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Volumn 46, Issue 4, 2011, Pages 1074-1094

Using entropy of drug and protein graphs to predict FDA drug-target network: Theoretic-experimental study of MAO inhibitors and hemoglobin peptides from Fasciola hepatica

Author keywords

Drug Protein interaction complex networks; Fasciola hepatica proteome; MAO enzymes; Markov model; Multi target QSAR; Protein structure networks; Rasagiline derivatives

Indexed keywords

2,2,2 TRIFLUORO N (5,6 DIHYDRO 6 OXO 4H CYCLOPENTA[B]THIOPHEN 4 YL)ACETAMIDE; 2,2,2 TRIFLUORO N (CIS 5,6 DIHYDRO 6 HYDROXY 4H CYCLOPENTA[B]THIOPHEN 4 YL)ACETAMIDE; 2,2,2 TRIFLUORO N (TRANS 5,6 DIHYDRO 6 HYDROXY 4H CYCLOPENTA[B]THIOPHEN 4 YL)ACETAMIDE; 3 AMINO 3 (THIOPHEN 3 YL)PROPANOIC ACID; AMINE OXIDASE (FLAVIN CONTAINING) ISOENZYME A; AMINE OXIDASE (FLAVIN CONTAINING) ISOENZYME B; ANTIPARASITIC AGENT; ATORVASTATIN; CIS 4 [(DIPROP 2 YNYL)AMINO] 5,6 DIHYDRO 4H CYCLOPENTA[B]THIOPHEN 6 YL ACETATE; CIS 4 [(DIPROP 2 YNYL)AMINO] 5,6 DIHYDRO 4H CYCLOPENTA[B]THIOPHEN 6 YL BENZOATE; CIS 4 AMINO 5,6 DIHYDRO 4H CYCLOPENTA[B]THIOPHEN 6 OL; CIS 5,6 DIHYDRO 4 (PROP 2 YNYLAMINO) 4H CYCLOPENTA[B]THIOPHEN 6 OL; DIGOXIN; ETRETIN; HEMOGLOBIN; LEVAMISOLE; MEGESTROL; MOEXIPRIL; MONOAMINE OXIDASE INHIBITOR; PEPTIDE DERIVATIVE; PROTEOME; RASAGILINE DERIVATIVE; SERTRALINE; TRANS 4 [(DIPROP 2 YNYL)AMINO] 5,6 DIHYDRO 4H CYCLOPENTA[B]THIOPHEN 6 YL ACETATE; TRANS 4 [(DIPROP 2 YNYL)AMINO] 5,6 DIHYDRO 4H CYCLOPENTA[B]THIOPHEN 6 YL BENZOATE; TRANS 4 AMINO 5,6 DIHYDRO 4H CYCLOPENTA[B]THIOPHEN 6 OL; TRANS 5,6 DIHYDRO 4 (DIPROP 2 YNYLAMINO) 4H CYCLOPENTA[B]THIOPHEN 6 OL; TRANS 5,6 DIHYDRO 4 (PROP 2 YNYLAMINO) 4H CYCLOPENTA[B]THIOPHEN 6 OL; UNCLASSIFIED DRUG; UNINDEXED DRUG; VINBLASTINE;

EID: 79952282850     PISSN: 02235234     EISSN: 17683254     Source Type: Journal    
DOI: 10.1016/j.ejmech.2011.01.023     Document Type: Article
Times cited : (63)

References (95)
  • 1
    • 46249090791 scopus 로고    scopus 로고
    • Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
    • Y. Yamanishi, M. Araki, A. Gutteridge, W. Honda, and M. Kanehisa Prediction of drug-target interaction networks from the integration of chemical and genomic spaces Bioinformatics 24 2008 i232 240
    • (2008) Bioinformatics , vol.24 , pp. 232-240
    • Yamanishi, Y.1    Araki, M.2    Gutteridge, A.3    Honda, W.4    Kanehisa, M.5
  • 2
    • 76749148159 scopus 로고    scopus 로고
    • Collective motions and specific effectors: A statistical mechanics perspective on biological regulation
    • A. Giuliani Collective motions and specific effectors: a statistical mechanics perspective on biological regulation BMC Genomics 11 Suppl. 1 2010 S2
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 1 , pp. 2
    • Giuliani, A.1
  • 5
    • 31344478575 scopus 로고    scopus 로고
    • Virtual identification of essential proteins within the protein interaction network of yeast
    • DOI 10.1002/pmic.200500209
    • E. Estrada Virtual identification of essential proteins within the protein interaction network of yeast Proteomics 6 2006 35 40 (Pubitemid 43142931)
    • (2006) Proteomics , vol.6 , Issue.1 , pp. 35-40
    • Estrada, E.1
  • 6
    • 33748304130 scopus 로고    scopus 로고
    • Protein bipartivity and essentiality in the yeast protein-protein interaction network
    • DOI 10.1021/pr060106e
    • E. Estrada Protein bipartivity and essentiality in the yeast protein-protein interaction network J. Proteome Res. 5 2006 2177 2184 (Pubitemid 44330810)
    • (2006) Journal of Proteome Research , vol.5 , Issue.9 , pp. 2177-2184
    • Estrada, E.1
  • 7
    • 0036013593 scopus 로고    scopus 로고
    • Statistical mechanics of complex networks
    • A. Réka, and A.-L. Barabasi Statistical mechanics of complex networks Rev. Mod. Phys. 74 2002 47 97
    • (2002) Rev. Mod. Phys. , vol.74 , pp. 47-97
    • Réka, A.1    Barabasi, A.-L.2
  • 8
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • DOI 10.1038/nrg1272
    • A.L. Barabasi, and Z.N. Oltvai Network biology: understanding the cell's functional organization Nat. Rev. Genet. 5 2004 101 113 (Pubitemid 38160277)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 9
    • 34547146985 scopus 로고    scopus 로고
    • Network medicine-from obesity to the "diseasome"
    • A.L. Barabasi Network medicine-from obesity to the "diseasome" N. Engl. J. Med. 357 2007 404 407
    • (2007) N. Engl. J. Med. , vol.357 , pp. 404-407
    • Barabasi, A.L.1
  • 10
    • 34447254270 scopus 로고    scopus 로고
    • Medicinal chemistry and bioinformatics - Current trends in drugs discovery with networks topological indices
    • H. González-Díaz, S. Vilar, L. Santana, and E. Uriarte Medicinal chemistry and bioinformatics - current trends in drugs discovery with networks topological indices Curr. Top. Med. Chem. 7 2007 1025 1039
