메뉴 건너뛰기




Volumn 21, Issue 3, 2011, Pages 477-486

Selective ploidy ablation, a high-throughput plasmid transfer protocol, identifies new genes affecting topoisomerase I-induced DNA damage

Author keywords

[No Author keywords available]

Indexed keywords

CAMPTOTHECIN; DNA TOPOISOMERASE; SUMO PROTEIN;

EID: 79952267799     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.109033.110     Document Type: Article
Times cited : (69)

References (54)
  • 1
    • 33751565680 scopus 로고    scopus 로고
    • Systematic hybrid LOH: A new method to reduce false positives and negatives during screening of yeast gene deletion libraries
    • DOI 10.1002/yea.1423
    • Alvaro D, Sunjevaric I, Reid RJ, Lisby M, Stillman DJ, Rothstein R. 2006. Systematic hybrid LOH: A new method to reduce false positives and negatives during screening of yeast gene deletion libraries. Yeast 23: 1097-1106. (Pubitemid 44842306)
    • (2006) Yeast , vol.23 , Issue.14-15 , pp. 1097-1106
    • Alvaro, D.1    Sunjevaric, I.2    Reid, R.J.D.3    Lisby, M.4    Stillman, D.J.5    Rothstein, R.6
  • 4
    • 77649165394 scopus 로고    scopus 로고
    • Maintaining genome stability at the replication fork
    • Branzei D, Foiani M. 2010. Maintaining genome stability at the replication fork. Nat Rev Mol Cell Biol 11: 208-219.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 208-219
    • Branzei, D.1    Foiani, M.2
  • 6
    • 27744577727 scopus 로고    scopus 로고
    • Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
    • DOI 10.1016/j.cell.2005.10.023, PII S0092867405011566
    • Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, et al. 2005. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123: 581-592. (Pubitemid 41608462)
    • (2005) Cell , vol.123 , Issue.4 , pp. 581-592
    • Carrozza, M.J.1    Li, B.2    Florens, L.3    Suganuma, T.4    Swanson, S.K.5    Lee, K.K.6    Shia, W.-J.7    Anderson, S.8    Yates, J.9    Washburn, M.P.10    Workman, J.L.11
  • 7
    • 72449150129 scopus 로고    scopus 로고
    • Telomerase is essential to alleviate pif1-induced replication stress at telomeres
    • Chang M, Luke B, Kraft C, Li Z, Peter M, Lingner J, Rothstein R. 2009. Telomerase is essential to alleviate pif1-induced replication stress at telomeres. Genetics 183: 779-791.
    • (2009) Genetics , vol.183 , pp. 779-791
    • Chang, M.1    Luke, B.2    Kraft, C.3    Li, Z.4    Peter, M.5    Lingner, J.6    Rothstein, R.7
  • 8
    • 35048872745 scopus 로고    scopus 로고
    • Topoisomerase I-dependent viability loss in Saccharomyces cerevisiae mutants defective in both SUMO conjugation and DNA repair
    • DOI 10.1534/genetics.107.074708
    • Chen XL, Silver HR, Xiong L, Belichenko I, Adegite C, Johnson ES. 2007. Topoisomerase I-dependent viability loss in Saccharomyces cerevisiae mutants defective in both SUMO conjugation and DNA repair. Genetics 177: 17-30. (Pubitemid 47555828)
    • (2007) Genetics , vol.177 , Issue.1 , pp. 17-30
    • Chen, X.L.1    Silver, H.R.2    Xiong, L.3    Belichenko, I.4    Adegite, C.5    Johnson, E.S.6
  • 11
    • 22144434446 scopus 로고    scopus 로고
    • Multiple endonucleases function to repair covalent topoisomerase I complexes in Saccharomyces cerevisiae
    • DOI 10.1534/genetics.104.028795
    • Deng C, Brown JA, You D, Brown JM. 2005. Multiple endonucleases function to repair covalent topoisomerase I complexes in Saccharomyces cerevisiae. Genetics 170: 591-600. (Pubitemid 40980662)
    • (2005) Genetics , vol.170 , Issue.2 , pp. 591-600
    • Deng, C.1    Brown, J.A.2    You, D.3    Brown, J.M.4
  • 12
    • 77953931722 scopus 로고    scopus 로고
    • ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
    • doi: 10.1188/1471-2105-11-353
    • Dittmar JC, Reid RJ, Rothstein R. 2010. ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data. BMC Bioinformatics 11: 353. doi: 10.1188/1471-2105-11-353.
