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Volumn 2, Issue 6, 2007, Pages

Indeterminacy of reverse engineering of gene regulatory networks: The curse of gene elasticity

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE; TRANSCRIPTION FACTOR; DNA; PROTEIN;

EID: 38349055557     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0000562     Document Type: Article
Times cited : (40)

References (38)
  • 1
    • 2442537233 scopus 로고    scopus 로고
    • Gene regulatory network growth by duplication
    • Teichmann SA, Madan Babu M (2004) Gene regulatory network growth by duplication. Nature Genetics 36: 492-496.
    • (2004) Nature Genetics , vol.36 , pp. 492-496
    • Teichmann, S.A.1    Madan Babu, M.2
  • 3
    • 0033782304 scopus 로고    scopus 로고
    • Modeling transcriptional control in gene networks-methods, recent results and future directions
    • Smolen P, Baxter DA, Byrne JH (2000) Modeling transcriptional control in gene networks-methods, recent results and future directions. Bul Math Biol 62: 247-292.
    • (2000) Bul Math Biol , vol.62 , pp. 247-292
    • Smolen, P.1    Baxter, D.A.2    Byrne, J.H.3
  • 5
    • 0002054202 scopus 로고    scopus 로고
    • Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation
    • Somogyi R, Sniegoski C (1996) Modeling the complexity of genetic networks: understanding multigenic and pleiotropic regulation. Complexity 1: 45-63.
    • (1996) Complexity , vol.1 , pp. 45-63
    • Somogyi, R.1    Sniegoski, C.2
  • 6
    • 0029267491 scopus 로고
    • Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state
    • Thomas R, Thieffry D, Kaufmann M (1995) Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull Math- Biol 57: 247-776.
    • (1995) Bull Math- Biol , vol.57 , pp. 247-776
    • Thomas, R.1    Thieffry, D.2    Kaufmann, M.3
  • 7
    • 0031582803 scopus 로고    scopus 로고
    • Programming the drosophila embryo
    • Boden J (1997) Programming the drosophila embryo. J Theor Biol 188: 391-445.
    • (1997) J Theor Biol , vol.188 , pp. 391-445
    • Boden, J.1
  • 8
    • 0031915896 scopus 로고    scopus 로고
    • Large scale temporal gene expression mapping of central nervous system development
    • Wen XL, Fuhrman S, Michaels G, Carr D, Smith S, et al. (1998) Large scale temporal gene expression mapping of central nervous system development. Proc Natl Acad Sci USA 95: 334-339.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 334-339
    • Wen, X.L.1    Fuhrman, S.2    Michaels, G.3    Carr, D.4    Smith, S.5
  • 10
    • 0002275384 scopus 로고
    • The dynamics of feedback control circuits in biochemical pathways
    • Tysson J, Othmer HG (1978) The dynamics of feedback control circuits in biochemical pathways. Prog Theor Biol 5: 2-62.
    • (1978) Prog Theor Biol , vol.5 , pp. 2-62
    • Tysson, J.1    Othmer, H.G.2
  • 11
    • 0014319313 scopus 로고
    • Mathematics of cellular control processes. i. negative feedback to one gene
    • Griffith JS (1968) Mathematics of cellular control processes. i. negative feedback to one gene. J Theor Biol 20: 202-208.
    • (1968) J Theor Biol , vol.20 , pp. 202-208
    • Griffith, J.S.1
  • 12
    • 0014318637 scopus 로고
    • Mathematics of cellular control processes. ii. positive feedback to one gene
    • Griffith JS (1968) Mathematics of cellular control processes. ii. positive feedback to one gene. J Theor Biol 20: 209-216.
    • (1968) J Theor Biol , vol.20 , pp. 209-216
    • Griffith, J.S.1
  • 13
    • 0023080895 scopus 로고
    • Oscillations and multiple steady states in a cyclic gene model with repression
    • Smith H (1987) Oscillations and multiple steady states in a cyclic gene model with repression. J Math Biol 25: 169-190.
    • (1987) J Math Biol , vol.25 , pp. 169-190
    • Smith, H.1
  • 14
    • 0001723411 scopus 로고
    • Logical identification of all steady states: The concept of feedback loop characteristic states
    • Snoussi EH, Thomas R (1993) Logical identification of all steady states: The concept of feedback loop characteristic states. Bull Math Biol 55: 973-991.
    • (1993) Bull Math Biol , vol.55 , pp. 973-991
    • Snoussi, E.H.1    Thomas, R.2
  • 15
    • 0028844979 scopus 로고
    • A mathematical framework for describing and analyzing gene regulatory networks
    • Mestl T, Plahte E, Omholt SW (1995) A mathematical framework for describing and analyzing gene regulatory networks. J Theor Biol 176: 291-300.
    • (1995) J Theor Biol , vol.176 , pp. 291-300
    • Mestl, T.1    Plahte, E.2    Omholt, S.W.3
  • 16
    • 0002501173 scopus 로고    scopus 로고
    • Chaos in high dimensional neural and gene networks
    • Mestl T, Lemay C, Glass L (1996) Chaos in high dimensional neural and gene networks. Physical D 98: 33-52.
    • (1996) Physical D , vol.98 , pp. 33-52
    • Mestl, T.1    Lemay, C.2    Glass, L.3
  • 17
    • 0032020122 scopus 로고    scopus 로고
