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Volumn 76, Issue 6, 2010, Pages 538-545

Bond-based 2D Quadratic fingerprints in QSAR studies: Virtual and in vitro tyrosinase inhibitory activity elucidation

Author keywords

Bond based quadratic indices; LDA based QSAR model; Lignan; TOMOCOMD CARDD software; Tyrosinase inhibitor

Indexed keywords

CHALCONE DERIVATIVE; ENZYME INHIBITOR; KOJIC ACID; LIGNAN DERIVATIVE; MIMOSINE; PYRIDOXINE DERIVATIVE; STEROID; TRIPEPTIDE DERIVATIVE; TYROSINASE INHIBITOR; UNCLASSIFIED DRUG;

EID: 78349252722     PISSN: 17470277     EISSN: 17470285     Source Type: Journal    
DOI: 10.1111/j.1747-0285.2010.01032.x     Document Type: Article
Times cited : (46)

References (43)
  • 1
    • 0019216697 scopus 로고
    • Melanin production and differentiation in batch cultures of the polymorphic fungus
    • Gadd G.W. (1980) Melanin production and differentiation in batch cultures of the polymorphic fungus. FEMS Microbiol Lett;9:237-240.
    • (1980) FEMS Microbiol Lett , vol.9 , pp. 237-240
    • Gadd, G.W.1
  • 2
    • 0000772612 scopus 로고
    • Biosynthesis and functions of fungal melanins
    • Bell A.A., Wheeler M.H. (1986) Biosynthesis and functions of fungal melanins. Annu Rev Phytopathol;24:411-451.
    • (1986) Annu Rev Phytopathol , vol.24 , pp. 411-451
    • Bell, A.A.1    Wheeler, M.H.2
  • 5
    • 0842326736 scopus 로고    scopus 로고
    • QSAR and kinetics of the inhibition of benzaldehyde derivatives against Sacrophaga neobelliaria phenoloxidase
    • Li W., Kubo I. (2004) QSAR and kinetics of the inhibition of benzaldehyde derivatives against Sacrophaga neobelliaria phenoloxidase. Bioorg Med Chem;12:701-713.
    • (2004) Bioorg Med Chem , vol.12 , pp. 701-713
    • Li, W.1    Kubo, I.2
  • 6
    • 47249118378 scopus 로고    scopus 로고
    • Quantitative structure-activity relationship studies of mushroom tyrosinase inhibitors
    • Xue C.-B., Luo W.-C., Ding Q., Liu S.-Z., Gao X.-X. (2008) Quantitative structure-activity relationship studies of mushroom tyrosinase inhibitors. J Comput Aided Mol Des;22:299-309.
    • (2008) J Comput Aided Mol Des , vol.22 , pp. 299-309
    • Xue, C.1    Luo, W.2    Ding, Q.3    Liu, S.4    Gao, X.5
  • 7
    • 34250675776 scopus 로고    scopus 로고
    • Atom-based 2D quadratic indices in drug discovery of novel tyrosinase inhibitors. Results of in silico studies supported by experimental results
    • Marrero-Ponce Y., Khan M.T.H., Casañola-Martín G.M., Ather A., Sultankhodzhaev M.N., Torrens F. (2007) Atom-based 2D quadratic indices in drug discovery of novel tyrosinase inhibitors. Results of in silico studies supported by experimental results. QSAR Comb Sci;26:469-487.
    • (2007) QSAR Comb Sci , vol.26 , pp. 469-487
    • Marrero-Ponce, Y.1    Khan, M.T.H.2    Casañola-Martín, G.M.3    Ather, A.4    Sultankhodzhaev, M.N.5    Torrens, F.6
  • 9
    • 33845972688 scopus 로고    scopus 로고
    • TOMOCOMD-CARDD descriptors-based virtual screening of tyrosinase inhibitors: evaluation of different classification model combinations using bond-based linear indices
    • Casanola-Martin G.M., Marrero-Ponce Y., Khan M.T., Ather A., Sultan S., Torrens F. et al. (2007) TOMOCOMD-CARDD descriptors-based virtual screening of tyrosinase inhibitors: evaluation of different classification model combinations using bond-based linear indices. Bioorg Med Chem;15:1483-1503.