    • (2010) BMC Bioinformatics , vol.11 , pp. 353
    • Dittmar, J.C.1    Reid, R.J.2    Rothstein, R.3
  • 14
    • 0028213449 scopus 로고
    • Heat-inducible degron: A method for constructing temperature-sensitive mutants
    • Dohmen RJ, Wu P, Varshavsky A. 1994. Heat-inducible degron: A method for constructing temperature-sensitive mutants. Science 263: 1273-1276. (Pubitemid 24107546)
    • (1994) Science , vol.263 , Issue.5151 , pp. 1273-1276
    • Dohmen, R.J.1    Wu, P.2    Varshavsky, A.3
  • 15
    • 0037134913 scopus 로고    scopus 로고
    • ERG6 and PDR5 regulate small lipophilic drug accumulation in yeast cells via distinct mechanisms
    • DOI 10.1016/S0014-5793(02)02818-1, PII S0014579302028181
    • Emter R, Heese-Peck A, Kralli A. 2002. ERG6 and PDR5 regulate small lipophilic drug accumulation in yeast cells via distinct mechanisms. FEBS Lett 521: 57-61. (Pubitemid 34628458)
    • (2002) FEBS Letters , vol.521 , Issue.1-3 , pp. 57-61
    • Emter, R.1    Heese-Peck, A.2    Kralli, A.3
  • 16
    • 0031001382 scopus 로고    scopus 로고
    • A34.5, a nonessential component of yeast RNA polymerase I, cooperates with subunit A14 and DNA topoisomerase I to produce a functional rRNA synthesis machine
    • Gadal O, Mariotte-Labarre S, Chedin S, Quemeneur E, Carles C, Sentenac A, Thuriaux P. 1997. A34.5, a nonessential component of yeast RNA polymerase I, cooperates with subunit A14 and DNA topoisomerase I to produce a functional rRNA synthesis machine. Mol Cell Biol 17: 1787-1795. (Pubitemid 27133263)
    • (1997) Molecular and Cellular Biology , vol.17 , Issue.4 , pp. 1787-1795
    • Gadal, O.1    Mariotte-Labarre, S.2    Chedin, S.3    Quemeneur, E.4    Carles, C.5    Sentenac, A.6    Thuriaux, P.7
  • 17
    • 0023368541 scopus 로고
    • Genetic manipulation of centromere function
    • Hill A, Bloom K. 1987. Genetic manipulation of centromere function. Mol Cell Biol 7: 2397-2405.
    • (1987) Mol Cell Biol , vol.7 , pp. 2397-2405
    • Hill, A.1    Bloom, K.2
  • 18
    • 0035671033 scopus 로고    scopus 로고
    • MMS1 protects against replication-dependent DNA damage in Saccharomyces cerevisiae
    • Hryciw T, Tang M, Fontanie T, Xiao W. 2002. MMS1 protects against replication-dependent DNA damage in Saccharomyces cerevisiae. Mol Genet Genomics 266: 848-857.
    • (2002) Mol Genet Genomics , vol.266 , pp. 848-857
    • Hryciw, T.1    Tang, M.2    Fontanie, T.3    Xiao, W.4
  • 19
    • 0021471049 scopus 로고
    • Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae
    • Johnston M, Davis RW. 1984. Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae. Mol Cell Biol 4: 1440-1448.