    • A methodological basis for description and analysis of systems with complex switch-like interactions
    • Plahte E, Mestl T, Omholt SW (1998) A methodological basis for description and analysis of systems with complex switch-like interactions. J Math Biol 36: 321-348.
    • (1998) J Math Biol , vol.36 , pp. 321-348
    • Plahte, E.1    Mestl, T.2    Omholt, S.W.3
  • 18
  • 19
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic, experimental and computational analysis of a sea urchin gene
    • Yuh CH, Bolouri H, Davidson EH (1998) Genomic cis-regulatory logic, experimental and computational analysis of a sea urchin gene. Science 279: 1896-1902.
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3
  • 20
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: A literature review
    • de Jong H (2002) Modeling and simulation of genetic regulatory systems: A literature review. J Comp Biol 9(1): 67-103.
    • (2002) J Comp Biol , vol.9 , Issue.1 , pp. 67-103
    • de Jong, H.1
  • 21
    • 14844286390 scopus 로고    scopus 로고
    • Reverse-engineering transcription control networks
    • Gardner TS, Faith JJ (2005) Reverse-engineering transcription control networks. Physics of Life Reviews 2(1): 65-88.
    • (2005) Physics of Life Reviews , vol.2 , Issue.1 , pp. 65-88
    • Gardner, T.S.1    Faith, J.J.2
  • 22
    • 0034546905 scopus 로고    scopus 로고
    • From genotype to phenotype: Bufferring mechanism and the storage of genetic information
    • Rutherford S (2000) From genotype to phenotype: bufferring mechanism and the storage of genetic information. BioEssays 22: 1095-1105.
    • (2000) BioEssays , vol.22 , pp. 1095-1105
    • Rutherford, S.1
  • 23
    • 2942572373 scopus 로고    scopus 로고
    • Reverse engineering of gene regulatory networks: A finite state linear model
    • Brazma A, Schlitt T (2003) Reverse engineering of gene regulatory networks: a finite state linear model. Genome Biology 4(6): P5.
    • (2003) Genome Biology , vol.4 , Issue.6
    • Brazma, A.1    Schlitt, T.2
  • 24
    • 13844253726 scopus 로고    scopus 로고
    • A feedforward loop motif in transcriptional regulation: Induction and repression
    • Hayot F, Jayaprakash C (2005) A feedforward loop motif in transcriptional regulation: induction and repression. J Theor Biol 234: 133-143.
    • (2005) J Theor Biol , vol.234 , pp. 133-143
    • Hayot, F.1    Jayaprakash, C.2
  • 25
    • 33745780500 scopus 로고    scopus 로고
    • Network motifs: Structure does not determine function
    • Ingram PJ, Stumpf MPH, Stark J (2006) Network motifs: Structure does not determine function. BMC Genomics 7: 108.
    • (2006) BMC Genomics , vol.7 , pp. 108
    • Ingram, P.J.1    Stumpf, M.P.H.2    Stark, J.3
  • 26
    • 0034961694 scopus 로고    scopus 로고
    • Stochsim: Modelling of stochastic biomolecular processes
    • Novere NL, Shimizu TS (2001) Stochsim: modelling of stochastic biomolecular processes. Bioinformatics 17: 575-576.
    • (2001) Bioinformatics , vol.17 , pp. 575-576
    • Novere, N.L.1    Shimizu, T.S.2
  • 31
    • 0034051465 scopus 로고    scopus 로고
    • Canalization in evolutionary genetics: A stabilizing theory?
    • Gibson G, Wagner G (2000) Canalization in evolutionary genetics: a stabilizing theory? BioEssays 22: 372-380.
    • (2000) BioEssays , vol.22 , pp. 372-380
    • Gibson, G.1    Wagner, G.2
  • 32
    • 0031879153 scopus 로고    scopus 로고
    • The evolution of canalization and the breaking of von baer's laws: Modeling the evolution of development with epistasis
    • Rice SH (1998) The evolution of canalization and the breaking of von baer's laws: Modeling the evolution of development with epistasis. Evolution 52: 647-656.
    • (1998) Evolution , vol.52 , pp. 647-656
    • Rice, S.H.1
  • 34
    • 34249988665 scopus 로고
    • Extracting qualitative dynamics from experimental data
    • Broomhead DS, King, GP (1986) Extracting qualitative dynamics from experimental data. Physica D 20: 217-236.
    • (1986) Physica D , vol.20 , pp. 217-236
    • Broomhead, D.S.1    King, G.P.2
  • 35
    • 0001306977 scopus 로고
    • Modularity and dynamics of cellular networks
    • Darroch JN, Mosimann JE (1985) Modularity and dynamics of cellular networks Biometrika 72(2): 241-252.
    • (1985) Biometrika , vol.72 , Issue.2 , pp. 241-252
    • Darroch, J.N.1    Mosimann, J.E.2
  • 37
    • 33846002373 scopus 로고    scopus 로고
    • Qi Y, Ge h (2006) Modularity and dynamics of cellular networks. PLoS Computational Biology 2(12): e174.
    • Qi Y, Ge h (2006) Modularity and dynamics of cellular networks. PLoS Computational Biology 2(12): e174.
  • 38
    • 0003899178 scopus 로고
    • Selected Papers of Heinz von Foerster. Intersystems Publications: Seaside, CA
    • von Foerster H (1981) Observing Systems: Selected Papers of Heinz von Foerster. Intersystems Publications: Seaside, CA.
    • (1981) Observing Systems
    • von Foerster, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.