Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan

Journal of Virology

Volumn 81, Issue 9, 2007, Pages 4645-4653

  Tung, Gia Phan ^a   Khamrin, Pattara ^a   Trinh, Duy Quang ^a   Dey, Shuvra Kanti ^a   Takanashi, Sayaka ^a   Okitsu, Shoko ^a   Maneekarn, Niwat ^b   Ushijima, Hiroshi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b Faculty of Medicine Chiang Mai University   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; VIRUS RNA;

ACUTE GASTROENTERITIS; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; CHILD; GENOTYPE; GROUP A ROTAVIRUS; HUMAN; JAPAN; MAJOR CLINICAL STUDY; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; ROTAVIRUS; STRAIN IDENTIFICATION; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS INFECTION; VIRUS ISOLATION; VIRUS TYPING;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BASE SEQUENCE; CHILD; CLUSTER ANALYSIS; FECES; GASTROENTERITIS; GENOTYPE; HUMANS; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVALENCE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

ROTAVIRUS; ROTAVIRUS A;

EID: 34247581661     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.02342-06     Document Type: Article

References (36)

1. Arista, S., G. M. Giammanco, S. De Grazia, S. Ramirez, C. Lo Biundo, C. Colomba, A. Cascio, and V. Martella. 2006. Heterogeneity and temporal dynamics of evolution of G1 human rotaviruses in a settled population. J. Virol. 80:10724-10733.
2. Bernstein, D. I., and R. L. Ward. 2006. Rotarix: development of a live attenuated monovalent human rotavirus vaccine. Pediatr. Ann. 35:38-43.
3. Blackhall, J., R. Bellinzoni, N. Mattion, M. K. Estes, J. L. La Torre, and C. Magnusson. 1992. A bovine rotavirus serotype 1: serologic characterization of the virus and nucleotide sequence determination of the structural glycoprotein VP7 gene. Virology 189:833-837.
4. Coulson, B. S., and C. Kirkwood. 1991. Relation of VP7 amino acid sequence to monoclonal antibody neutralization of rotavirus and rotavirus monotype. J. Virol. 65:5968-5974.
5. Das, B. K., J. R. Gentsch, H. G. Cicirello, P. A. Woods, A. Gupta, M. Ramachandran, R. Kumar, M. K. Bhan, and R. I. Glass. 1994. Characterization of rotavirus strains from newborns in New Delhi, India. J. Clin. Microbiol. 32:1820-1822.
6. Diwakarla, C. S., and E. A. Palombo. 1999. Genetic and antigenic variation of capsid protein VP7 of serotype G1 human rotavirus isolates. J. Gen. Virol. 80:341-344.
7. Doan, L. T., S. Okitsum, O. Nishio, D. T. Pham, D. H. Nguyen, and H. Ushijima. 2003. Epidemiological features of rotavirus infection among hospitalized children with gastroenteristis in Ho Chi Minh City, Vietnam. J. Med. Virol. 69:588-594.
8. Estes, M. K. 1996. Rotavirus and their replication, p. 1625-1655. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed. Lippincott-Raven Press, Philadelphia, PA.
9. Gentsch, J. R., R. I. Glass, P. Woods, V. Gouvea, M. Gorziglia, J. Flores, B. K. Das, and M. K. Bhan. 1992. Identification of group A rotavirus gene 4 type by polymerase chain reaction. J. Clin. Microbiol. 30:1365-1373.
10. Iturriza-Gomara, M., G. Kang, and J. Gray. 2004. Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J. Clin. Virol. 31:259-265.
11. Jin, Q., R. L. Ward, D. R. Knowlton, Y. B. Gabbay, A. C. Linhares, R. Rappaport, P. A. Woods, R. I. Glass, and J. R. Gentsch. 1996. Divergence of VP7 genes of G1 rotaviruses isolated from infants vaccinated with reassortant rhesus rotaviruses. Arch. Virol. 141:2057-2076.
12. Kang, G., J. Green, C. I. Gallimore, and D. W. Brown. 2002. Molecular epidemiology of rotaviral infection in South Indian children with acute diarrhea from 1995-1996 to 1998-1999. J. Med. Virol. 67:101-105.
13. Kapikian, A. Z., Y. Hoshino, and R. M. Chanock. 2001. Rotaviruses, p. 1787-1833. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 4th ed. Lippincott-Raven Press, Philadelphia, PA.
14. Khamrin, P., N. Maneekarn, S. Peerakome, W. Chan-It, F. Yagyu, S. Okitsu, and H. Ushijima. Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain. Virology, in press.
15. Maneekarn, N., and H. Ushijima. 2000. Epidemiology of rotavirus infection in Thailand. Pediatr. Int. 42:415-421.
16. Martella, V., M. Ciarlet, K. Banyai, E. Lorusso, S. Arista, A. Lavazza, G. Pezzottì, N. Decaro, A. Cavalli, M. S. Lucente, M. Corrente, G. Elìa, M. Camero, M. Tempesta, and C. Buonavoglia. 2007. Identification of group A porcine rotavirus strains bearing a novel VP4 (P) genotype in Italian swine herds. J. Clin. Microbiol. 45:577-580.