    • (1984) Mol Cell Biol , vol.4 , pp. 1440-1448
    • Johnston, M.1    Davis, R.W.2
  • 20
    • 0343924289 scopus 로고    scopus 로고
    • Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters
    • Kadosh D, Struhl K. 1997. Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters. Cell 89: 365-371.
    • (1997) Cell , vol.89 , pp. 365-371
    • Kadosh, D.1    Struhl, K.2
  • 21
    • 0029049969 scopus 로고
    • SCT1 mutants suppress the camptothecin sensitivity of yeast cells expressing wild-type DNA topoisomerase I
    • Kauh EA, Bjornsti MA. 1995. SCT1 mutants suppress the camptothecin sensitivity of yeast cells expressing wild-type DNA topoisomerase I. Proc Natl Acad Sci 92: 6299-6303.
    • (1995) Proc Natl Acad Sci , vol.92 , pp. 6299-6303
    • Kauh, E.A.1    Bjornsti, M.A.2
  • 23
    • 0024338961 scopus 로고
    • Function of DNA topoisomerases as replication. Swivels in saccharomyces cerevisiae
    • DOI 10.1016/0022-2836(89)90387-2
    • Kim RA, Wang JC. 1989. Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae. J Mol Biol 208: 257-267. (Pubitemid 19199905)
    • (1989) Journal of Molecular Biology , vol.208 , Issue.2 , pp. 257-267
    • Kim, R.A.1    Wang, J.C.2
  • 24
    • 33847747460 scopus 로고    scopus 로고
    • Genome-wide analysis of cellular response to bacterial genotoxin CdtB in yeast
    • DOI 10.1128/IAI.01321-06
    • Kitagawa T, Hoshida H, Akada R. 2007. Genome-wide analysis of cellular response to bacterial genotoxin CdtB in yeast. Infect Immun 75: 1393-1402. (Pubitemid 46385833)
    • (2007) Infection and Immunity , vol.75 , Issue.3 , pp. 1393-1402
    • Kitagawa, T.1    Hoshida, H.2    Akada, R.3
  • 25
    • 0030941339 scopus 로고    scopus 로고
    • Copper-specific transcriptional repression of yeast genes encoding critical components in the copper transport pathway
    • DOI 10.1074/jbc.272.25.15951
    • Labbe S, Zhu Z, Thiele DJ. 1997. Copper-specific transcriptional repression of yeast genes encoding critical components in the copper transport pathway. J Biol Chem 272: 15951-15958. (Pubitemid 27265576)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.25 , pp. 15951-15958
    • Labbe, S.1    Zhu, Z.2    Thiele, D.J.3
  • 27
    • 0035029153 scopus 로고    scopus 로고
    • Tumor cell death induced by topoisomerase-targeting drugs
    • DOI 10.1146/annurev.pharmtox.41.1.53
    • Li TK, Liu LF. 2001. Tumor cell death induced by topoisomerase-targeting drugs. Annu Rev Pharmacol Toxicol 41: 53-77. (Pubitemid 32385882)
    • (2001) Annual Review of Pharmacology and Toxicology , vol.41 , pp. 53-77
    • Li, T.-K.1    Liu, L.F.2
  • 28
    • 68249125048 scopus 로고    scopus 로고
    • Choreography of recombination proteins during the DNA damage response
    • Lisby M, Rothstein R. 2009. Choreography of recombination proteins during the DNA damage response. DNA Repair 8: 1068-1076.
