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Volumn 83, Issue 3, 2011, Pages 532-539

Sequencing and phylogenetic analysis of the coding region of six common rotavirus strains: Evidence for intragenogroup reassortment among co-circulating G1P[8] and G2P[4] strains from the United States

Author keywords

DS 1 like rotaviruses; Evolution; Genome sequencing; United States of America; Wa like rotaviruses

Indexed keywords

ARTICLE; CHILD; COMPUTER ANALYSIS; DIARRHEA; GENE SEQUENCE; GENETIC CODE; GENETIC REASSORTMENT; GENETIC VARIABILITY; HOSPITALIZATION; HUMAN; IMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; ROTAVIRUS; UNITED STATES; VACCINATION; VIRAL GENETICS; VIRUS STRAIN;

EID: 78851469247     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21977     Document Type: Article
Times cited : (33)

References (41)
  • 1
    • 24644435390 scopus 로고    scopus 로고
    • Isolation and molecular characterization of a naturally occurring non-structural protein 5 (NSP5) gene reassortant of group A rotavirus of serotype G2P[4] with a long RNA pattern
    • Ahmed K, Nakagomi T, Nakagomi O. 2005. Isolation and molecular characterization of a naturally occurring non-structural protein 5 (NSP5) gene reassortant of group A rotavirus of serotype G2P[4] with a long RNA pattern. J Med Virol 77: 323-330.
    • (2005) J Med Virol , vol.77 , pp. 323-330
    • Ahmed, K.1    Nakagomi, T.2    Nakagomi, O.3
  • 5
    • 69749125952 scopus 로고    scopus 로고
    • Genetic heterogeneity in human G6P[14] rotavirus strains detected in Hungary suggests independent zoonotic origin
    • Bányai K, Martella V, Molnár P, Mihály I, Van Ranst M, Matthijnssens J. 2009d. Genetic heterogeneity in human G6P[14] rotavirus strains detected in Hungary suggests independent zoonotic origin. J Infect 59: 213-215.
    • (2009) J Infect , vol.59 , pp. 213-215
    • Bányai, K.1    Martella, V.2    Molnár, P.3    Mihály, I.4    Van Ranst, M.5    Matthijnssens, J.6
  • 9
    • 34548407520 scopus 로고    scopus 로고
    • Fields virology
    • In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Philadelphia: Lippincott Williams & Wilkins/Wolters Kluwer..
    • Estes MK, Kapikian AZ. 2007. Rotaviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology. Philadelphia: Lippincott Williams & Wilkins/Wolters Kluwer. pp. 1917-1974.
    • (2007) Rotaviruses , pp. 1917-1974
    • Estes, M.K.1    Kapikian, A.Z.2
  • 12
    • 0033942340 scopus 로고    scopus 로고
    • Surveillance of rotavirus strains in the United States: Identification of unusual strains. The National Rotavirus Strain Surveillance System collaborating laboratories
    • Griffin DD, Kirkwood CD, Parashar UD, Woods PA, Bresee JS, Glass RI, Gentsch JR. 2000. Surveillance of rotavirus strains in the United States: Identification of unusual strains. The National Rotavirus Strain Surveillance System collaborating laboratories. J Clin Microbiol 38: 2784-2787.
    • (2000) J Clin Microbiol , vol.38 , pp. 2784-2787
    • Griffin, D.D.1    Kirkwood, C.D.2    Parashar, U.D.3    Woods, P.A.4    Bresee, J.S.5    Glass, R.I.6    Gentsch, J.R.7
  • 13
    • 3342893016 scopus 로고    scopus 로고
    • One-year survey of astrovirus infection in children with gastroenteritis in a large hospital in Hungary: Occurrence and genetic analysis of astroviruses
    • Jakab F, Meleg E, Bányai K, Melegh B, Tímár L, Péterfai J, Szucs G. 2004. One-year survey of astrovirus infection in children with gastroenteritis in a large hospital in Hungary: Occurrence and genetic analysis of astroviruses. J Med Virol 74: 71-77.
    • (2004) J Med Virol , vol.74 , pp. 71-77
    • Jakab, F.1    Meleg, E.2    Bányai, K.3    Melegh, B.4    Tímár, L.5    Péterfai, J.6    Szucs, G.7
  • 14
    • 0028120022 scopus 로고
    • Recurrent circulation of single nonstructural gene substitution reassortants among human rotaviruses with a short RNA pattern
    • Kaga E, Nakagomi O. 1994. Recurrent circulation of single nonstructural gene substitution reassortants among human rotaviruses with a short RNA pattern. Arch Virol 136: 63-71.
    • (1994) Arch Virol , vol.136 , pp. 63-71
    • Kaga, E.1    Nakagomi, O.2
  • 15
    • 0036889351 scopus 로고    scopus 로고
    • Frequent reassortment may explain the genetic heterogeneity of rotaviruses: Analysis of Finnish rotavirus strains
    • Manula M, von Bonsdorf CH. 2002. Frequent reassortment may explain the genetic heterogeneity of rotaviruses: Analysis of Finnish rotavirus strains. J Virol 76: 11793-11800.
    • (2002) J Virol , vol.76 , pp. 11793-11800
    • Manula, M.1    von Bonsdorf, C.H.2
  • 17
    • 0025124525 scopus 로고
    • Sequence analysis of gene 11 equivalents from "short" and "super short" strains of rotavirus
    • Matsui SM, Mackow ER, Matsuno S, Paul PS, Greenberg HB. 1990. Sequence analysis of gene 11 equivalents from "short" and "super short" strains of rotavirus. J Virol 64: 120-124.