    • (2007) Curr. Top. Med. Chem. , vol.7 , pp. 1025-1039
    • González-Díaz, H.1    Vilar, S.2    Santana, L.3    Uriarte, E.4
  • 11
    • 72449143779 scopus 로고    scopus 로고
    • Proteins as networks: A mesoscopic approach using haemoglobin molecule as case study
    • A. Giuliani, L. Di Paola, and R. Setola Proteins as networks: a mesoscopic approach using haemoglobin molecule as case study Curr. Proteomics 6 2009 235 245
    • (2009) Curr. Proteomics , vol.6 , pp. 235-245
    • Giuliani, A.1    Di Paola, L.2    Setola, R.3
  • 13
    • 47749130443 scopus 로고    scopus 로고
    • Implications from a network-based topological analysis of ubiquitin unfolding simulations
    • A. Krishnan, A. Giuliani, J.P. Zbilut, and M. Tomita Implications from a network-based topological analysis of ubiquitin unfolding simulations PLoS ONE 3 2008 e2149
    • (2008) PLoS ONE , vol.3 , pp. 2149
    • Krishnan, A.1    Giuliani, A.2    Zbilut, J.P.3    Tomita, M.4
  • 14
    • 34248532344 scopus 로고    scopus 로고
    • Essentiality is an emergent property of metabolic network wiring
    • DOI 10.1016/j.febslet.2007.04.067, PII S0014579307004632
    • M.C. Palumbo, A. Colosimo, A. Giuliani, and L. Farina Essentiality is an emergent property of metabolic network wiring FEBS Lett. 581 2007 2485 2489 (Pubitemid 46764712)
    • (2007) FEBS Letters , vol.581 , Issue.13 , pp. 2485-2489
    • Palumbo, M.C.1    Colosimo, A.2    Giuliani, A.3    Farina, L.4
  • 15
    • 35649026449 scopus 로고    scopus 로고
    • Network scaling invariants help to elucidate basic topological principles of proteins
    • DOI 10.1021/pr070162v
    • A. Krishnan, A. Giuliani, J.P. Zbilut, and M. Tomita Network scaling invariants help to elucidate basic topological principles of proteins J. Proteome Res. 6 2007 3924 3934 (Pubitemid 350032556)
    • (2007) Journal of Proteome Research , vol.6 , Issue.10 , pp. 3924-3934
    • Krishnan, A.1    Giuliani, A.2    Zbilut, J.P.3    Tomita, M.4
  • 16
    • 38349055557 scopus 로고    scopus 로고
    • Indeterminacy of reverse engineering of gene regulatory networks: The curse of gene elasticity
    • A. Krishnan, A. Giuliani, and M. Tomita Indeterminacy of reverse engineering of gene regulatory networks: the curse of gene elasticity PLoS ONE 2 2007 e562
    • (2007) PLoS ONE , vol.2 , pp. 562
    • Krishnan, A.1    Giuliani, A.2    Tomita, M.3
  • 17
    • 32144438837 scopus 로고    scopus 로고
    • Metabolic pathways variability and sequence/networks comparisons
    • K. Tun, P.K. Dhar, M.C. Palumbo, and A. Giuliani Metabolic pathways variability and sequence/networks comparisons BMC Bioinf. 7 2006 24
    • (2006) BMC Bioinf. , vol.7 , pp. 24
    • Tun, K.1    Dhar, P.K.2    Palumbo, M.C.3    Giuliani, A.4
  • 18
    • 72449171166 scopus 로고    scopus 로고
    • Study of parasitic infections, cancer, and other diseases with mass-spectrometry and quantitative proteome-disease relationships
    • L.G. Pérez-Montoto, F. Prado-Prado, F.M. Ubeira, and H. González-Díaz Study of parasitic infections, cancer, and other diseases with mass-spectrometry and quantitative proteome-disease relationships Curr. Proteomics 6 2009 246 261
    • (2009) Curr. Proteomics , vol.6 , pp. 246-261
    • Pérez-Montoto, L.G.1    Prado-Prado, F.2    Ubeira, F.M.3    González- Díaz, H.4
  • 20
    • 59149092067 scopus 로고    scopus 로고
    • Artificial neural networks from MATLAB in medicinal chemistry. Bayesian-regularized genetic neural networks (BRGNN): Application to the prediction of the antagonistic activity against human platelet thrombin receptor (PAR-1)
    • J. Caballero, and M. Fernandez Artificial neural networks from MATLAB in medicinal chemistry. Bayesian-regularized genetic neural networks (BRGNN): application to the prediction of the antagonistic activity against human platelet thrombin receptor (PAR-1) Curr. Top. Med. Chem. 8 2008 1580 1605
    • (2008) Curr. Top. Med. Chem. , vol.8 , pp. 1580-1605
    • Caballero, J.1    Fernandez, M.2
  • 21
    • 34248549553 scopus 로고    scopus 로고
    • Amino acid sequence autocorrelation vectors and Bayesian-regularized genetic neural networks for modeling protein conformational stability: Gene V protein mutants
    • DOI 10.1002/prot.21349
    • L. Fernández, J. Caballero, J.I. Abreu, and M. Fernández Aminoacid sequence autocorrelation vectors and Bayesian-regularized genetic neural networks for modeling protein conformational stability: gene v protein mutants Proteins 67 2007 834 852 (Pubitemid 46753933)
    • (2007) Proteins: Structure, Function and Genetics , vol.67 , Issue.4 , pp. 834-852
    • Fernandez, L.1    Caballero, J.2    Abreu, J.I.3    Fernandez, M.4
  • 22
    • 35449002457 scopus 로고    scopus 로고
    • Protein radial distribution function (P-RDF) and Bayesian-Regularized Genetic Neural Networks for modeling protein conformational stability: Chymotrypsin inhibitor 2 mutants
