-
1
-
-
32444446240
-
Gene regulatory networks and the evolution of animal body plans
-
Davidson EH, Erwin DH, (2006) Gene regulatory networks and the evolution of animal body plans. Science 311: 796-800.
-
(2006)
Science
, vol.311
, pp. 796-800
-
-
Davidson, E.H.1
Erwin, D.H.2
-
2
-
-
18144408736
-
Cell fates as high-dimensional attractor states of a complex gene regulatory network
-
Huang S, Eichler G, Bar-Yam Y, Ingber DE, (2005) Cell fates as high-dimensional attractor states of a complex gene regulatory network. Phys Rev Lett 94: 128701.
-
(2005)
Phys Rev Lett
, vol.94
, pp. 128701
-
-
Huang, S.1
Eichler, G.2
Bar-Yam, Y.3
Ingber, D.E.4
-
3
-
-
66449090934
-
Reprogramming cell fates: reconciling rarity with robustness
-
Huang S, (2009) Reprogramming cell fates: reconciling rarity with robustness. Bioessays 31: 546-560.
-
(2009)
Bioessays
, vol.31
, pp. 546-560
-
-
Huang, S.1
-
5
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S, (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-547.
-
(2008)
Nature
, vol.453
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
6
-
-
65349097905
-
Stem cell states, fates, and the rules of attraction
-
Enver T, Pera M, Peterson C, Andrews PW, (2009) Stem cell states, fates, and the rules of attraction. Cell Stem Cell 4: 387-397.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 387-397
-
-
Enver, T.1
Pera, M.2
Peterson, C.3
Andrews, P.W.4
-
7
-
-
71449125977
-
Forcing cells to change lineages
-
Graf T, Enver T, (2009) Forcing cells to change lineages. Nature 462: 587-594.
-
(2009)
Nature
, vol.462
, pp. 587-594
-
-
Graf, T.1
Enver, T.2
-
9
-
-
0036566226
-
Differentiation plasticity of hematopoietic cells
-
Graf T, (2002) Differentiation plasticity of hematopoietic cells. Blood 99: 3089-3101.
-
(2002)
Blood
, vol.99
, pp. 3089-3101
-
-
Graf, T.1
-
10
-
-
37349040710
-
Induction of pluripotent stem cells from mouse fibroblasts by four transcription factors
-
Yamanaka S, (2008) Induction of pluripotent stem cells from mouse fibroblasts by four transcription factors. Cell Prolif 41 (Suppl 1): 51-56.
-
(2008)
Cell Prolif
, vol.41
, Issue.SUPPL. 1
, pp. 51-56
-
-
Yamanaka, S.1
-
11
-
-
33947693747
-
On the use of the word 'epigenetic'
-
Ptashne M, (2007) On the use of the word 'epigenetic'. Curr Biol 17: R233-236.
-
(2007)
Curr Biol
, vol.17
-
-
Ptashne, M.1
-
12
-
-
50849101033
-
How transcription factors program chromatin--lessons from studies of the regulation of myeloid-specific genes
-
Bonifer C, Hoogenkamp M, Krysinska H, Tagoh H, (2008) How transcription factors program chromatin--lessons from studies of the regulation of myeloid-specific genes. Semin Immunol 20: 257-263.
-
(2008)
Semin Immunol
, vol.20
, pp. 257-263
-
-
Bonifer, C.1
Hoogenkamp, M.2
Krysinska, H.3
Tagoh, H.4
-
13
-
-
11144277879
-
Crack in histone lysine methylation
-
Kubicek S, Jenuwein TA, (2004) Crack in histone lysine methylation. Cell 119: 903-906.
-
(2004)
Cell
, vol.119
, pp. 903-906
-
-
Kubicek, S.1
Jenuwein, T.A.2
-
14
-
-
0141811692
-
Boolean Dynamics with Random Couplings
-
In: Kaplan E, Marsden JE, Sreenivasan KR, editors, New York, Springer
-
Aldana M, Coppersmith S, Kadanoff LP, (2003) Boolean Dynamics with Random Couplings. In: Kaplan E, Marsden JE, Sreenivasan KR, editors. Perspectives and Problems in Nonlinear Science A celebratory volume in honor of Lawrence Sirovich New York Springer.
