K. ( 1983) Multilocus genetic structure in natural populations of Escherichia coli . Proc Natl Acad Sci U S A 80 , 1751-1755 .
-
(1983)
Proc Natl Acad Sci U S A
, vol.80
, pp. 1751-1755
-
-
Whittam, T.S.1
Ochman, H.2
Selander, R.K.3
-
69
-
-
58449131619
-
Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni
-
Wilson , D. J. , Gabriel , E. , Leatherbarrow , A. J. , Cheesbrough , J. , Gee , S. , Bolton , E. , Fox , A. , Hart , C. A. , Diggle , P. J. , and Fearnhead , P. ( 2009 ) Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni . Mol Biol Evol 26 , 385-397 .
-
(2009)
Mol Biol Evol
, vol.26
, pp. 385-397
-
-
Wilson, D.J.1
Gabriel, E.2
Leatherbarrow, A.J.3
Cheesbrough, J.4
Gee, S.5
Bolton, E.6
Fox, A.7
Hart, C.A.8
Diggle, P.J.9
Fearnhead, P.10
|