    • DOI 10.1016/j.jmgm.2007.04.011, PII S1093326307000848
    • M. Fernández, J. Caballero, L. Fernández, J.I. Abreu, and M. Garriga Protein radial distribution function (P-RDF) and Bayesian-regularized genetic neural networks for modeling protein conformational stability: chymotrypsin inhibitor 2 mutants J. Mol. Graph. Model. 26 2007 748 759 (Pubitemid 47628843)
    • (2007) Journal of Molecular Graphics and Modelling , vol.26 , Issue.4 , pp. 748-759
    • Fernandez, M.1    Caballero, J.2    Fernandez, L.3    Abreu, J.I.4    Garriga, M.5
  • 23
    • 37349058879 scopus 로고    scopus 로고
    • Classification of conformational stability of protein mutants from 3D pseudo-folding graph representation of protein sequences using support vector machines
    • DOI 10.1002/prot.21524
    • M. Fernández, F. Caballero, L. Fernández, J.I. Abreu, and G. Acosta Classification of conformational stability of protein mutants from 3D pseudo-folding graph representation of protein sequences using support vector machines Proteins 70 2008 167 175 (Pubitemid 350293458)
    • (2008) Proteins: Structure, Function and Genetics , vol.70 , Issue.1 , pp. 167-175
    • Fernandez, M.1    Caballero, J.2    Fernandez, L.3    Abreu, J.I.4    Acosta, G.5
  • 24
  • 25
    • 0344551134 scopus 로고    scopus 로고
    • Protein Aggregation/Folding: The Role of Deterministic Singularities of Sequence Hydrophobicity as Determined by Nonlinear Signal Analysis of Acylphosphatase and Aβ(1-40)
    • J.P. Zbilut, A. Colosimo, F. Conti, M. Colafranceschi, C. Manetti, M. Valerio, C.L. Webber Jr., and A. Giuliani Protein aggregation/folding: the role of deterministic singularities of sequence hydrophobicity as determined by nonlinear signal analysis of acylphosphatase and abeta(1-40) Biophys. J. 85 2003 3544 3557 (Pubitemid 37490270)
    • (2003) Biophysical Journal , vol.85 , Issue.6 , pp. 3544-3557
    • Zbilut, J.P.1    Colosimo, A.2    Conti, F.3    Colafranceschi, M.4    Manetti, C.5    Valerio, M.6    Webber Jr., C.L.7    Giuliani, A.8
  • 27
    • 67249095008 scopus 로고    scopus 로고
    • Alignment-free prediction of a drug-target complex network based on parameters of drug connectivity and protein sequence of receptors
    • D. Viña, E. Uriarte, F. Orallo, and H. Gonzalez-Diaz Alignment-free prediction of a drug-target complex network based on parameters of drug connectivity and protein sequence of receptors Mol. Pharmacol. 6 2009 825 835
    • (2009) Mol. Pharmacol. , vol.6 , pp. 825-835
    • Viña, D.1    Uriarte, E.2    Orallo, F.3    Gonzalez-Diaz, H.4
  • 29
    • 59149084486 scopus 로고    scopus 로고
    • Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach
    • H. Gonzalez-Diaz, F. Prado-Prado, and F.M. Ubeira Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach Curr. Top. Med. Chem. 8 2008 1676 1690
    • (2008) Curr. Top. Med. Chem. , vol.8 , pp. 1676-1690
    • Gonzalez-Diaz, H.1    Prado-Prado, F.2    Ubeira, F.M.3
  • 30
    • 65249098338 scopus 로고    scopus 로고
    • Alignment-free prediction of polygalacturonases with pseudofolding topological indices: Experimental isolation from coffea arabica and prediction of a new sequence
    • G. Aguero-Chapin, J. Varona-Santos, G.A. de la Riva, A. Antunes, T. Gonzalez-Villa, E. Uriarte, and H. Gonzalez-Diaz Alignment-free prediction of polygalacturonases with pseudofolding topological indices: experimental isolation from coffea arabica and prediction of a new sequence J. Proteome Res. 8 2009 2122 2128
    • (2009) J. Proteome Res. , vol.8 , pp. 2122-2128
    • Aguero-Chapin, G.1    Varona-Santos, J.2    De La Riva, G.A.3    Antunes, A.4    Gonzalez-Villa, T.5    Uriarte, E.6    Gonzalez-Diaz, H.7
  • 32
    • 33847420914 scopus 로고    scopus 로고
    • A model for the recognition of protein kinases based on the entropy of 3D van der waals interactions
    • DOI 10.1021/pr060493s
    • H. Gonzalez-Diaz, L. Saiz-Urra, R. Molina, L. Santana, and E. Uriarte A model for the recognition of protein kinases based on the entropy of 3D van der Waals interactions J. Proteome Res. 6 2007 904 908 (Pubitemid 46340196)
    • (2007) Journal of Proteome Research , vol.6 , Issue.2 , pp. 904-908
    • Gonzalez-Diaz, H.1    Saiz-Urra, L.2    Molina, R.3    Santana, L.4    Uriarte, E.5
  • 34
    • 76149112596 scopus 로고    scopus 로고
    • Trypano-PPI: A web server for prediction of unique targets in trypanosome proteome by using electrostatic parameters of protein-protein interactions
    • 10.1021/pr900827b
    • Y. Rodriguez-Soca, C.R. Munteanu, F.J. Prado-Prado, J. Dorado, A. Pazos Sierra, and H. Gonzalez-Diaz Trypano-PPI: a web server for prediction of unique targets in trypanosome proteome by using electrostatic parameters of protein-protein interactions J. Proteome Res. 2009 10.1021/pr900827b
    • (2009) J. Proteome Res.