17. Mulholland, E. K. 2004. Global control of rotavirus disease. Adv. Exp. Med. Biol. 549:161-168.
18. Murray, C. J., and A. D. Lopez. 1997. Mortality by cause for eight regions of the world: global burden of disease study. Lancet 349:1269-1276.
19. Nishio, O., K. Matsui, T. Oka, H. Ushijima, A. Mubina, A. Dure-Samin, and S. Isomura. 2000. Rotavirus infection among infants with diarrhea in Pakistan. Pediatr. Int. 42:425-427.
20. Offit, P. A., and H. F. Clark. 2006. RotaTeq: a pentavalent bovine - human reassortant rotavirus vaccine. Pediatr. Ann. 35:29-34.
21. Okitsu-Negishi, S., T. A. Nguyen, T. G. Phan, and H. Ushijima. 2004. Molecular epidemiology of viral gastroenteritis in Asia. Pediatr. Int. 46:245-252.
22. Parashar, U. D., E. G. Hummelman, M. A. Miller, and R. I. Glass. 2003. Global illness and deaths caused by rotavirus disease in children. Emerg. Infect. Dis. 9:565-572.
23. Parashar, U. D., and R. I. Glass. 2006. Public health. Progress toward rotavirus vaccines. Science 12:851-852.
24. Phan, T. G., Q. D. Trinh, P. Khamrin, K. Kaneshi, Y. Ueda, S. Nakaya, S. Nishimura, K. Sugita, T. Nishimura, A. Yamamoto, S. Takanashi, F. Yagyu, S. Okitsu, and H. Ushijima. 2007. Emergence of new variant rotavirus G3 among infants and children with acute gastroenteritis in Japan during 2003-2004. Clin. Lab. 53:41-48.
25. Rahman, M., J. Matthijnssens, S. Nahar, G. Podder, D. A. Sack, T. Azim, and M. Van Ranst. 2005. Characterization of a novel P[25], G11 human group A rotavirus. J. Clin. Microbiol. 43:3208-3212.
26. Ruiz-Palacios, G. M., I. Perez-Schael, F. R. Velazquez, H. Abate, T. Breuer, S. C. Clemens, B. Cheuvart, F. Espinoza, P. Gillard, B. L. Innis, Y. Cervantes, A. C. Linhares, P. Lopez, M. Macias-Parra, E. Ortega-Barria, V. Richardson, D. M. Rivera-Medina, L. Rivera, B. Salinas, N. Pavia-Ruz, J. Salmeron, R. Ruttimann, J. C. Tinoco, P. Rubio, E. Nunez, M. L. Guerrero, J. P. Yarzabal, S. Damaso, N. Tornieporth, X. Saez-Llorens, R. F. Vergara, T. Vesikari, A. Bouckenooghe, R. Clemens, B. De Vos, M. O'Ryan, and Human Rotavirus Vaccine Study Group. 2006. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N. Engl. J. Med. 354:11-22.
27. Santos, N., C. C. Soares, E. M. Volotao, M. C. Albuguerque, and Y. Hoshino. 2003. Surveillance of rotavirus strains in Rio De Janeiro, Brazil, from 1997 to 1999. J. Clin. Microbiol. 41:3399-3402.
28. Santos, N., and Y. Hoshino. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 15:29-56.
29. Suzuki, H., T. Sakai, N. Tanabe, and N. Okabe. 2005. Peak rotavirus activity shifted from winter to early spring in Japan. Pediatr. Infect. Dis. J. 24:257-260.
30. Taniguchi, K., Y. Hoshino, K. Nishikawa, K. Y. Green, W. L. Maloy, Y. Morita, S. Urasawa, A. Z. Kapikian, R. M. Chanock, and M. Gorziglia. 1988. Cross-reactive and serotype-specific neutralization epitopes on VP7 of human rotavirus: nucleotide sequence analysis of antigenic mutants selected with monoclonal antibodies. J. Virol. 62:1870-1874.
31. Thapar, N., and I. R. Sanderson. 2004. Diarrhoea in children: an interface between developing and developed countries. Lancet 363:641-653.
32. Vesikari, T., A. Karvonen, L. Puustinen, S. Q. Zeng, E. D. Szakal, A. Delem, and B. De Vos. 2004. Efficacy of RIX4414 live attenuated human rotavirus vaccine in Finnish infants. Pediatr. Infect. Dis. J. 23:937-943.
33. Vesikari, T., D. O. Matson, P. Dennehy, P. Van Damme, M. Santosham, Z. Rodriguez, M. J. Dallas, J. F. Heyse, M. G. Goveia, S. B. Black, H. R. Shinefield, C. D. Christie, S. Ylitalo, R. F. Itzler, M. L. Coia, M. T. Onorato, B. A. Adeyi, G. S. Marshall, L. Gothefors, D. Campens, A. Karvonen, J. P. Watt, K. L. O'Brien, M. J. DiNubilem, H. F. Clark, J. W. Boslego, P. A. Offit, P. M. Heaton, and the Rotavirus Efficacy and Safety Trial (REST) Study Team. 2006. Safety and efficacy of a pentavalent human-bovine (WC3) reassortant rotavirus vaccine. N. Engl. J. Med. 354:23-33.
34. Yan, H., A. N. Tuan, T. G. Phan, S. Okitsu, L. Yan, and H. Ushijima. 2004. Development of RT-multiplex PCR assay for detection of adenovirus, group A and C rotaviruses in diarrheal fecal specimens from children in China. Kansenshogaku Zasshi 78:699-709.
35. Yoshinaga, M., T. G. Phan, A. T. Nguyen, H. Yan, H. Yagyu, S. Okitsu, W. E. G. Muller, and H. Ushijima. 2006. Changing distribution of group A rotavirus G-types and genetic analysis of G9 circulating in Japan. Arch. Virol. 151:183-192.
36. Zhou, Y., L. Li, S. Okitsu, N. Maneekarn, and H. Ushijima. 2003. Distribution of human rotaviruses, especially G9 strains, in Japan from 1996 to 2000. Microbiol. Immunol. 47:591-599.