-
(2003)
Perspectives and Problems in Nonlinear Science A Celebratory Volume in Honor of Lawrence Sirovich
-
-
Aldana, M.1
Coppersmith, S.2
Kadanoff, L.P.3
-
15
-
-
58549093915
-
Developmental biology of the pancreas: a comprehensive review
-
Gittes GK, (2009) Developmental biology of the pancreas: a comprehensive review. Dev Biol 326: 4-35.
-
(2009)
Dev Biol
, vol.326
, pp. 4-35
-
-
Gittes, G.K.1
-
17
-
-
0348047628
-
Gene regulatory factors in pancreatic development
-
Jensen J, (2004) Gene regulatory factors in pancreatic development. Developmental Dynamics 229: 176-200.
-
(2004)
Developmental Dynamics
, vol.229
, pp. 176-200
-
-
Jensen, J.1
-
18
-
-
2442666735
-
Transcriptional networks controlling pancreatic development and beta cell function
-
Servitja JM, Ferrer J, (2004) Transcriptional networks controlling pancreatic development and beta cell function. Diabetologia 47: 597-613.
-
(2004)
Diabetologia
, vol.47
, pp. 597-613
-
-
Servitja, J.M.1
Ferrer, J.2
-
19
-
-
40949142371
-
Defining Pancreatic Endocrine Precursors and Their Descendants
-
White P, Lee, Lamounier R, Brestelli J, Kaestner K, (2008) Defining Pancreatic Endocrine Precursors and Their Descendants. Diabetes 57: 654-668.
-
(2008)
Diabetes
, vol.57
, pp. 654-668
-
-
White, P.1
Lee2
Lamounier, R.3
Brestelli, J.4
Kaestner, K.5
-
20
-
-
0034303586
-
Diversification of haematopoietic stem cells to specific lineages
-
Orkin SH, (2000) Diversification of haematopoietic stem cells to specific lineages. Nat Rev Genet 1: 57-64.
-
(2000)
Nat Rev Genet
, vol.1
, pp. 57-64
-
-
Orkin, S.H.1
-
21
-
-
33749467484
-
Mechanisms of neural stem cell fate determination: extracellular cues and intracellular programs
-
Abematsu M, Smith I, Nakashima K, (2006) Mechanisms of neural stem cell fate determination: extracellular cues and intracellular programs. Curr Stem Cell Res Ther 1: 267-277.
-
(2006)
Curr Stem Cell Res Ther
, vol.1
, pp. 267-277
-
-
Abematsu, M.1
Smith, I.2
Nakashima, K.3
-
22
-
-
22244487659
-
Genetic regulation of stem cell origins in the mouse embryo
-
Ralston A, Rossant J, (2005) Genetic regulation of stem cell origins in the mouse embryo. Clin Genet 68: 106-112.
-
(2005)
Clin Genet
, vol.68
, pp. 106-112
-
-
Ralston, A.1
Rossant, J.2
-
23
-
-
34248199004
-
Bifurcation dynamics of cell fate decision in bipotent progenitor cells
-
Huang S, Guo YP, May G, Enver T, (2007) Bifurcation dynamics of cell fate decision in bipotent progenitor cells. Dev Biol 305: 695-713.
-
(2007)
Dev Biol
, vol.305
, pp. 695-713
-
-
Huang, S.1
Guo, Y.P.2
May, G.3
Enver, T.4
-
24
-
-
53349178722
-
In vivo reprogramming of adult pancreatic exocrine cells to beta-cells
-
Zhou Q, Brown J, Kanarek A, Rajagopal J, Melton DA, (2008) In vivo reprogramming of adult pancreatic exocrine cells to beta-cells. Nature.
-
(2008)
Nature
-
-
Zhou, Q.1
Brown, J.2
Kanarek, A.3
Rajagopal, J.4
Melton, D.A.5
-
25
-
-
68149162957
-
The ectopic expression of Pax4 in the mouse pancreas converts progenitor cells into alpha and subsequently beta cells
-
Collombat P, Xu X, Ravassard P, Sosa-Pineda B, Dussaud S, et al. (2009) The ectopic expression of Pax4 in the mouse pancreas converts progenitor cells into alpha and subsequently beta cells. Cell 138: 449-462.