    • (2007) Bioorg Med Chem , vol.15 , pp. 1483-1503
    • Casanola-Martin, G.M.1    Marrero-Ponce, Y.2    Khan, M.T.3    Ather, A.4    Sultan, S.5    Torrens, F.6
  • 11
    • 0036835460 scopus 로고    scopus 로고
    • Integration of virtual and high-throughput screening
    • Bajorath J. (2002) Integration of virtual and high-throughput screening. Nat Rev Drug Discov;1:882-894.
    • (2002) Nat Rev Drug Discov , vol.1 , pp. 882-894
    • Bajorath, J.1
  • 12
    • 3042724842 scopus 로고    scopus 로고
    • Computational methods for the identification and optimisation of high quality leads
    • Pirard B. (2004) Computational methods for the identification and optimisation of high quality leads. Comb Chem High Throughput Screen;7:271-280.
    • (2004) Comb Chem High Throughput Screen , vol.7 , pp. 271-280
    • Pirard, B.1
  • 13
    • 0035498999 scopus 로고    scopus 로고
    • The impact of informatics and computational chemistry on synthesis and screening
    • Manly C.J., Louise-May S., Hammer J.D. (2001) The impact of informatics and computational chemistry on synthesis and screening. Drug Discov Today;6:1101-1110.
    • (2001) Drug Discov Today , vol.6 , pp. 1101-1110
    • Manly, C.J.1    Louise-May, S.2    Hammer, J.D.3
  • 14
    • 3342932276 scopus 로고    scopus 로고
    • Total and local quadratic indices of the molecular pseudograph's atom adjacency matrix: applications to the prediction of physical properties of organic compounds
    • Marrero-Ponce Y. (2003) Total and local quadratic indices of the molecular pseudograph's atom adjacency matrix: applications to the prediction of physical properties of organic compounds. Molecules;8:687-726.
    • (2003) Molecules , vol.8 , pp. 687-726
    • Marrero-Ponce, Y.1
  • 15
    • 14844336963 scopus 로고    scopus 로고
    • Quadratic indices of the molecular pseudograph's atom adjacency matrix and their stochastic forms: a novel approach for virtual screening and in silico discovery of new lead paramphistomicide drugs-like compounds
    • (Theochem)
    • Marrero-Ponce Y., Huesca-Guillen A., Ibarra-Velarde F. (2005) Quadratic indices of the molecular pseudograph's atom adjacency matrix and their stochastic forms: a novel approach for virtual screening and in silico discovery of new lead paramphistomicide drugs-like compounds. J Mol Struct (Theochem);717:67-79.
    • (2005) J Mol Struct , vol.717 , pp. 67-79
    • Marrero-Ponce, Y.1    Huesca-Guillen, A.2    Ibarra-Velarde, F.3
  • 18
    • 33644758439 scopus 로고    scopus 로고
    • Non-stochastic and stochastic linear indices of the molecular pseudograph's atom adjacency matrix: a novel approach for computational-in silico-screening and ''rational" selection of new lead antibacterial agents
    • Marrero-Ponce Y., Medina-Marrero R., Martinez Y., Torrens F., Romero-Zaldivar V., Castro E.A. (2006) Non-stochastic and stochastic linear indices of the molecular pseudograph's atom adjacency matrix: a novel approach for computational-in silico-screening and ''rational" selection of new lead antibacterial agents. J Mol Model;12:255-271.
    • (2006) J Mol Model , vol.12 , pp. 255-271
    • Marrero-Ponce, Y.1    Medina-Marrero, R.2    Martinez, Y.3    Torrens, F.4    Romero-Zaldivar, V.5    Castro, E.A.6
  • 19
    • 12344273017 scopus 로고    scopus 로고
    • Nucleic acid quadratic indices of the macromolecular graphs nucleotides adjacency matrix. Modeling of footprints after the interaction of paromomycin with the HIV-1 ψ-RNA packaging region
    • Marrero-Ponce Y., Nodarse D., González H.D., Ramos de Armas R., Romero-Zaldivar V., Torrens F. et al. (2004) Nucleic acid quadratic indices of the macromolecular graphs nucleotides adjacency matrix. Modeling of footprints after the interaction of paromomycin with the HIV-1 ψ-RNA packaging region. Int J Mol Sci;5:276-293.