    • (2009) DNA Repair , vol.8 , pp. 1068-1076
    • Lisby, M.1    Rothstein, R.2
  • 32
    • 0036276974 scopus 로고    scopus 로고
    • Synthetic dosage lethality
    • DOI 10.1016/S0076-6879(02)50971-X
    • Measday V, Hieter P. 2002. Synthetic dosage lethality. Methods Enzymol 350: 316-326. (Pubitemid 34619499)
    • (2002) Methods in Enzymology , vol.350 , pp. 316-326
    • Measday, V.1    Hieter, P.2
  • 33
    • 0030962069 scopus 로고    scopus 로고
    • Alterations in the catalytic activity of yeast DNA topoisomerase I result in cell cycle arrest and cell death
    • DOI 10.1074/jbc.272.19.12801
    • Megonigal MD, Fertala J, Bjornsti MA. 1997. Alterations in the catalytic activity of yeast DNA topoisomerase I result in cell cycle arrest and cell death. J Biol Chem 272: 12801-12808. (Pubitemid 27203381)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.19 , pp. 12801-12808
    • Megonigal, M.D.1    Fertala, J.2    Bjornsti, M.-A.3
  • 34
    • 68249116573 scopus 로고    scopus 로고
    • DNA end resection:Many nucleases make light work
    • Mimitou EP, Symington LS. 2009. DNA end resection:Many nucleases make light work. DNA Repair 8: 983-995.
    • (2009) DNA Repair , vol.8 , pp. 983-995
    • Mimitou, E.P.1    Symington, L.S.2
  • 35
    • 0000536643 scopus 로고
    • DNA topoisomerase-targeting antitumor drugs can be studied in yeast
    • Nitiss J, Wang JC. 1988. DNA topoisomerase-targeting antitumor drugs can be studied in yeast. Proc Natl Acad Sci 85: 7501-7505.
    • (1988) Proc Natl Acad Sci , vol.85 , pp. 7501-7505
    • Nitiss, J.1    Wang, J.C.2
  • 36
    • 33644778778 scopus 로고    scopus 로고
    • A DNA integrity network in the yeast Saccharomyces cerevisiae
    • DOI 10.1016/j.cell.2005.12.036, PII S0092867406001188
    • Pan X, Ye P, Yuan DS, Wang X, Bader JS, Boeke JD. 2006. A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 124: 1069-1081. (Pubitemid 43344244)
    • (2006) Cell , vol.124 , Issue.5 , pp. 1069-1081
    • Pan, X.1    Ye, P.2    Yuan, D.S.3    Wang, X.4    Bader, J.S.5    Boeke, J.D.6
  • 38
    • 0032896662 scopus 로고    scopus 로고
    • MCM21 and MCM22, two novel genes of the yeast Saccharomyces cerevisiae are required for chromosome transmission
    • DOI 10.1046/j.1365-2958.1999.01179.x
    • Poddar A, Roy N, Sinha P. 1999. MCM21 and MCM22, two novel genes of the yeast Saccharomyces cerevisiae are required for chromosome transmission. Mol Microbiol 31: 349-360. (Pubitemid 29012173)
    • (1999) Molecular Microbiology , vol.31 , Issue.1 , pp. 349-360
    • Poddar, A.1    Roy, N.2    Sinha, P.3
  • 39
    • 0034871092 scopus 로고    scopus 로고
    • Pathways for repair of topoisomerase I covalent complexes in Saccharomyces cerevisiae
    • DOI 10.1046/j.1365-2443.2001.00452.x
    • Pouliot JJ, Robertson CA, Nash HA. 2001. Pathways for repair of topoisomerase I covalent complexes in Saccharomyces cerevisiae. Genes Cells 6: 677-687. (Pubitemid 32791679)
    • (2001) Genes to Cells , vol.6 , Issue.8 , pp. 677-687
    • Pouliot, J.J.1    Robertson, C.A.2    Nash, H.A.3
  • 40
    • 63649086486 scopus 로고    scopus 로고
    • The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins
    • Raiborg C, Stenmark H. 2009. The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins. Nature 458: 445-452.
