Association mapping for quality traits in soft winter wheat

Theoretical and Applied Genetics

Volumn 122, Issue 5, 2011, Pages 961-970

  Reif, Jochen C ^a   Gowda, Manje ^a   Maurer, Hans P ^a   Longin, C F H ^a   Korzun, Viktor ^b   Ebmeyer, Erhard ^b   Bothe, Reiner ^b   Pietsch, Christof ^b   Würschum, Tobias ^a  

^a UNIVERSITY OF HOHENHEIM   (Germany)

^b KWS LOCHOW GMBH ^*  (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ASSOCIATION MAPPING; BREAD WHEAT; END-USES; FAMILY STRUCTURE; GENETIC BASIS; GENOTYPIC VARIATIONS; KERNEL WEIGHT; LINEAR MIXED MODELS; MAIN EFFECT; MARKER-ASSISTED BREEDING; PRINCIPAL COORDINATE ANALYSIS; PROTEIN CONTENTS; SSR MARKERS; STARCH CONCENTRATION; TEST WEIGHT; WINTER WHEAT;

PLANTS (BOTANY);

STARCH;

ANALYSIS OF VARIANCE; ARTICLE; BREEDING; CHROMOSOME MAP; GENETIC EPISTASIS; GENETIC MARKER; GENETICS; GENOTYPE; PHENOTYPE; PLANT CHROMOSOME; PLANT GENOME; QUANTITATIVE TRAIT LOCUS; SEASON; WHEAT;

ANALYSIS OF VARIANCE; BREEDING; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; EPISTASIS, GENETIC; GENETIC MARKERS; GENOME, PLANT; GENOTYPE; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SEASONS; STARCH; TRITICUM;

TRITICUM AESTIVUM;

EID: 79952445325     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1502-7     Document Type: Article

References (53)