    • (2004) Int J Mol Sci , vol.5 , pp. 276-293
    • Marrero-Ponce, Y.1    Nodarse, D.2    González, H.D.3    Ramos de Armas, R.4    Romero-Zaldivar, V.5    Torrens, F.6
  • 20
    • 17444421125 scopus 로고    scopus 로고
    • Linear indices of the 'macromolecular graph's nucleotides adjacency matrix' as a promising approach for bioinformatics studies. Part 1: prediction of paromomycin's affinity constant with HIV-1 psi-RNA packaging region
    • Marrero Ponce Y., Castillo Garit J.A., Nodarse D. (2005) Linear indices of the 'macromolecular graph's nucleotides adjacency matrix' as a promising approach for bioinformatics studies. Part 1: prediction of paromomycin's affinity constant with HIV-1 psi-RNA packaging region. Bioorg Med Chem;13:3397-3404.
    • (2005) Bioorg Med Chem , vol.13 , pp. 3397-3404
    • Marrero Ponce, Y.1    Castillo Garit, J.A.2    Nodarse, D.3
  • 21
    • 23844448476 scopus 로고    scopus 로고
    • Ligand-based virtual screening and in silico design of new antimalarial compounds using nonstochastic and stochastic total and atom-type quadratic maps
    • Marrero-Ponce Y., Iyarreta-Veitia M., Montero-Torres A., Romero-Zaldivar C., Brandt C.A., Avila P.E. et al. (2005) Ligand-based virtual screening and in silico design of new antimalarial compounds using nonstochastic and stochastic total and atom-type quadratic maps. J Chem Inf Model;45:1082-1100.
    • (2005) J Chem Inf Model , vol.45 , pp. 1082-1100
    • Marrero-Ponce, Y.1    Iyarreta-Veitia, M.2    Montero-Torres, A.3    Romero-Zaldivar, C.4    Brandt, C.A.5    Avila, P.E.6
  • 22
    • 33845911522 scopus 로고    scopus 로고
    • Bond-based global and local (bond and bond-type) quadratic indices and their applications to computer-aided molecular design. 1. QSPR studies of octane isomers
    • Marrero-Ponce Y., Torrens F. (2006) Bond-based global and local (bond and bond-type) quadratic indices and their applications to computer-aided molecular design. 1. QSPR studies of octane isomers. J Comput Aided Mol Des;20:685-701.
    • (2006) J Comput Aided Mol Des , vol.20 , pp. 685-701
    • Marrero-Ponce, Y.1    Torrens, F.2
  • 23
    • 0003438540 scopus 로고
    • The Nature of Chemical Bond
    • Ithaca (New York): Cornell University Press.
    • Pauling L. (1939) The Nature of Chemical Bond. Ithaca (New York): Cornell University Press.
    • (1939)
    • Pauling, L.1
  • 24
    • 0012019079 scopus 로고    scopus 로고
    • New 3D molecular descriptors: the WHIM theory and QSAR applications
    • Todeschini R., Gramatica P. (1998) New 3D molecular descriptors: the WHIM theory and QSAR applications. Perspect Drug Discov Des;9-11:355-380.
    • (1998) Perspect Drug Discov Des , vol.9-11 , pp. 355-380
    • Todeschini, R.1    Gramatica, P.2
  • 25
    • 0036589086 scopus 로고    scopus 로고
    • Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors. 1. Theory of the novel 3D molecular descriptors
    • Consonni V., Todeschini R., Pavan M. (2002) Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors. 1. Theory of the novel 3D molecular descriptors. J Chem Inf Comput Sci;42:682-692.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 682-692
    • Consonni, V.1    Todeschini, R.2    Pavan, M.3
  • 26
    • 0003816887 scopus 로고
    • Molecular Connectivity in Structure-Activity Analysis
    • Letchworth, UK: Research Studies Press.
    • Kier L.B., Hall L.H. (1986) Molecular Connectivity in Structure-Activity Analysis. Letchworth, UK: Research Studies Press.
    • (1986)
    • Kier, L.B.1    Hall, L.H.2
  • 27
    • 32844456498 scopus 로고    scopus 로고
    • Tyrosinase inhibitory lignans from the methanol extract of the roots of Vitex negundo Linn. and their structure-activity relationship
    • Azhar Ul.H., Malik A., Khan M.T.H., Anwar Ul.H., Khan S.B., Ahmad A., Choudhary M.I. (2006) Tyrosinase inhibitory lignans from the methanol extract of the roots of Vitex negundo Linn. and their structure-activity relationship. Phytomedicine;13:255-260.