    • Rodriguez-Soca, Y.1    Munteanu, C.R.2    Prado-Prado, F.J.3    Dorado, J.4    Pazos Sierra, A.5    Gonzalez-Diaz, H.6
  • 36
    • 56249083925 scopus 로고    scopus 로고
    • Quantitative structure-activity relationship and complex network approach to monoamine oxidase A and B inhibitors
    • L. Santana, H. Gonzalez-Diaz, E. Quezada, E. Uriarte, M. Yanez, D. Vina, and F. Orallo Quantitative structure-activity relationship and complex network approach to monoamine oxidase A and B inhibitors J. Med. Chem. 51 2008 6740 6751
    • (2008) J. Med. Chem. , vol.51 , pp. 6740-6751
    • Santana, L.1    Gonzalez-Diaz, H.2    Quezada, E.3    Uriarte, E.4    Yanez, M.5    Vina, D.6    Orallo, F.7
  • 37
    • 32344446616 scopus 로고    scopus 로고
    • A QSAR model for in silico screening of MAO-A inhibitors. Prediction, synthesis, and biological assay of novel coumarins
    • DOI 10.1021/jm0509849
    • L. Santana, E. Uriarte, H. González-Díaz, G. Zagotto, R. Soto-Otero, and E. Mendez-Alvarez A QSAR model for in silico screening of MAO-A inhibitors. Prediction, synthesis, and biological assay of novel coumarins J. Med. Chem. 49 2006 1149 1156 (Pubitemid 43221661)
    • (2006) Journal of Medicinal Chemistry , vol.49 , Issue.3 , pp. 1149-1156
    • Santana, L.1    Uriarte, E.2    Gonzalez-Diaz, H.3    Zagotto, G.4    Soto-Otero, R.5    Mendez-Alvarez, E.6
  • 38
    • 34547347534 scopus 로고    scopus 로고
    • Computational chemistry comparison of stable/nonstable protein mutants classification models based on 3d and topological indices
    • DOI 10.1002/jcc.20700
    • H. González-Díaz, Y. Pérez-Castillo, G. Podda, and E. Uriarte Computational chemistry comparison of stable/nonstable protein mutants classification models based on 3D and topological indices J. Comput. Chem. 28 2007 1990 1995 (Pubitemid 47153595)
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.12 , pp. 1990-1995
    • Gonzalez-Diaz, H.1    Perez-Castillo, Y.2    Podda, G.3    Uriarte, E.4
  • 39
    • 33947722304 scopus 로고    scopus 로고
    • Computational chemistry approach to protein kinase recognition using 3D stochastic van der Waals spectral moments
    • DOI 10.1002/jcc.20649
    • H. Gonzalez-Diaz, L. Saiz-Urra, R. Molina, Y. Gonzalez-Diaz, and A. Sanchez-Gonzalez Computational chemistry approach to protein kinase recognition using 3D stochastic van der Waals spectral moments J. Comput. Chem. 28 2007 1042 1048 (Pubitemid 46506707)
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.6 , pp. 1042-1048
    • Gonzalez-Diaz, H.1    Saiz-Urra, L.2    Molina, R.3    Gonzalez-Diaz, Y.4    Sanchez-Gonzalez, A.5
  • 41
    • 56149097042 scopus 로고    scopus 로고
    • Stochastic molecular descriptors for polymers. 4. Study of complex mixtures with topological indices of mass spectra spiral and star networks: The blood proteome case
    • M. Cruz-Monteagudo, C.R. Munteanu, F. Borges, M.N.D.S. Cordeiro, E. Uriarte, K.-C. Chou, and H. González-Díaz Stochastic molecular descriptors for polymers. 4. Study of complex mixtures with topological indices of mass spectra spiral and star networks: the blood proteome case Polymer 49 2008 5575 5587
    • (2008) Polymer , vol.49 , pp. 5575-5587
    • Cruz-Monteagudo, M.1    Munteanu, C.R.2    Borges, F.3    Cordeiro, M.N.D.S.4    Uriarte, E.5    Chou, K.-C.6    González-Díaz, H.7
  • 42
    • 49149091399 scopus 로고    scopus 로고
    • HP-Lattice QSAR for dynein proteins: Experimental proteomics (2D-electrophoresis, mass spectrometry) and theoretic study of a Leishmania infantum sequence
    • M.A. Dea-Ayuela, Y. Perez-Castillo, A. Meneses-Marcel, F.M. Ubeira, F. Bolas-Fernandez, K.C. Chou, and H. Gonzalez-Diaz HP-Lattice QSAR for dynein proteins: experimental proteomics (2D-electrophoresis, mass spectrometry) and theoretic study of a Leishmania infantum sequence Bioorg. Med. Chem. 16 2008 7770 7776
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 7770-7776
    • Dea-Ayuela, M.A.1    Perez-Castillo, Y.2    Meneses-Marcel, A.3    Ubeira, F.M.4    Bolas-Fernandez, F.5    Chou, K.C.6    Gonzalez-Diaz, H.7
  • 43
    • 41549153907 scopus 로고    scopus 로고
    • MMM-QSAR recognition of ribonucleases without alignment: Comparison with an HMM model and isolation from Schizosaccharomyces pombe, prediction, and experimental assay of a new sequence
    • DOI 10.1021/ci7003225
    • G. Aguero-Chapin, H. Gonzalez-Diaz, G. de la Riva, E. Rodriguez, A. Sanchez-Rodriguez, G. Podda, and R.I. Vazquez-Padron MMM-QSAR recognition of ribonucleases without alignment: comparison with an HMM model and isolation from Schizosaccharomyces pombe, prediction, and experimental assay of a new sequence J. Chem. Inf. Model. 48 2008 434 448 (Pubitemid 351473045)