-
(2009)
Cell
, vol.138
, pp. 449-462
-
-
Collombat, P.1
Xu, X.2
Ravassard, P.3
Sosa-Pineda, B.4
Dussaud, S.5
-
26
-
-
14244266611
-
Minireview: transcriptional regulation in pancreatic development
-
Habener J, Kemp D, Thomas M, (2005) Minireview: transcriptional regulation in pancreatic development. Endocrinology 146: 1025-1034.
-
(2005)
Endocrinology
, vol.146
, pp. 1025-1034
-
-
Habener, J.1
Kemp, D.2
Thomas, M.3
-
28
-
-
57349112286
-
Generation and Regeneration of Cells of the Liver and Pancreas
-
Zaret K, Grompe M, (2008) Generation and Regeneration of Cells of the Liver and Pancreas. Science 322: 1490-1494.
-
(2008)
Science
, vol.322
, pp. 1490-1494
-
-
Zaret, K.1
Grompe, M.2
-
29
-
-
55649104699
-
A computational model for understanding stem cell, trophectoderm and endoderm lineage determination
-
Chickarmane V, Peterson C, (2008) A computational model for understanding stem cell, trophectoderm and endoderm lineage determination. PLoS ONE 3: e3478.
-
(2008)
PLoS ONE
, vol.3
-
-
Chickarmane, V.1
Peterson, C.2
-
30
-
-
52649162487
-
Stochasticity and the molecular mechanisms of induced pluripotency
-
MacArthur BD, Please CP, Oreffo RO, (2008) Stochasticity and the molecular mechanisms of induced pluripotency. PLoS ONE 3: e3086.
-
(2008)
PLoS ONE
, vol.3
-
-
MacArthur, B.D.1
Please, C.P.2
Oreffo, R.O.3
-
31
-
-
70049108481
-
A model of sequential branching in hierarchical cell fate determination
-
Foster DV, Foster JG, Huang S, Kauffman SA, (2009) A model of sequential branching in hierarchical cell fate determination. J Theor Biol 260: 589-597.
-
(2009)
J Theor Biol
, vol.260
, pp. 589-597
-
-
Foster, D.V.1
Foster, J.G.2
Huang, S.3
Kauffman, S.A.4
-
32
-
-
77952914558
-
The "potential" landscape of genetic circuits imposes the arrow of time in stem cell differentiation
-
Wang J, Xu L, Wang EK, Huang S, (2010) The "potential" landscape of genetic circuits imposes the arrow of time in stem cell differentiation. Biophys J 99: 29-39.
-
(2010)
Biophys J
, vol.99
, pp. 29-39
-
-
Wang, J.1
Xu, L.2
Wang, E.K.3
Huang, S.4
-
33
-
-
41749107942
-
Stochasticity and cell fate
-
Losick R, Desplan C, (2008) Stochasticity and cell fate. Science 320: 65-68.
-
(2008)
Science
, vol.320
, pp. 65-68
-
-
Losick, R.1
Desplan, C.2
-
34
-
-
19244372001
-
Transcription Factor Hepatocyte Nuclear Factor 6 Regulates Pancreatic Endocrine Cell Differentiation and Controls Expression of the Proendocrine Gene ngn3
-
Jacquemin P, Durviaux S, Jensen J, Godfraind C, Gradwohl G, et al. (2000) Transcription Factor Hepatocyte Nuclear Factor 6 Regulates Pancreatic Endocrine Cell Differentiation and Controls Expression of the Proendocrine Gene ngn3. Mol Cell Biol 20: 4445-4454.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 4445-4454
-
-
Jacquemin, P.1
Durviaux, S.2
Jensen, J.3
Godfraind, C.4
Gradwohl, G.5
-
35
-
-
0002763112
-
Derived activities; their causation, biological significance, origin, and emancipation during evolution
-
Tinbergen N, (1952) Derived activities; their causation, biological significance, origin, and emancipation during evolution. Q Rev Biol 27: 1-32.
-
(1952)
Q Rev Biol
, vol.27
, pp. 1-32
-
-
Tinbergen, N.1
-
37
-
-
0029868156
-
PDX-1 is required for pancreatic outgrowth and differentiation of the rostral duodenum
-
Offield MF, Jetton TL, Labosky PA, Ray M, Stein RW, et al. (1996) PDX-1 is required for pancreatic outgrowth and differentiation of the rostral duodenum. Development 122: 983-995.