    • (2006) Phytomedicine , vol.13 , pp. 255-260
    • Azhar, U.1    Malik, A.2    Khan, M.T.H.3    Anwar, U.4    Khan, S.B.5    Ahmad, A.6    Choudhary, M.I.7
  • 28
    • 3042522850 scopus 로고    scopus 로고
    • Chalcones as potent tyrosinase inhibitors: the effect of hydroxyl positions and numbers
    • Nerya O., Musa R., Khatib S., Tamir S., Vaya J. (2004) Chalcones as potent tyrosinase inhibitors: the effect of hydroxyl positions and numbers. Phytochemistry;65:1389-1395.
    • (2004) Phytochemistry , vol.65 , pp. 1389-1395
    • Nerya, O.1    Musa, R.2    Khatib, S.3    Tamir, S.4    Vaya, J.5
  • 29
    • 2342586185 scopus 로고    scopus 로고
    • Solid-phase synthesis of kojic acid-tripeptides and their tyrosinase inhibitory activity, storage stability, and toxicity
    • Kim H., Choi J., Cho J.K., Kim S.Y., Lee Y.S. (2004) Solid-phase synthesis of kojic acid-tripeptides and their tyrosinase inhibitory activity, storage stability, and toxicity. Bioorg Med Chem Lett;14:2843-2846.
    • (2004) Bioorg Med Chem Lett , vol.14 , pp. 2843-2846
    • Kim, H.1    Choi, J.2    Cho, J.K.3    Kim, S.Y.4    Lee, Y.S.5
  • 30
    • 0037462058 scopus 로고    scopus 로고
    • Inhibition of diphenolase activity of tyrosinase by vitamin b(6) compounds
    • Yokochi N., Morita T., Yagi T. (2003) Inhibition of diphenolase activity of tyrosinase by vitamin b(6) compounds. J Agric Food Chem;51:2733-2736.
    • (2003) J Agric Food Chem , vol.51 , pp. 2733-2736
    • Yokochi, N.1    Morita, T.2    Yagi, T.3
  • 32
    • 0003853725 scopus 로고
    • Organic-Chemical Drugs and their Synonyms
    • Berlin: Akademie-Verlag.
    • Negwer M. (1987) Organic-Chemical Drugs and their Synonyms. Berlin: Akademie-Verlag.
    • (1987)
    • Negwer, M.1
  • 33
    • 0001833451 scopus 로고
    • Discriminant Analysis for Activity Prediction
    • In: Van De Waterbeemd H., editor. Weinheim: VCH Publishers
    • Van De Waterbeemd H. (1995) Discriminant analysis for activity prediction. In: Van De Waterbeemd H., editor. Discriminant Analysis for Activity Prediction. Weinheim: VCH Publishers; p. 265-288.
    • (1995) Discriminant analysis for activity prediction , pp. 265-288
    • Van De Waterbeemd, H.1
  • 34
    • 4544380467 scopus 로고    scopus 로고
    • 3D-Chiral quadratic indices of the molecular pseudograph's atom adjacency matrix and their application to central chirality codification: classification of ACE inhibitors and prediction of r-receptor antagonist activities
    • Marrero-Ponce Y., Díaz H.G., Romero V., Torrens F., Castro E.A. (2004) 3D-Chiral quadratic indices of the molecular pseudograph's atom adjacency matrix and their application to central chirality codification: classification of ACE inhibitors and prediction of r-receptor antagonist activities. Bioorg Med Chem;12:5331-5342.
    • (2004) Bioorg Med Chem , vol.12 , pp. 5331-5342
    • Marrero-Ponce, Y.1    Díaz, H.G.2    Romero, V.3    Torrens, F.4    Castro, E.A.5
  • 35
    • 8844224326 scopus 로고    scopus 로고
    • A new topological descriptors based model for predicting intestinal epithelial transport of drugs in Caco-2 cell culture
    • Marrero-Ponce Y., Cabrera M.A., Romero V., González D.H., Torrens F. (2004) A new topological descriptors based model for predicting intestinal epithelial transport of drugs in Caco-2 cell culture. J Pharm Pharm Sci;7:186-199.