    • (2008) Journal of Chemical Information and Modeling , vol.48 , Issue.2 , pp. 434-448
    • Aguero-Chapin, G.1    Gonzalez-Diaz, H.2    De La Riva, G.3    Rodriguez, E.4    Sanchez-Rodriguez, A.5    Podda, G.6    Vazquez-Padron, R.I.7
  • 44
    • 44649104406 scopus 로고    scopus 로고
    • Using spectral moments of spiral networks based on PSA/mass spectra outcomes to derive quantitative proteome-disease relationships (QPDRs) and predicting prostate cancer
    • G. Ferino, H. Gonzalez-Diaz, G. Delogu, G. Podda, and E. Uriarte Using spectral moments of spiral networks based on PSA/mass spectra outcomes to derive quantitative proteome-disease relationships (QPDRs) and predicting prostate cancer Biochem. Biophys. Res. Commun. 372 2008 320 325
    • (2008) Biochem. Biophys. Res. Commun. , vol.372 , pp. 320-325
    • Ferino, G.1    Gonzalez-Diaz, H.2    Delogu, G.3    Podda, G.4    Uriarte, E.5
  • 46
    • 23644443075 scopus 로고    scopus 로고
    • Recognition of stable protein mutants with 3D stochastic average electrostatic potentials
    • DOI 10.1016/j.febslet.2005.06.065, PII S001457930500815X
    • H. Gonzalez-Diaz, R. Molina, and E. Uriarte Recognition of stable protein mutants with 3D stochastic average electrostatic potentials FEBS Lett. 579 2005 4297 4301 (Pubitemid 41116355)
    • (2005) FEBS Letters , vol.579 , Issue.20 , pp. 4297-4301
    • Gonzalez-Diaz, H.1    Molina, R.2    Uriarte, E.3
  • 47
    • 67650113056 scopus 로고    scopus 로고
    • Computational chemistry study of 3D-structure-function relationships for enzymes based on Markov models for protein electrostatic, HINT, and van der Waals potentials
    • R. Concu, G. Podda, E. Uriarte, and H. Gonzalez-Diaz Computational chemistry study of 3D-structure-function relationships for enzymes based on Markov models for protein electrostatic, HINT, and van der Waals potentials J. Comput. Chem. 30 2009 1510 1520
    • (2009) J. Comput. Chem. , vol.30 , pp. 1510-1520
    • Concu, R.1    Podda, G.2    Uriarte, E.3    Gonzalez-Diaz, H.4
  • 51
    • 60849139412 scopus 로고    scopus 로고
    • Development and validation of a pharmacophore-based QSAR model for the prediction of CNS activity
    • R. Gozalbes, F. Barbosa, E. Nicolai, D. Horvath, and N. Froloff Development and validation of a pharmacophore-based QSAR model for the prediction of CNS activity ChemMedChem 4 2009 204 209
    • (2009) ChemMedChem , vol.4 , pp. 204-209
    • Gozalbes, R.1    Barbosa, F.2    Nicolai, E.3    Horvath, D.4    Froloff, N.5
  • 53
    • 0038512078 scopus 로고    scopus 로고
    • Classification of inhibitors of protein tyrosine phosphatase 1B using molecular structure based descriptors
    • S.J. Patankar, and P.C. Jurs Classification of inhibitors of protein tyrosine phosphatase 1B using molecular structure based descriptors J. Chem. Inf. Comput. Sci. 43 2003 885 899
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 885-899
    • Patankar, S.J.1    Jurs, P.C.2
  • 56
    • 33746674977 scopus 로고    scopus 로고
    • Exploration of biological network centralities with CentiBiN
    • B.H. Junker, D. Koschutzki, and F. Schreiber Exploration of biological network centralities with CentiBiN BMC Bioinf. 7 2006 219
    • (2006) BMC Bioinf. , vol.7 , pp. 219
    • Junker, B.H.1    Koschutzki, D.2    Schreiber, F.3
  • 59
    • 0027335950 scopus 로고
    • HyperChem(TM): A software package for computational chemistry and molecular modeling
    • M. Froimowitz HyperChem: a software package for computational chemistry and molecular modeling BioTechniques 14 1993 1010 1013 (Pubitemid 23166821)
    • (1993) BioTechniques , vol.14 , Issue.6 , pp. 1010-1013
    • Froimowitz, M.1
  • 60
    • 79952281243 scopus 로고    scopus 로고
    • I. Hypercube 2002 Hyperchem Inc Gainesville, FL, USA
    • I. Hypercube 2002 Hyperchem Inc Gainesville, FL, USA
  • 61
    • 0036137805 scopus 로고    scopus 로고
    • Exploratory studies of ab initio protein structure prediction: Multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model
    • DOI 10.1002/prot.10020
    • Y. Liu, and D.L. Beveridge Exploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model Proteins 46 2002 128 146 (Pubitemid 34033582)
    • (2002) Proteins: Structure, Function and Genetics , vol.46 , Issue.1 , pp. 128-146
    • Liu, Y.1    Beveridge, D.L.2
  • 62
    • 0141744852 scopus 로고    scopus 로고
    • Optimized serodiagnosis of sheep fascioliasis by fast-D protein liquid chromatography fractionation of Fasciola hepatica excretory-secretory antigens