-
(1996)
Development
, vol.122
, pp. 983-995
-
-
Offield, M.F.1
Jetton, T.L.2
Labosky, P.A.3
Ray, M.4
Stein, R.W.5
-
38
-
-
33847650979
-
Robustness and evolvability in genetic regulatory networks
-
Aldana M, Balleza E, Kauffman S, Resendiz O, (2007) Robustness and evolvability in genetic regulatory networks. J Theor Biol 245: 433-448.
-
(2007)
J Theor Biol
, vol.245
, pp. 433-448
-
-
Aldana, M.1
Balleza, E.2
Kauffman, S.3
Resendiz, O.4
-
39
-
-
67549090310
-
A bistable genetic switch which does not require high co-operativity at the promoter: a two-timescale model for the PU.1-GATA-1 interaction
-
Bokes P, King JR, Loose M, (2009) A bistable genetic switch which does not require high co-operativity at the promoter: a two-timescale model for the PU.1-GATA-1 interaction. Math Med Biol 26: 117-132.
-
(2009)
Math Med Biol
, vol.26
, pp. 117-132
-
-
Bokes, P.1
King, J.R.2
Loose, M.3
-
40
-
-
0042383441
-
Robust development as a consequence of generated positional information
-
Furusawa C, Kaneko K, (2003) Robust development as a consequence of generated positional information. Journal of Theoretical Biology 224: 413-435.
-
(2003)
Journal of Theoretical Biology
, vol.224
, pp. 413-435
-
-
Furusawa, C.1
Kaneko, K.2
-
41
-
-
0033533157
-
Isologous diversification for robust development of cell society
-
Kaneko K, Yomo T, (1999) Isologous diversification for robust development of cell society. Journal of Theoretical Biology 199: 243-256.
-
(1999)
Journal of Theoretical Biology
, vol.199
, pp. 243-256
-
-
Kaneko, K.1
Yomo, T.2
-
42
-
-
47849106044
-
Regulative differentiation as bifurcation of interacting cell population
-
Nakajima A, Kaneko K, (2008) Regulative differentiation as bifurcation of interacting cell population. Journal of Theoretical Biology 253: 779-787.
-
(2008)
Journal of Theoretical Biology
, vol.253
, pp. 779-787
-
-
Nakajima, A.1
Kaneko, K.2
-
43
-
-
1142285280
-
Genetic network models and statistical properties of gene expression data in knock-out experiments
-
Serra R, Villani M, Semeria A, (2004) Genetic network models and statistical properties of gene expression data in knock-out experiments. Journal of Theoretical Biology 227: 149-157.
-
(2004)
Journal of Theoretical Biology
, vol.227
, pp. 149-157
-
-
Serra, R.1
Villani, M.2
Semeria, A.3
-
44
-
-
0142091542
-
Opposing actions of Arx and Pax4 in endocrine pancreas development
-
Collombat P, Mansouri A, Hecksher-Sorensen J, Serup P, Krull J, et al. (2003) Opposing actions of Arx and Pax4 in endocrine pancreas development. Genes & Development 17: 2591-2603.
-
(2003)
Genes & Development
, vol.17
, pp. 2591-2603
-
-
Collombat, P.1
Mansouri, A.2
Hecksher-Sorensen, J.3
Serup, P.4
Krull, J.5
-
45
-
-
0030914931
-
Pax6 is required for differentiation of glucagon-producing alpha-cells in mouse pancreas
-
St-Onge L, Sosa-Pineda B, Chowdhury K, Mansouri A, Gruss P, (1997) Pax6 is required for differentiation of glucagon-producing alpha-cells in mouse pancreas. Nature 387: 406-409.
-
(1997)
Nature
, vol.387
, pp. 406-409
-
-
St-Onge, L.1
Sosa-Pineda, B.2
Chowdhury, K.3
Mansouri, A.4
Gruss, P.5
-
47
-
-
33847402673
-
Pancreas and beta-cell development: from the actual to the possible
-
Murtaugh C, (2007) Pancreas and beta-cell development: from the actual to the possible. Development 134: 427-438.
-
(2007)
Development
, vol.134
, pp. 427-438
-
-
Murtaugh, C.1
-
48
-
-
0033984886
-
Independent development of pancreatic alpha- and beta-cells from neurogenin3-expressing precursors: a role for the notch pathway in repression of premature differentiation
-
Jensen J, Heller RS, Funder-Nielsen T, Pedersen EE, Lindsell C, et al. (2000) Independent development of pancreatic alpha- and beta-cells from neurogenin3-expressing precursors: a role for the notch pathway in repression of premature differentiation. Diabetes 49: 163-176.