1. Bernardo R (1993) Estimation of coefficient of coancestry using molecular markers in maize. Theor Appl Genet 85: 1055-1062.
2. Blanco A, Bellomo MP, Lotti C, Maniglio T, Pasqualone A, Simeone R, Troccoli A, Di Fonzo N (1998) Genetic mapping of sedimentation volume across environments using recombinant inbred lines of durum wheat. Plant Breed 117: 413-417.
3. Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172: 1165-1177.
4. Breseghello F, Finney PL, Gaines C, Andrews L, Tanaka J, Penner G, Sorrells ME (2005) Genetic loci related to kernel quality differences between a soft and a hard wheat cultivar. Crop Sci 45: 1685-1695.
5. Campbell KG, Bergman CJ, Gualberto DG, Anderson JA, Giroux MJ, Hareland G, Fulcher RG, Sorrells ME, Finney PL (1999) Quantitative trait loci associated with kernel traits in a soft × hard wheat cross. Crop Sci 39: 1184-1195.
6. Carlborg O, Haley CS (2004) Epistasis: too often neglected in complex trait studies? Nat Rev Genet 5: 618-625.
7. Carrillo JM, Rousset M, Qualset CO, Kasard DD (1990) Use of recombinant inbred lines of wheat for the study association of high molecular-weight glutenin subunit alleles to quantitative traits 1. Grain yield and quality prediction tests. Theor Appl Genet 79: 321-330.
8. Cuthbert JL, Somers DJ, Brule-Babel AL, Brown PD, Crow GH (2008) Molecular mapping of quantitative trait loci for yield and yield components in spring wheat (Triticum aestivum L.). Theor Appl Genet 117: 595-608.
9. Galande AA, Tiwari R, Ammiraju JSS, Santra DK, Laga MD, Rao VS, Gupta VS, Misra BK, Nagarajan S, Ranjekar PK (2001) Genetic analysis of kernel hardness in bread wheat using PCR-based markers. Theor Appl Genet 103: 601-606.
10. Gilmour AR, Gogel BJ, Cullis BR, Thompson R (2006) ASReml User Guide Release 2. 0. VSN International, Hemel Hempstead.
11. Goldringer I, Brabant P, Gallais A (1997) Estimation of additive and epistatic genetic variances for agronomic traits in a population of doubled-haploid lines of wheat. Heredity 79: 60-71.
12. Gower JC (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53: 325-338.
13. Groos C, Robert N, Bervas E, Charmet G (2003) Genetic analysis of grain protein-content, grain yield, and thousand-kernel weight in bread wheat. Theor Appl Genet 106: 1032-1040.
14. Groos C, Bervas E, Charmet G (2004) Genetic analysis of grain protein content, grain hardness and dough rheology in a hard × hard bread wheat progeny. J Cereal Sci 40: 93-100.
15. Gupta PK, Langridge P, Mir RR (2010) Marker-assisted wheat breeding: present status and future possibilities. Mol Breed 26: 145-161.
16. Holm S (1979) A simple sequentially rejective multiple test procedure. Scand J Stat 6: 65-70.
17. Huang X-Q, Cloutier S, Lycar L, Radovanovic N, Humphreys DG, Noll JS, Somers DJ, Brown PD (2006) Molecular detection of QTLs for agronomic and quality traits in a double haploid population derived from two Canadian wheats (Triticum aestivium L.). Theor Appl Genet 113: 753-766.
18. Kolster P, van Eeuwijk FA, van Gelder WMJ (1991) Additive and epistatic effects of allelic variation at the high-molecular-weight glutenin subunit loci in determining the bread-making quality of breeding lines of wheat. Euphytica 55: 277-285.
19. Kuchel H, Langridge P, Mosionek L, Williams K, Jefferies SP (2006) The genetic control of milling yield, dough rheology and baking quality of wheat. Theor Appl Genet 112: 1487-1495.
20. Kulwal PL, Kumar N, Gaur A, Khurana P, Khurana JP, Tyagi AK, Balyan HS, Gupta PK (2005) Mapping of a major QTL for pre-harvest sprouting tolerance on chromosome 3A in bread wheat. Theor Appl Genet 111: 1052-1059.
21. Kunert A, Naz AA, Dedeck O, Pillen K, Leon J (2007) AB-QTL analysis in winter wheat: I. Synthetic hexaploid wheat (T. turgidum ssp. dicoccoides + T. tauschii) as a source of favorable alleles for milling and baking quality traits. Theor Appl Genet 115: 683-695.
22. Li Y, Song Y, Zhou R, Branlard G, Jia J (2009) Detection of QTLs for bread-making quality in wheat using a recombinant inbred line population. Plant Breed 128: 235-243.
23. Liang D, Tang J, Pena RJ, Singh R, He X, Shen X, Yao D, Xia X, He Z (2010) Characterization of CIMMYT bread wheats for high- and low-molecular weight glutenin subunits and other quality-related genes with SDS-PAGE, RP-HPLC and molecular markers. Euphytica 172: 235-250.
24. Lynch M (1988) Estimation of relatedness by DNA fingerprinting. Mol Biol Evol 5: 584-599.
25. Ma W, Appels R, Bekes F, Larroque O, Morell MK, Gale KR (2005) Genetic characterization of dough rheological properties in a wheat doubled haploid population: additive genetic effects and epistatic interactions. Theor Appl Genet 111: 410-422.
