-
1
-
-
2442537233
-
Gene regulatory network growth by duplication
-
Teichmann SA, Madan Babu M (2004) Gene regulatory network growth by duplication. Nature Genetics 36: 492-496.
-
(2004)
Nature Genetics
, vol.36
, pp. 492-496
-
-
Teichmann, S.A.1
Madan Babu, M.2
-
2
-
-
2942606066
-
Structure and evolution of transcriptional regulatory networks
-
Madan Babu M, Luscombe NM, Aravind L. Gerstein M, Teichmann SA (2004) Structure and evolution of transcriptional regulatory networks. Curr Opin Struc, Biol 14:283-291.
-
(2004)
Curr Opin Struc, Biol
, vol.14
, pp. 283-291
-
-
Madan Babu, M.1
Luscombe, N.M.2
Aravind, L.3
Gerstein, M.4
Teichmann, S.A.5
-
3
-
-
0033782304
-
Modeling transcriptional control in gene networks-methods, recent results and future directions
-
Smolen P, Baxter DA, Byrne JH (2000) Modeling transcriptional control in gene networks-methods, recent results and future directions. Bul Math Biol 62: 247-292.
-
(2000)
Bul Math Biol
, vol.62
, pp. 247-292
-
-
Smolen, P.1
Baxter, D.A.2
Byrne, J.H.3
-
5
-
-
0002054202
-
Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation
-
Somogyi R, Sniegoski C (1996) Modeling the complexity of genetic networks: understanding multigenic and pleiotropic regulation. Complexity 1: 45-63.
-
(1996)
Complexity
, vol.1
, pp. 45-63
-
-
Somogyi, R.1
Sniegoski, C.2
-
6
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state
-
Thomas R, Thieffry D, Kaufmann M (1995) Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull Math- Biol 57: 247-776.
-
(1995)
Bull Math- Biol
, vol.57
, pp. 247-776
-
-
Thomas, R.1
Thieffry, D.2
Kaufmann, M.3
-
7
-
-
0031582803
-
Programming the drosophila embryo
-
Boden J (1997) Programming the drosophila embryo. J Theor Biol 188: 391-445.
-
(1997)
J Theor Biol
, vol.188
, pp. 391-445
-
-
Boden, J.1
-
8
-
-
0031915896
-
Large scale temporal gene expression mapping of central nervous system development
-
Wen XL, Fuhrman S, Michaels G, Carr D, Smith S, et al. (1998) Large scale temporal gene expression mapping of central nervous system development. Proc Natl Acad Sci USA 95: 334-339.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 334-339
-
-
Wen, X.L.1
Fuhrman, S.2
Michaels, G.3
Carr, D.4
Smith, S.5
-
10
-
-
0002275384
-
The dynamics of feedback control circuits in biochemical pathways
-
Tysson J, Othmer HG (1978) The dynamics of feedback control circuits in biochemical pathways. Prog Theor Biol 5: 2-62.
-
(1978)
Prog Theor Biol
, vol.5
, pp. 2-62
-
-
Tysson, J.1
Othmer, H.G.2
-
11
-
-
0014319313
-
Mathematics of cellular control processes. i. negative feedback to one gene
-
Griffith JS (1968) Mathematics of cellular control processes. i. negative feedback to one gene. J Theor Biol 20: 202-208.
-
(1968)
J Theor Biol
, vol.20
, pp. 202-208
-
-
Griffith, J.S.1
-
12
-
-
0014318637
-
Mathematics of cellular control processes. ii. positive feedback to one gene
-
Griffith JS (1968) Mathematics of cellular control processes. ii. positive feedback to one gene. J Theor Biol 20: 209-216.
-
(1968)
J Theor Biol
, vol.20
, pp. 209-216
-
-
Griffith, J.S.1
-
13
-
-
0023080895
-
Oscillations and multiple steady states in a cyclic gene model with repression
-
Smith H (1987) Oscillations and multiple steady states in a cyclic gene model with repression. J Math Biol 25: 169-190.
-
(1987)
J Math Biol
, vol.25
, pp. 169-190
-
-
Smith, H.1
-
14
-
-
0001723411
-
Logical identification of all steady states: The concept of feedback loop characteristic states
-
Snoussi EH, Thomas R (1993) Logical identification of all steady states: The concept of feedback loop characteristic states. Bull Math Biol 55: 973-991.
-
(1993)
Bull Math Biol
, vol.55
, pp. 973-991
-
-
Snoussi, E.H.1
Thomas, R.2
-
15
-
-
0028844979
-
A mathematical framework for describing and analyzing gene regulatory networks
-
Mestl T, Plahte E, Omholt SW (1995) A mathematical framework for describing and analyzing gene regulatory networks. J Theor Biol 176: 291-300.
-
(1995)
J Theor Biol
, vol.176
, pp. 291-300
-
-
Mestl, T.1
Plahte, E.2
Omholt, S.W.3
-
16
-
-
0002501173
-
Chaos in high dimensional neural and gene networks
-
Mestl T, Lemay C, Glass L (1996) Chaos in high dimensional neural and gene networks. Physical D 98: 33-52.
-
(1996)
Physical D
, vol.98
, pp. 33-52
-
-
Mestl, T.1
Lemay, C.2
Glass, L.3
-
17
-
-
0032020122
-
A methodological basis for description and analysis of systems with complex switch-like interactions
-
Plahte E, Mestl T, Omholt SW (1998) A methodological basis for description and analysis of systems with complex switch-like interactions. J Math Biol 36: 321-348.
