Culture independent analyses and wine fermentation: An overview of achievements 10 years after first application

Annals of Microbiology

Volumn 61, Issue 1, 2011, Pages 17-23

  Cocolin, Luca ^a   Campolongo, Simona ^a   Alessandria, Valentina ^a   Dolci, Paola ^a   Rantsiou, Kalliopi ^a  

^a UNIVERSITY OF TURIN   (Italy)

Author keywords

Culture independent method; Fermentation dynamic; Microbial ecology; PCR DGGE; Wine fermentation

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 79952006556     PISSN: 15904261     EISSN: 18692044     Source Type: Journal    
DOI: 10.1007/s13213-010-0076-6     Document Type: Review

References (30)

1. I Andorrà S Landi A Mas JM Guillamom B Esteve-Zarzoso 2008 Effect of oenological practices on microbial populations using culture-independent techniques Food Microbiol 25 849 856 10.1016/j.fm.2008.05.005 18721672
2. Andorrà I, Landi S, Mas A, Esteve-Zarzoso B, Guillamom JM (2009) Effect of fermentation temperature on microbial population evolution using culture-independent and dependent techniques. Food Res Int 43:773-779. doi: 10.1016/j.foodres.2009.11.014
3. JA Barnett MA Delaney E Jones AB Magson B Winch 1972 The numbers of yeasts associated with wine grapes of Bordeaux Arch Microbiol 83 52 55
4. B Bottari D Ercolini M Gatti E Neviani 2006 Application of FISH technology for microbiological analysis: current state and prospects Appl Microbiol Biotechnol 73 485 494 1:CAS:528:DC%2BD2sXot1Cr 10.1007/s00253-006- 0615-z 17051413 (Pubitemid 350262625)
5. L Cocolin DA Mills 2003 Wine yeast inhibition by sulfur dioxide: a comparison of culture-dependent and independent methods Am J Enol Vitic 54 125 130 1:CAS:528:DC%2BD3sXlt12jtLk%3D (Pubitemid 36689428)
6. L Cocolin LF Bisson DA Mills 2000 Direct profiling of the yeast dynamics in wine fermentations FEMS Microbiol Lett 189 81 87 1:CAS:528: DC%2BD3cXltVOmu70%3D 10.1111/j.1574-6968.2000.tb09210.x 10913870 (Pubitemid 30456251)
7. L Cocolin A Heisey DA Mills 2001 Direct identification of the indigenous yeasts in commercial wine fermentations Am J Enol Vitic 52 49 53 1:CAS:528:DC%2BD3MXmtVyrtL4%3D (Pubitemid 32696290)
8. L Cocolin M Manzano S Rebecca G Comi 2002 Monitoring of yeast population changes during continuous wine fermentation by molecular methods Am J Enol Vitic 53 24 27 (Pubitemid 34553906)
9. L Cocolin K Rantsiou L Iacumin R Zironi G Comi 2004 Molecular detection and identification of Brettanomyces/Dekkera bruxellensis and Brettanomyces/Dekkera anomalus in spoiled wines Appl Environ Microbiol 70 1347 1355 1:CAS:528:DC%2BD2cXisVKjtbk%3D 10.1128/AEM.70.3.1347-1355.2004 15006752 (Pubitemid 38365112)
10. I Dahllof H Baillie S Kjelleberg 2000 rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity Appl Environ Microbiol 66 3376 3380 1:CAS:528:DC%2BD3cXlsFarsrY%3D 10.1128/AEM.66.8.3376-3380.2000 10919794 (Pubitemid 30624579)
11. E Di Maro D Ercolini S Coppola 2007 Yeast dynamics during spontaneous wine fermentation of the Catalanesca grape Int J Food Microbiol 117 201 210 10.1016/j.ijfoodmicro.2007.04.007 17512625 (Pubitemid 46813171)
12. Donèche BJ (1993) Botritized wines. In: Fleet GH (ed) Wine microbiology and biotechnology. Harwood, New York, pp 327-351
13. DJ Erasmus GK van der Merwe HJJ van Vuuren 2003 Genome-wide expression analyses: metabolic adaptation of Saccharomyces cerevisiae to high sugar stress FEMS Yeast Res 3 375 399 1:CAS:528:DC%2BD3sXjs1eksLw%3D 10.1016/S1567-1356(02) 00203-9 12748050 (Pubitemid 36570317)
14. D Ercolini 2004 PCR-DGGE fingerprinting: novel trategies for detection of microbes in food J Microbiol Methods 56 297 314 1:CAS:528:DC%2BD2cXht1yktbc%3D 10.1016/j.mimet.2003.11.006 14967221 (Pubitemid 38210334)
15. Fleet GH (1993) Wine microbiology and biotechnology. Harwood, New York