    • DOI 10.1645/GE-74RI.1
    • M. Mezo, M. Gonzalez-Warleta, and F.M. Ubeira Optimized serodiagnosis of sheep fascioliasis by Fast-D protein liquid chromatography fractionation of Fasciola hepatica excretory-secretory antigens J. Parasitol. 89 2003 843 849 (Pubitemid 37151593)
    • (2003) Journal of Parasitology , vol.89 , Issue.4 , pp. 843-849
    • Mezo, M.1    Gonzalez-Warleta, M.2    Ubeira, F.M.3
  • 63
    • 1642303342 scopus 로고    scopus 로고
    • Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins
    • DOI 10.2174/0929867043455819
    • O. Ivanciuc, N. Oezguen, V.S. Mathura, C.H. Schein, Y. Xu, and W. Braun Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins Curr. Med. Chem. 11 2004 583 593 (Pubitemid 38380038)
    • (2004) Current Medicinal Chemistry , vol.11 , Issue.5 , pp. 583-593
    • Ivanciuc, O.1    Oezguen, N.2    Mathura, V.S.3    Schein, C.H.4    Xu, Y.5    Braun, W.6
  • 64
    • 27744566919 scopus 로고    scopus 로고
    • Common physical-chemical properties correlate with similar structure of the IgE epitopes of peanut allergens
    • DOI 10.1021/jf051148a
    • C.H. Schein, O. Ivanciuc, and W. Braun Common physical-chemical properties correlate with similar structure of the IgE epitopes of peanut allergens J. Agric. Food Chem. 53 2005 8752 8759 (Pubitemid 41608940)
    • (2005) Journal of Agricultural and Food Chemistry , vol.53 , Issue.22 , pp. 8752-8759
    • Schein, C.H.1    Ivanciuc, O.2    Braun, W.3
  • 66
    • 34147154787 scopus 로고    scopus 로고
    • Probing the anticancer activity of nucleoside analogues: A QSAR model approach using an internally consistent training set
    • DOI 10.1021/jm061445m
    • A.H. Morales, J.E. Rodríguez-Borges, X. García-Mera, F. Fernández, and M.N. Dias-Sueiro-Cordeiro Probing the anticancer activity of nucleoside analogs: a QSAR model approach using an internally consistent training set J. Med. Chem. 50 2007 1537 1545 (Pubitemid 46564375)
    • (2007) Journal of Medicinal Chemistry , vol.50 , Issue.7 , pp. 1537-1545
    • Helguera, A.M.1    Rodriguez-Borges, J.E.2    Garcia-Mera, X.3    Fernandez, F.4    Cordeiro, M.N.D.S.5
  • 67
    • 33646186011 scopus 로고    scopus 로고
    • Linear and nonlinear QSAR study of N-hydroxy-2-[(phenylsulfonyl)amino] acetamide derivatives as matrix metalloproteinase inhibitors
    • M. Fernandez, J. Caballero, and A. Tundidor-Camba Linear and nonlinear QSAR study of N-hydroxy-2-[(phenylsulfonyl)amino]acetamide derivatives as matrix metalloproteinase inhibitors Bioorg. Med. Chem. 14 2006 4137 4150
    • (2006) Bioorg. Med. Chem. , vol.14 , pp. 4137-4150
    • Fernandez, M.1    Caballero, J.2    Tundidor-Camba, A.3
  • 68
    • 30744458142 scopus 로고    scopus 로고
    • Linear and nonlinear modeling of antifungal activity of some heterocyclic ring derivatives using multiple linear regression and Bayesian-regularized neural networks
    • DOI 10.1007/s00894-005-0014-x
    • J. Caballero, and M. Fernandez Linear and nonlinear modeling of antifungal activity of some heterocyclic ring derivatives using multiple linear regression and Bayesian-regularized neural networks J. Mol. Model. 12 2006 168 181 (Pubitemid 43090583)
    • (2006) Journal of Molecular Modeling , vol.12 , Issue.2 , pp. 168-181
    • Caballero, J.1    Fernandez, M.2
  • 69
    • 0037133525 scopus 로고    scopus 로고
    • NMR structure of the second intracellular loop of the α2A adrenergic receptor: Evidence for a novel cytoplasmic helix
    • DOI 10.1021/bi015811+
    • D.A. Chung, E.R. Zuiderweg, C.B. Fowler, O.S. Soyer, H.I. Mosberg, and R.R. Neubig NMR structure of the second intracellular loop of the alpha 2A adrenergic receptor: evidence for a novel cytoplasmic helix Biochemistry 41 2002 3596 3604 (Pubitemid 34224671)
    • (2002) Biochemistry , vol.41 , Issue.11 , pp. 3596-3604
    • Chung, D.A.1    Zuiderweg, E.R.P.2    Fowler, C.B.3    Soyer, O.S.4    Mosberg, H.I.5    Neubig, R.R.6
  • 70
    • 2442456918 scopus 로고    scopus 로고
    • 2 adrenergic receptor: An NMR study
    • DOI 10.1016/j.bbamem.2004.01.012, PII S0005273604000458
    • M. Katragadda, M.W. Maciejewski, and P.L. Yeagle Structural studies of the putative helix 8 in the human beta(2) adrenergic receptor: an NMR study Biochim. Biophys. Acta 1663 2004 74 81 (Pubitemid 38625581)
    • (2004) Biochimica et Biophysica Acta - Biomembranes , vol.1663 , Issue.1-2 , pp. 74-81
    • Katragadda, M.1    MacIejewski, M.W.2    Yeagle, P.L.3
  • 71
    • 66149189210 scopus 로고    scopus 로고
    • G protein inactive and active forms investigated by simulation methods