    • (2004) J Pharm Pharm Sci , vol.7 , pp. 186-199
    • Marrero-Ponce, Y.1    Cabrera, M.A.2    Romero, V.3    González, D.H.4    Torrens, F.5
  • 36
    • 12844261737 scopus 로고    scopus 로고
    • Non-stochastic and stochastic linear indices of the 'molecular pseudograph's atom adjacency matrix': application to 'in silico' studies for the rational discovery of new antimalarial compounds
    • Marrero-Ponce Y., Montero-Torres A., Zaldivar C.R., Veitia M.I., Perez M.M., Sanchez R.N. (2005) Non-stochastic and stochastic linear indices of the 'molecular pseudograph's atom adjacency matrix': application to 'in silico' studies for the rational discovery of new antimalarial compounds. Bioorg Med Chem;13:1293-1304.
    • (2005) Bioorg Med Chem , vol.13 , pp. 1293-1304
    • Marrero-Ponce, Y.1    Montero-Torres, A.2    Zaldivar, C.R.3    Veitia, M.I.4    Perez, M.M.5    Sanchez, R.N.6
  • 37
    • 19944434385 scopus 로고    scopus 로고
    • Atom, atom-type and total molecular linear indices as a promising approach for bioorganic and medicinal chemistry: theoretical and experimental assessment of a novel method for virtual screening and rational design of new lead anthelmintic
    • Marrero-Ponce Y., Castillo-Garit J.A., Olazabal E., Serrano H.S., Morales A., Castanedo N., Ibarra-Velarde F., Huesca-Guillen A., Sánchez A.M., Torrens F., Castro E.A. (2005) Atom, atom-type and total molecular linear indices as a promising approach for bioorganic and medicinal chemistry: theoretical and experimental assessment of a novel method for virtual screening and rational design of new lead anthelmintic. Bioorg Med Chem;13:1005-1020.
    • (2005) Bioorg Med Chem , vol.13 , pp. 1005-1020
    • Marrero-Ponce, Y.1    Castillo-Garit, J.A.2    Olazabal, E.3    Serrano, H.S.4    Morales, A.5    Castanedo, N.6    Ibarra-Velarde, F.7    Huesca-Guillen, A.8    Sánchez, A.M.9    Torrens, F.10    Castro, E.A.11
  • 38
    • 0036708531 scopus 로고    scopus 로고
    • In silico studies toward the discovery of new anti-HIV nucleoside compounds with the use of TOPS-MODE and 2D/3D connectivity indices. 1. Pyrimidyl derivatives
    • Estrada E., Vilar S., Uriarte E., Gutierrez Y. (2002) In silico studies toward the discovery of new anti-HIV nucleoside compounds with the use of TOPS-MODE and 2D/3D connectivity indices. 1. Pyrimidyl derivatives. J Chem Inf Comput Sci;42:1194-1203.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 1194-1203
    • Estrada, E.1    Vilar, S.2    Uriarte, E.3    Gutierrez, Y.4
  • 39
    • 0000765554 scopus 로고
    • Statistical Validation of QSAR Results. Validation Tools
    • In: Van De Waterbeemd H., editor. New York: VCH Publishers
    • Wold S., Erikson L. (1995) Statistical validation of QSAR results. Validation tools. In: Van De Waterbeemd H., editor. Statistical Validation of QSAR Results. Validation Tools. New York: VCH Publishers; p. 309-318.
    • (1995) Statistical validation of QSAR results. Validation tools , pp. 309-318
    • Wold, S.1    Erikson, L.2
  • 41
    • 0033941034 scopus 로고    scopus 로고
    • Innovation in the pharmaceutical industry
    • Horrobin D.F. (2000) Innovation in the pharmaceutical industry. J R Soc Med;93:341-345.
    • (2000) J R Soc Med , vol.93 , pp. 341-345
    • Horrobin, D.F.1
  • 42
    • 0004315104 scopus 로고    scopus 로고
    • Handbook of Molecular Descriptors
    • Germany: Wiley-VCH.
    • Todeschini R., Consonni V. (2000) Handbook of Molecular Descriptors. Germany: Wiley-VCH.
    • (2000)
    • Todeschini, R.1    Consonni, V.2
  • 43
    • 57749084378 scopus 로고    scopus 로고
    • Synthesis of tyrosinase inhibitory (4-oxo-4H-pyran-2-yl)acrylic acid ester derivatives
    • Kang S.S., Kim J.H., Jin C., Lee Y.S. (2009) Synthesis of tyrosinase inhibitory (4-oxo-4H-pyran-2-yl)acrylic acid ester derivatives. Bioorg Med Chem Lett;19:188-191.
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 188-191
    • Kang, S.S.1    Kim, J.H.2    Jin, C.3    Lee, Y.S.4


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