26. Mann G, Diffey S, Cullis B, Azanza F, Martin D, Kelly A, McIntyre L, Schmidt A, Ma W, Nath Z, Kutty I, Leyne PE, Rampling L, Quail KJ, Morell MK (2009) Genetic control of wheat quality: interactions between chromosomal regions determining protein content and composition, dough rheology, and sponge and dough baking properties. Theor Appl Genet 118: 1519-1537.
27. McCartney CA, Somers DJ, Lukow O, Ames N, Noll J, Cloutier S, Humphreys DG, McCallum BD (2006) QTL analysis of quality traits in the spring wheat cross RL4452 x AC Domain. Plant Breed 125: 565-575.
28. Melchinger AE, Utz HF, Schön CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149: 383-403.
29. Miedaner T, Würschum T, Maurer HP, Korzun V, Ebmeyer E, Reif JC (2010) Association mapping for Fusarium head blight resistance in soft European winter wheat. Mol Breed (in press).
30. Neumann K, Kobiljski B, Denčić S, Varshney RK, Börner A (2010) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Mol Breed. doi: 10. 1007/s11032-010-9411-7.
31. Patil RM, Oak MD, Tamhankar SA, Rao VS (2009) Molecular mapping of QTLs for gluten strength as measured by sedimentation volume and mixograph in durum wheat (Triticum turgidum L. ssp. durum). J Cereal Sci 49: 378-386.
32. Prasad M, Kumar N, Kulwal P, Röder M, Balyan H, Dhaliwal H, Gupta P (2003) QTL analysis for grain protein content using SSR markers and validation studies using NILs in bread wheat. Theor Appl Genet 99: 341-345.
33. Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909.
34. Reif JC, Hallauer AR, Melchinger AE (2005) Heterosis and heterotic patterns in maize. Maydica 50: 215-223.
35. Reif JC, Maurer HP, Korzun V, Ebmeyer E, Miedaner T, Würschum T (2010) Genetic architecture of grain yield and heading time in soft winter wheat (in review).
36. Rousset M, Brabant P, Kota RS, Dubcovsky J, Dvorak J (2001) Use of recombinant substitution lines for gene mapping and QTL analysis of bread making quality in wheat. Euphytica 119: 81-87.
37. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109: 1105-1114.
38. Stich B, Mohring J, Piepho H-P, Heckenberger M, Buckler ES, Melchinger AE (2008) Comparison of mixed-model approaches for association mapping. Genetics 178: 1745-1754.
39. Sun X-Y, Wu K, Zhao Y, Kong F-M, Han G-Z, Jiang H-M, Huang X-J, Li R-J, Wang H-G, Li S-S (2009) QTL analysis of kernel shape and weight using recombinant inbred lines in wheat. Euphytica 165: 615-624.
40. Sun X, Marza F, Ma H, Carver BF, Bai G (2010) Mapping quantitative trait loci for quality factors in an inter-class cross of US and Chinese wheat. Theor Appl Genet 120: 1041-1051.
41. Suprayogi Y, Pozniak CJ, Clarke FR, Clarke JM, Knox RE, Singh AK (2009) Identification and validation of quantitative trait loci for grain protein content in adapted Canadian durum wheat populations. Theor Appl Genet 119: 437-448.
42. Tsilo TJ, Hareland GA, Simsek S, Chao S, Anderson JA (2010) Genome mapping of kernel characteristics in hard red spring wheat breeding lines. Theor Appl Genet 121: 717-730.
43. Utz HF, Melchinger AE, Schon CC (2000) Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154: 1839-1849.
44. Wright S (1978) Evolution and genetics of populations, variability within and among natural populations, vol 4. The University of Chicago Press, Chicago, p 91.
45. Würschum T, Maurer HP, Schulz B, Möhring J, Reif JC (2010) Genome-wide association mapping reveals epistasis and genetic interaction networks in sugar beet (in review).
46. Yang DL, Jing R, Chang XP, Li W (2007) Identification of quantitative trait loci and environmental interactions for accumulation and remobilization of water-soluble carbohydrates in wheat (Triticum aestivum L.) stems. Genetics 176: 571-584.
47. Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38: 203-208.
48. Yu J, Zhang Z, Zhu C, Tabanao DA, Pressoir G, Tuinstra MR, Kresovich S, Todhunter RJ, Buckler ES (2009) Simulation appraisal of the adequacy of number of background markers for relationship estimation in association mapping. Plant Genome 2: 63-77.
49. Zanetti S, Winzeler M, Feuillet C, Keller B, Messmer M (2001) Genetic analysis of bread-making quality in wheat and spelt. Plant Breed 120: 13-19.
50. Zhang Y, Wu Y, Xiao Y, Yan J, Zhang Y, Zhang Y, Ma C, Xia X, He Z (2009) QTL mapping for milling, gluten quality, and flour pasting properties in a recombinant inbred line population derived from a Chinese soft × hard wheat cross. Crop Pasture Sci 60: 587-597.
51. Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, Tang C, Toomajian C, Zheng H, Dean C, Marjoram P, Nordborg M (2007) An Arabidopsis example of association mapping in structured samples. PLoS Genet 3: 71-82.
52. Zhao L, Zhang K-P, Liu B, Deng Z, Qu H-L, Tian J-C (2010) A comparison of grain protein content QTLs and flour protein content QTLs across environments in cultivated wheat. Euphytica 174: 325-335.
53. Zhu C, Gore MA, Buckler ES, Yu J (2008) Status and prospects of association mapping in plants. Plant Genome 1: 5-20.