    • K. Khafizov, G. Lattanzi, and P. Carloni G protein inactive and active forms investigated by simulation methods Proteins 75 2009 919 930
    • (2009) Proteins , vol.75 , pp. 919-930
    • Khafizov, K.1    Lattanzi, G.2    Carloni, P.3
  • 72
    • 33846075359 scopus 로고    scopus 로고
    • Metabolism of moexipril to moexiprilat: Determination of in vitro metabolism using HPLC-ES-MS
    • DOI 10.2174/157340607779317490
    • H. Kalasz, G. Petroianu, K. Tekes, I. Klebovich, K. Ludanyi, and Z. Gulyas Metabolism of moexipril to moexiprilat: determination of in vitro metabolism using HPLC-ES-MS Med. Chem. 3 2007 101 106 (Pubitemid 46062347)
    • (2007) Medicinal Chemistry , vol.3 , Issue.1 , pp. 101-106
    • Kalasz, H.1    Petroianu, G.2    Tekes, K.3    Klebovich, I.4    Ludanyi, K.5    Gulyas, Zs.6
  • 74
    • 17144372987 scopus 로고    scopus 로고
    • Regression of left ventricular hypertrophy with moexipril, an angiotensin-converting enzyme inhibitor, in hypertensive patients
    • DOI 10.1097/00045391-200501000-00002
    • F. Sayegh, J. Topouchian, M. Hlawaty, M. Olzewska, and R. Asmar Regression of left ventricular hypertrophy with moexipril, an angiotensin-converting enzyme inhibitor, in hypertensive patients Am. J. Therapeut. 12 2005 3 8 (Pubitemid 40516041)
    • (2005) American Journal of Therapeutics , vol.12 , Issue.1 , pp. 3-8
    • Sayegh, F.1    Topouchian, J.2    Hlawaty, M.3    Olzewska, M.4    Asmar, R.5
  • 75
    • 66449109839 scopus 로고    scopus 로고
    • Carbonic anhydrase inhibitors. Inhibition and homology modeling studies of the fungal beta-carbonic anhydrase from Candida albicans with sulfonamides
    • A. Innocenti, R.A. Hall, C. Schlicker, A. Scozzafava, C. Steegborn, F.A. Muhlschlegel, and C.T. Supuran Carbonic anhydrase inhibitors. Inhibition and homology modeling studies of the fungal beta-carbonic anhydrase from Candida albicans with sulfonamides Bioorg. Med. Chem. 17 2009 4503 4509
    • (2009) Bioorg. Med. Chem. , vol.17 , pp. 4503-4509
    • Innocenti, A.1    Hall, R.A.2    Schlicker, C.3    Scozzafava, A.4    Steegborn, C.5    Muhlschlegel, F.A.6    Supuran, C.T.7
  • 76
    • 58949083662 scopus 로고    scopus 로고
    • Carbonic anhydrase inhibitors. Comparison of chlorthalidone, indapamide, trichloromethiazide, and furosemide X-ray crystal structures in adducts with isozyme II, when several water molecules make the difference
    • C. Temperini, A. Cecchi, A. Scozzafava, and C.T. Supuran Carbonic anhydrase inhibitors. Comparison of chlorthalidone, indapamide, trichloromethiazide, and furosemide X-ray crystal structures in adducts with isozyme II, when several water molecules make the difference Bioorg. Med. Chem. 17 2009 1214 1221
    • (2009) Bioorg. Med. Chem. , vol.17 , pp. 1214-1221
    • Temperini, C.1    Cecchi, A.2    Scozzafava, A.3    Supuran, C.T.4
  • 84
    • 0037414497 scopus 로고    scopus 로고
    • The first radical method for the introduction of an ethynyl group using a silicon tether and its application to the synthesis of 2′-deoxy-2′- C-ethynylnucleosides
    • DOI 10.1021/jo0206667
    • M. Sukeda, S. Ichikawa, A. Matsuda, and S. Shuto The first radical method for the introduction of an ethynyl group using a silicon tether and its application to the synthesis of 2′-deoxy-2′-C-ethynylnucleosides J. Org. Chem. 68 2003 3465 3475 (Pubitemid 36520365)
    • (2003) Journal of Organic Chemistry , vol.68 , Issue.9 , pp. 3465-3475
    • Sukeda, M.1    Ichikawa, S.2    Matsuda, A.3    Shuto, S.4
  • 85
    • 33748593352 scopus 로고    scopus 로고
    • The decision-making process of us food and drug administration advisory committees on switches from prescription to over-the-counter status: A comparative case study
    • DOI 10.1016/j.clinthera.2006.08.007, PII S0149291806001871
    • N.T. Nguyen, D.M. Cook, and L.A. Bero The decision-making process of US food and drug administration advisory committees on switches from prescription to over-the-counter status: a comparative case study Clin. Ther. 28 2006 1231 1243 (Pubitemid 44376808)
    • (2006) Clinical Therapeutics , vol.28 , Issue.8 , pp. 1231-1243
    • Nguyen, N.T.1    Cook, D.M.2    Bero, L.A.3
  • 86
    • 59149103525 scopus 로고    scopus 로고
    • Current topics on software use in medicinal chemistry: Intellectual property, taxes, and regulatory issues
    • A. Duardo-Sanchez, G. Patlewicz, and A. Lopez-Diaz Current topics on software use in medicinal chemistry: intellectual property, taxes, and regulatory issues Curr. Top. Med. Chem. 8 2008 1666 1675
    • (2008) Curr. Top. Med. Chem. , vol.8 , pp. 1666-1675