-
(2000)
Diabetes
, vol.49
, pp. 163-176
-
-
Jensen, J.1
Heller, R.S.2
Funder-Nielsen, T.3
Pedersen, E.E.4
Lindsell, C.5
-
49
-
-
52749094369
-
Reduction of Ptf1a gene dosage causes pancreatic hypoplasia and diabetes in mice
-
Fukuda A, Kawaguchi Y, Furuyama K, Kodama S, Horiguchi M, et al. (2008) Reduction of Ptf1a gene dosage causes pancreatic hypoplasia and diabetes in mice. Diabetes 57: 2421-2431.
-
(2008)
Diabetes
, vol.57
, pp. 2421-2431
-
-
Fukuda, A.1
Kawaguchi, Y.2
Furuyama, K.3
Kodama, S.4
Horiguchi, M.5
-
50
-
-
0037076351
-
Identification of beta-cell-specific insulin gene transcription factor RIPE3b1 as mammalian MafA
-
Olbrot M, Rud J, Moss LG, Sharma A, (2002) Identification of beta-cell-specific insulin gene transcription factor RIPE3b1 as mammalian MafA. Proceedings of the National Academy of Sciences of the United States of America 99: 6737-6742.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 6737-6742
-
-
Olbrot, M.1
Rud, J.2
Moss, L.G.3
Sharma, A.4
-
52
-
-
20344368579
-
MafA is a key regulator of glucose-stimulated insulin secretion
-
Zhang C, Moriguchi T, Kajihara M, Esaki R, Harada A, et al. (2005) MafA is a key regulator of glucose-stimulated insulin secretion. Molecular and Cellular Biology 25: 4969-4976.
-
(2005)
Molecular and Cellular Biology
, vol.25
, pp. 4969-4976
-
-
Zhang, C.1
Moriguchi, T.2
Kajihara, M.3
Esaki, R.4
Harada, A.5
-
53
-
-
59149091124
-
Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility
-
Chickarmane V, Enver T, Peterson C, (2009) Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility. PLoS Comput Biol 5: e1000268.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Chickarmane, V.1
Enver, T.2
Peterson, C.3
-
54
-
-
33749350211
-
Transcriptional dynamics of the embryonic stem cell switch
-
Chickarmane V, Troein C, Nuber UA, Sauro HM, Peterson C, (2006) Transcriptional dynamics of the embryonic stem cell switch. PLoS Comput Biol 2: e123.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Chickarmane, V.1
Troein, C.2
Nuber, U.A.3
Sauro, H.M.4
Peterson, C.5
-
55
-
-
0029134903
-
Michaelis-Menten mechanism reconsidered: implications of fractal kinetics
-
Savageau MA, (1995) Michaelis-Menten mechanism reconsidered: implications of fractal kinetics. J Theor Biol 176: 115-124.
-
(1995)
J Theor Biol
, vol.176
, pp. 115-124
-
-
Savageau, M.A.1
-
56
-
-
0034850921
-
Genomics, complexity and drug discovery: insights from Boolean network models of cellular regulation
-
Huang S, (2001) Genomics, complexity and drug discovery: insights from Boolean network models of cellular regulation. Pharmacogenomics 2: 203-222.
-
(2001)
Pharmacogenomics
, vol.2
, pp. 203-222
-
-
Huang, S.1
-
57
-
-
0034644270
-
The segment polarity network is a robust developmental module
-
Dassow G, Meir E, Munro EM, Odell GM, (2000) The segment polarity network is a robust developmental module. Nature 406: 188-192.
-
(2000)
Nature
, vol.406
, pp. 188-192
-
-
Dassow, G.1
Meir, E.2
Munro, E.M.3
Odell, G.M.4
-
58
-
-
0035439412
-
An Algorithmic Introduction to Numerical Simulation of Stochastic Differential Equations
-
Higham DJ, (2001) An Algorithmic Introduction to Numerical Simulation of Stochastic Differential Equations. SIAM Review 43: 525-546.
-
(2001)
SIAM Review
, vol.43
, pp. 525-546
-
-
Higham, D.J.1
|