-
(1998)
J Math Biol
, vol.36
, pp. 321-348
-
-
Plahte, E.1
Mestl, T.2
Omholt, S.W.3
-
19
-
-
0032549745
-
Genomic cis-regulatory logic, experimental and computational analysis of a sea urchin gene
-
Yuh CH, Bolouri H, Davidson EH (1998) Genomic cis-regulatory logic, experimental and computational analysis of a sea urchin gene. Science 279: 1896-1902.
-
(1998)
Science
, vol.279
, pp. 1896-1902
-
-
Yuh, C.H.1
Bolouri, H.2
Davidson, E.H.3
-
20
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
de Jong H (2002) Modeling and simulation of genetic regulatory systems: A literature review. J Comp Biol 9(1): 67-103.
-
(2002)
J Comp Biol
, vol.9
, Issue.1
, pp. 67-103
-
-
de Jong, H.1
-
21
-
-
14844286390
-
Reverse-engineering transcription control networks
-
Gardner TS, Faith JJ (2005) Reverse-engineering transcription control networks. Physics of Life Reviews 2(1): 65-88.
-
(2005)
Physics of Life Reviews
, vol.2
, Issue.1
, pp. 65-88
-
-
Gardner, T.S.1
Faith, J.J.2
-
22
-
-
0034546905
-
From genotype to phenotype: Bufferring mechanism and the storage of genetic information
-
Rutherford S (2000) From genotype to phenotype: bufferring mechanism and the storage of genetic information. BioEssays 22: 1095-1105.
-
(2000)
BioEssays
, vol.22
, pp. 1095-1105
-
-
Rutherford, S.1
-
23
-
-
2942572373
-
Reverse engineering of gene regulatory networks: A finite state linear model
-
Brazma A, Schlitt T (2003) Reverse engineering of gene regulatory networks: a finite state linear model. Genome Biology 4(6): P5.
-
(2003)
Genome Biology
, vol.4
, Issue.6
-
-
Brazma, A.1
Schlitt, T.2
-
24
-
-
13844253726
-
A feedforward loop motif in transcriptional regulation: Induction and repression
-
Hayot F, Jayaprakash C (2005) A feedforward loop motif in transcriptional regulation: induction and repression. J Theor Biol 234: 133-143.
-
(2005)
J Theor Biol
, vol.234
, pp. 133-143
-
-
Hayot, F.1
Jayaprakash, C.2
-
25
-
-
33745780500
-
Network motifs: Structure does not determine function
-
Ingram PJ, Stumpf MPH, Stark J (2006) Network motifs: Structure does not determine function. BMC Genomics 7: 108.
-
(2006)
BMC Genomics
, vol.7
, pp. 108
-
-
Ingram, P.J.1
Stumpf, M.P.H.2
Stark, J.3
-
26
-
-
0034961694
-
Stochsim: Modelling of stochastic biomolecular processes
-
Novere NL, Shimizu TS (2001) Stochsim: modelling of stochastic biomolecular processes. Bioinformatics 17: 575-576.
-
(2001)
Bioinformatics
, vol.17
, pp. 575-576
-
-
Novere, N.L.1
Shimizu, T.S.2
-
31
-
-
0034051465
-
Canalization in evolutionary genetics: A stabilizing theory?
-
Gibson G, Wagner G (2000) Canalization in evolutionary genetics: a stabilizing theory? BioEssays 22: 372-380.
-
(2000)
BioEssays
, vol.22
, pp. 372-380
-
-
Gibson, G.1
Wagner, G.2
-
32
-
-
0031879153
-
The evolution of canalization and the breaking of von baer's laws: Modeling the evolution of development with epistasis
-
Rice SH (1998) The evolution of canalization and the breaking of von baer's laws: Modeling the evolution of development with epistasis. Evolution 52: 647-656.
-
(1998)
Evolution
, vol.52
, pp. 647-656
-
-
Rice, S.H.1
-
34
-
-
34249988665
-
Extracting qualitative dynamics from experimental data
-
Broomhead DS, King, GP (1986) Extracting qualitative dynamics from experimental data. Physica D 20: 217-236.
-
(1986)
Physica D
, vol.20
, pp. 217-236
-
-
Broomhead, D.S.1
King, G.P.2
-
35
-
-
0001306977
-
Modularity and dynamics of cellular networks
-
Darroch JN, Mosimann JE (1985) Modularity and dynamics of cellular networks Biometrika 72(2): 241-252.
-
(1985)
Biometrika
, vol.72
, Issue.2
, pp. 241-252
-
-
Darroch, J.N.1
Mosimann, J.E.2
-
36
-
-
10744226222
-
Computational discovery of gene modules and regulatory networks
-
Bar-Joseph Z, Gorber GK, Lee TI, Rinaldi NJ, Yoo JY, et al. (2003) Computational discovery of gene modules and regulatory networks. Nature Biotechnology 21(11): 1295-1297.
-
(2003)
Nature Biotechnology
, vol.21
, Issue.11
, pp. 1295-1297
-
-
Bar-Joseph, Z.1
Gorber, G.K.2
Lee, T.I.3
Rinaldi, N.J.4
Yoo, J.Y.5
-
37
-
-
33846002373
-
-
Qi Y, Ge h (2006) Modularity and dynamics of cellular networks. PLoS Computational Biology 2(12): e174.
-
Qi Y, Ge h (2006) Modularity and dynamics of cellular networks. PLoS Computational Biology 2(12): e174.
-
-
-
-
38
-
-
0003899178
-
-
Selected Papers of Heinz von Foerster. Intersystems Publications: Seaside, CA
-
von Foerster H (1981) Observing Systems: Selected Papers of Heinz von Foerster. Intersystems Publications: Seaside, CA.
-
(1981)
Observing Systems
-
-
von Foerster, H.1
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