    • (1990) J Virol , vol.64 , pp. 120-124
    • Matsui, S.M.1    Mackow, E.R.2    Matsuno, S.3    Paul, P.S.4    Greenberg, H.B.5
  • 19
  • 22
    • 54449092749 scopus 로고    scopus 로고
    • Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin
    • Matthijnssens J, Rahman M, Van Ranst M. 2008c. Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin. J Gen Virol 89: 2630-2635.
    • (2008) J Gen Virol , vol.89 , pp. 2630-2635
    • Matthijnssens, J.1    Rahman, M.2    Van Ranst, M.3
  • 28
    • 0025987528 scopus 로고
    • Molecular evidence for naturally occurring single VP7 gene substitution reassortant between human rotaviruses belonging to two different genogroups
    • Nakagomi O, Nakagomi T. 1991. Molecular evidence for naturally occurring single VP7 gene substitution reassortant between human rotaviruses belonging to two different genogroups. Arch Virol 119: 67-81.
    • (1991) Arch Virol , vol.119 , pp. 67-81
    • Nakagomi, O.1    Nakagomi, T.2
  • 29
    • 0036906992 scopus 로고    scopus 로고
    • Genomic relationships among rotaviruses recovered from various animal species as revealed by RNA-RNA hybridization assays
    • Nakagomi O, Nakagomi T. 2002. Genomic relationships among rotaviruses recovered from various animal species as revealed by RNA-RNA hybridization assays. Res Vet Sci 73: 207-214.
    • (2002) Res Vet Sci , vol.73 , pp. 207-214
    • Nakagomi, O.1    Nakagomi, T.2
  • 30
    • 0024730349 scopus 로고
    • Identification of rotavirus genogroups by RNA-RNA hybridization
    • Nakagomi O, Nakagomi T, Akatani K, Ikegami N. 1989. Identification of rotavirus genogroups by RNA-RNA hybridization. Mol Cell Probes 3: 251-261.
    • (1989) Mol Cell Probes , vol.3 , pp. 251-261
    • Nakagomi, O.1    Nakagomi, T.2    Akatani, K.3    Ikegami, N.4
  • 31
    • 0036905710 scopus 로고    scopus 로고
    • Molecular characterization of serotype G2 and G3 human rotavirus strains that have an apparently identical electropherotype of the short RNA pattern
    • Nakagomi T, Gentsch JR, Das BK, Kumar R, Bhan MK, Glass RI, Nakagomi O. 2002. Molecular characterization of serotype G2 and G3 human rotavirus strains that have an apparently identical electropherotype of the short RNA pattern. Arch Virol 147: 2187-2195.
    • (2002) Arch Virol , vol.147 , pp. 2187-2195
    • Nakagomi, T.1    Gentsch, J.R.2    Das, B.K.3    Kumar, R.4    Bhan, M.K.5    Glass, R.I.6    Nakagomi, O.7
  • 32
    • 0030004221 scopus 로고    scopus 로고
    • Multiple-gene rotavirus reassortants responsible for an outbreak of gastroenteritis in central and northern Australia
    • Palombo EA, Bugg HC, Masendycz PJ, Coulson BS, Barnes GL, Bishop RF. 1996. Multiple-gene rotavirus reassortants responsible for an outbreak of gastroenteritis in central and northern Australia. J Gen Virol 77: 1223-1227.
    • (1996) J Gen Virol , vol.77 , pp. 1223-1227
    • Palombo, E.A.1    Bugg, H.C.2    Masendycz, P.J.3    Coulson, B.S.4    Barnes, G.L.5    Bishop, R.F.6
  • 33
    • 34247581661 scopus 로고    scopus 로고
    • Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan
    • Phan TG, Khamrin P, Quang TD, Dey SK, Takanashi S, Okitsu S, Maneekarn N, Ushijima H. 2007. Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan. J Virol 81: 4645-4653.
    • (2007) J Virol , vol.81 , pp. 4645-4653
    • Phan, T.G.1    Khamrin, P.2    Quang, T.D.3    Dey, S.K.4    Takanashi, S.5    Okitsu, S.6    Maneekarn, N.7    Ushijima, H.8
  • 34
    • 70449623205 scopus 로고    scopus 로고
    • Molecular characteristics of German G8P[4] rotavirus strain GER1H-09 suggest that a genotyping and subclassification update is required for G8
    • Pietsch C, Petersen L, Patzer L, Liebert UG. 2009. Molecular characteristics of German G8P[4] rotavirus strain GER1H-09 suggest that a genotyping and subclassification update is required for G8. J Clin Microbiol 47: 3569-3576.
    • (2009) J Clin Microbiol , vol.47 , pp. 3569-3576
    • Pietsch, C.1    Petersen, L.2    Patzer, L.3    Liebert, U.G.4
  • 36
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15: 29-56.
    • (2005) Rev Med Virol , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 37
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 53249109344 scopus 로고    scopus 로고
    • Whole genome sequence and phylogenetic analyses reveal human rotavirus G3P[3] strains Ro1845 and HCR3A are examples of direct virion transmission of canine/feline rotaviruses to humans
    • Tsugawa T, Hoshino Y. 2008. Whole genome sequence and phylogenetic analyses reveal human rotavirus G3P[3] strains Ro1845 and HCR3A are examples of direct virion transmission of canine/feline rotaviruses to humans. Virology 380: 344-353.
    • (2008) Virology , vol.380 , pp. 344-353
    • Tsugawa, T.1    Hoshino, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.