    • Duardo-Sanchez, A.1    Patlewicz, G.2    Lopez-Diaz, A.3
  • 87
    • 72449158079 scopus 로고    scopus 로고
    • QSAR models for proteins of parasitic organisms, plants and human guests: Theory, applications, legal protection, taxes, and regulatory issues
    • H. González-Díaz, F. Prado-Prado, L.G. Pérez- Montoto, A. Duardo-Sánchez, and A. López-Díaz QSAR models for proteins of parasitic organisms, plants and human guests: theory, applications, legal protection, taxes, and regulatory issues Curr. Proteomics 6 2009 214 227
    • (2009) Curr. Proteomics , vol.6 , pp. 214-227
    • González-Díaz, H.1    Prado-Prado, F.2    Pérez-Montoto, L.G.3    Duardo-Sánchez, A.4    López-Díaz, A.5
  • 88
    • 77953301845 scopus 로고    scopus 로고
    • Review of MARCH-INSIDE & complex networks prediction of drugs: ADMET, anti-parasite activity, metabolizing enzymes and cardiotoxicity proteome Biomarkers
    • H. González-Díaz, A. Duardo-Sanchez, F.M. Ubeira, F. Prado-Prado, L.G. Pérez-Montoto, R. Concu, G. Podda, and B. Shen Review of MARCH-INSIDE & complex networks prediction of drugs: aDMET, anti-parasite activity, metabolizing enzymes and cardiotoxicity proteome Biomarkers Curr. Drug Metab. 11 2010 379 406
    • (2010) Curr. Drug Metab. , vol.11 , pp. 379-406
    • González-Díaz, H.1    Duardo-Sanchez, A.2    Ubeira, F.M.3    Prado-Prado, F.4    Pérez-Montoto, L.G.5    Concu, R.6    Podda, G.7    Shen, B.8
  • 89
    • 77957956659 scopus 로고    scopus 로고
    • Predicting drugs and proteins in parasite infections with topological indices of complex networks: Theoretical backgrounds, applications, and legal issues
    • H. Gonzalez-Diaz, F. Romaris, A. Duardo-Sanchez, L.G. Perez-Montoto, F. Prado-Prado, G. Patlewicz, and F.M. Ubeira Predicting drugs and proteins in parasite infections with topological indices of complex networks: theoretical backgrounds, applications, and legal issues Curr. Pharm. Des. 16 2010 2737 2764
    • (2010) Curr. Pharm. Des. , vol.16 , pp. 2737-2764
    • Gonzalez-Diaz, H.1    Romaris, F.2    Duardo-Sanchez, A.3    Perez-Montoto, L.G.4    Prado-Prado, F.5    Patlewicz, G.6    Ubeira, F.M.7
  • 90
    • 77949898043 scopus 로고    scopus 로고
    • Computational toxicology approaches at the US food and drug administration
    • C. Yang, L.G. Valerio Jr., and K.B. Arvidson Computational toxicology approaches at the US food and drug administration Altern. Lab. Anim. 37 2009 523 531
    • (2009) Altern. Lab. Anim. , vol.37 , pp. 523-531
    • Yang, C.1    Valerio Jr., L.G.2    Arvidson, K.B.3
  • 91
    • 28644445655 scopus 로고    scopus 로고
    • A two-dimensional electrophoresis proteomic reference map and systematic identification of 1367 proteins from a cell suspension culture of the model legume Medicago truncatula
    • DOI 10.1074/mcp.D500005-MCP200
    • Z. Lei, A.M. Elmer, B.S. Watson, R.A. Dixon, P.J. Mendes, and L.W. Sumner A two-dimensional electrophoresis proteomic reference map and systematic identification of 1367 proteins from a cell suspension culture of the model legume Medicago truncatula Mol. Cell Proteomics 4 2005 1812 1825 (Pubitemid 41749273)
    • (2005) Molecular and Cellular Proteomics , vol.4 , Issue.11 , pp. 1812-1825
    • Lei, Z.1    Elmer, A.M.2    Watson, B.S.3    Dixon, R.A.4    Mendes, P.J.5    Sumner, L.W.6
  • 94
    • 18144423424 scopus 로고    scopus 로고
    • Demonstration of isoleucine 199 as a structural determinant for the selective inhibition of human monoamine oxidase B by specific reversible inhibitors
    • DOI 10.1074/jbc.M500949200
    • F. Hubalek, C. Binda, A. Khalil, M. Li, A. Mattevi, N. Castagnoli, and D.E. Edmondson Demonstration of isoleucine 199 as a structural determinant for the selective inhibition of human monoamine oxidase B by specific reversible inhibitors J. Biol. Chem. 280 2005 15761 15766 (Pubitemid 40616695)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.16 , pp. 15761-15766
    • Hubalek, F.1    Binda, C.2    Khalil, A.3    Li, M.4    Mattevi, A.5    Castagnoli, N.6    Edmondson, D.E.7
  • 95
    • 33749992363 scopus 로고    scopus 로고
    • Structure of the human mitochondrial monoamine oxidase B: New chemical implications for neuroprotectant drug design
    • C. Binda, F. Hubalek, M. Li, N. Castagnoli, D.E. Edmondson, and A. Mattevi Structure of the human mitochondrial monoamine oxidase B: new chemical implications for neuroprotectant drug design Neurology 67 2006 S5 S7
    • (2006) Neurology , vol.67
    • Binda, C.1    Hubalek, F.2    Li, M.3    Castagnoli, N.4    Edmondson, D.E.5    Mattevi, A.6


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