16. P Hugenholtz BM Goebel NR Pace 1998 Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity J Bacteriol 180 4765 4774 1:CAS:528:DyaK1cXmt1Sgu7k%3D 9733676 (Pubitemid 28429361)
17. I Lopez F Ruiz-Larrea L Cocolin E Orr T Phister M Marshall J VanderGheynst DA Mills 2003 Design and evaluation of PCR primers for analysis of bacterial populations in wine by denaturing gradient gel electrophoresis Appl Environ Microbiol 69 6801 6807 1:CAS:528:DC%2BD3sXptVyktb0%3D 10.1128/AEM.69.11.6801-6807.2003 14602643 (Pubitemid 37420220)
18. M Manzano L Cocolin B Longo G Comi 2004 PCR-DGGE differentiation of strains of Saccharomyces sensu stricto Antonie van Leeuwenhoek 85 23 27 1:CAS:528:DC%2BD2cXjs1GhsL8%3D 10.1023/B:ANTO.0000020270.44019.39 15031660 (Pubitemid 38461034)
19. M Manzano L Cocolin L Iacumin C Cantoni G Comi 2005 A PCR-TGGE (temperature gradient gel electrophoresis) technique to assess differentiation among enological Saccharomyces cerevisiae strains Int J Food Microbiol 101 333 339 1:CAS:528:DC%2BD2MXltVeiu7o%3D 10.1016/j.ijfoodmicro.2004.10.049 15925714 (Pubitemid 40733502)
20. DA Mills E Johannsen L Cocolin 2002 Yeast diversity and persistence in botrytis-affected wine fermentations Appl Environ Microbiol 68 4884 4893 1:CAS:528:DC%2BD38XnvFCltb0%3D 10.1128/AEM.68.10.4884-4893.2002 12324335 (Pubitemid 35154796)
21. G Muyzer K Smalla 1998 Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology Antonie van Leeuwenhoek 73 127 141 1:CAS:528: DyaK1cXjsVaqtbs%3D 10.1023/A:1000669317571 9602286 (Pubitemid 28209906)
22. AA Nisiotou AE Spiropoulos G-JE Nychas 2007 Yeast comminuty structures and dynamics in healthy and Botrytis-affected grape must fermentation Appl Environ Microbiol 73 6705 6713 1:CAS:528:DC%2BD2sXhtlSksLvI 10.1128/AEM.01279-07 17766453 (Pubitemid 350076788)
23. NR Pace 1997 A molecular view of microbial diversity and the biosphese Science 276 734 740 1:CAS:528:DyaK2sXivFOltLc%3D 10.1126/science.276.5313.734 9115194 (Pubitemid 27199842)
24. CJ Prakitchaiwattana GH Fleet GM Heard 2004 Application and evaluation of denaturing gradient gel electrophoresis to analyse the yeast ecology of wine grapes FEMS Yeast Res 4 865 877 1:CAS:528:DC%2BD2cXmvFCls7k%3D 10.1016/j.femsyr.2004.05.004 15450194 (Pubitemid 39144378)
25. Rantsiou K, Campolongo S, Rolle L, Cocolin L (2009) Yeast populations dynamics in natural and inoculated sweet wine fermentations. In: Proceedings of the 60th Annual Meeting of the American Society for Viticulture and Enology, Napa, CA, 23-26 June 2009
26. V Renouf M Falcou C Miot-Sertier MC Perello G De Revel A Lonvaud-Funel 2006 Interactions between Brettanomyces bruxellensis and other yeast species during the initial stages of winemaking J Appl Microbiol 100 1208 1219 1:STN:280:DC%2BD28zns1Cgsg%3D%3D 10.1111/j.1365-2672.2006.02959.x 16696668 (Pubitemid 43725685)
27. V Renouf O Classe C Miot-Sertier A Lonvaud-Funel 2006 Lactic acid bacteria evolution during winemaking: use of rpoB gene as a target for PCR-DGGE analysis Food Microbiol 23 136 145 1:CAS:528:DC%2BD2MXntVGju7w%3D 10.1016/j.fm.2005.01.019 16942997 (Pubitemid 41074789)
28. M Sipiczki 2003 Candida zemplinina sp. nov., an osmotolerant and psychrotolerant yeast that ferments sweet botrytized wines Int J Syst Evol Microbiol 53 2079 2083 1:CAS:528:DC%2BD2cXhtF2mtw%3D%3D 10.1099/ijs.0.02649-0 14657149 (Pubitemid 37483877)
29. R Urso K Rantsiou P Dolci L Rolle G Comi L Cocolin 2008 Yeast biodiversity and dynamics during sweet wine production as determined by molecular methods FEMS Yeast Res 8 1053 1062 1:CAS:528:DC%2BD1cXhtlyqsr3E 10.1111/j.1567-1364.2008.00364.x 18341578
30. A Xufre H Albergaria J Inacio I Spencer-Martins F Girio 2006 Application of fluorescence in situ hybridization (FISH) to the analysis of yeast population dynamics in winery and laboratory grape must fermentations Int J Food Microbiol 108 376 384 1:CAS:528:DC%2BD28Xjs1Wms7s%3D 16504329