    • (2009) Nature , vol.458 , pp. 445-452
    • Raiborg, C.1    Stenmark, H.2
  • 41
    • 33644785887 scopus 로고    scopus 로고
    • Genetic analysis of Saccharomyces cerevisiae H2A serine 129 mutant suggests a functional relationship between H2A and the sister-chromatid cohesion partners Csm3-Tof1 for the repair of topoisomerase I-induced DNA damage
    • DOI 10.1534/genetics.105.046128
    • Redon C, Pilch DR, Bonner WM. 2006. Genetic analysis of Saccharomyces cerevisiae H2A serine 129 mutant suggests a functional relationship between H2A and the sister-chromatid cohesion partners Csm3-Tof1 for the repair of topoisomerase I-induced DNA damage. Genetics 172: 67-76. (Pubitemid 43345473)
    • (2006) Genetics , vol.172 , Issue.1 , pp. 67-76
    • Redon, C.1    Pilch, D.R.2    Bonner, W.M.3
  • 42
    • 0030973427 scopus 로고    scopus 로고
    • Camptothecin sensitivity is mediated by the pleiotropic drug resistance network in yeast
    • DOI 10.1074/jbc.272.18.12091
    • Reid RJ, Kauh EA, Bjornsti MA. 1997. Camptothecin sensitivity is mediated by the pleiotropic drug resistance network in yeast. J Biol Chem 272: 12091-12099. (Pubitemid 27202789)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.18 , pp. 12091-12099
    • Reid, R.J.D.1    Kauh, E.A.2    Bjornsti, M.-A.3
  • 43
    • 0036270546 scopus 로고    scopus 로고
    • Cloning-free genome alterations in Saccharomyces cerevisiae using adaptamer-mediated PCR
    • DOI 10.1016/S0076-6879(02)50968-X
    • Reid R, Lisby M, Rothstein R. 2002. Cloning-free genome alterations in Saccharomyce cerevisiae using adaptamer-mediated PCR. Methods Enzymol 350: 258-277. (Pubitemid 34619496)
    • (2002) Methods in Enzymology , vol.350 , pp. 258-277
    • Reid, R.J.D.1    Lisby, M.2    Rothstein, R.3
  • 44
    • 61849137184 scopus 로고    scopus 로고
    • Chromosome-scale genetic mapping using a set of 16 conditionally stable Saccharomyces cerevisiae chromosomes
    • Reid RJ, Sunjevaric I, Voth WP, Ciccone S, Du W, Olsen AE, Stillman DJ, Rothstein R. 2008. Chromosome-scale genetic mapping using a set of 16 conditionally stable Saccharomyces cerevisiae chromosomes. Genetics 180: 1799-1808.
    • (2008) Genetics , vol.180 , pp. 1799-1808
    • Reid, R.J.1    Sunjevaric, I.2    Voth, W.P.3    Ciccone, S.4    Du, W.5    Olsen, A.E.6    Stillman, D.J.7    Rothstein, R.8
  • 45
    • 77952119807 scopus 로고    scopus 로고
    • The Rpd3L HDAC complex is essential for the heat stress response in yeast
    • Ruiz-Roig C, Vieitez C, Posas F, de Nadal E. 2010. The Rpd3L HDAC complex is essential for the heat stress response in yeast. Mol Microbiol 76: 1049-1062.
    • (2010) Mol Microbiol , vol.76 , pp. 1049-1062
    • Ruiz-Roig, C.1    Vieitez, C.2    Posas, F.3    De Nadal, E.4
  • 46
    • 0024799254 scopus 로고
    • High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier
    • DOI 10.1007/BF00340712
    • Schiestl RH, Gietz RD. 1989. High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr Genet 16: 339-346. (Pubitemid 20034019)
    • (1989) Current Genetics , vol.16 , Issue.5-6 , pp. 339-346
    • Schiestl, R.H.1    Gietz, R.D.2
  • 49
    • 0025137506 scopus 로고
    • Mitotic chromosome transmission fidelity mutants in Saccharomyces cerevisiae
    • Spencer F, Gerring SL, Connelly C, Hieter P. 1990. Mitotic chromosome transmission fidelity mutants in Saccharomyces cerevisiae. Genetics 124: 237-249. (Pubitemid 20066094)
    • (1990) Genetics , vol.124 , Issue.2 , pp. 237-249
    • Spencer, F.1    Gerring, S.L.2    Connelly, C.3    Hieter, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.