Recommendations for the classification of group a rotaviruses using all 11 genomic RNA segments

Archives of Virology

Volumn 153, Issue 8, 2008, Pages 1621-1629

  Matthijnssens, Jelle ^a   Ciarlet, Max ^b   Rahman, Mustafizur ^a,c   Attoui, Houssam ^d   Bányai, Krisztián ^e   Estes, Mary K ^f   Gentsch, Jon R ^g   Iturriza Gómara, Miren ^h   Kirkwood, Carl D ⁱ   Martella, Vito ^j   Mertens, Peter P C ^d   Nakagomi, Osamu ^k   Patton, John T ^l   Ruggeri, Franco M ^m   Saif, Linda J ⁿ   Santos, Norma ^o   Steyer, Andrej ^p   Taniguchi, Koki ^q   Desselberger, Ulrich ^r   Van Ranst, Marc ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b MERCK RESEARCH LABORATORIES   (United States)

^c INTERNATIONAL CENTRE FOR DIARRHOEAL DISEASE RESEARCH   (Bangladesh)

^d INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

^e INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^f BAYLOR COLLEGE OF MEDICINE   (United States)

^g NATIONAL CENTER FOR IMMUNIZATION AND RESPIRATORY DISEASES   (United States)

^h PUBLIC HEALTH ENGLAND   (United Kingdom)

ⁱ ROYAL CHILDREN'S HOSPITAL   (Australia)

^j UNIVERSITY OF BARI   (Italy)

^k NAGASAKI UNIVERSITY   (Japan)

^l NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^m ISTITUTO SUPERIORE DI SANITÀ   (Italy)

ⁿ OHIO STATE UNIVERSITY   (United States)

^o FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^p UNIVERSITY OF LJUBLJANA   (Slovenia)

^q FUJITA HEALTH UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^r UNIVERSITY OF CAMBRIDGE   (United Kingdom)

more..

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; REVIEW; ROTAVIRUS; VIRUS GENOME;

GENOME, VIRAL; RNA, VIRAL; ROTAVIRUS;

ANIMALIA; ORTHOREOVIRUS; REOVIRIDAE; ROTAVIRUS; ROTAVIRUS A;

EID: 47549097712     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-008-0155-1     Document Type: Review

References (42)

1. Ball LA (2005) The universal taxonomy of viruses in theory and practice. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eight report of the International Committee on Taxonomy of Viruses. Elsevier, Academic Press, Amsterdam, Holland, pp 3-8
2. Banerjee I, Iturriza-Gómara M, Rajendran P, Primrose B, Ramani S, Gray JJ, Brown DW, Kang G (2007) Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India. J Med Virol 79:1768-1774
3. Ciarlet M, Liprandi F, Conner ME, Estes MK (2000) Species specificity and interspecies relatedness of NSP4 genetic groups by comparative NSP4 sequence analyses of animal rotaviruses. Arch Virol 145:371-383
4. Ciarlet M, Estes M (2002) Rotaviruses: basic biology, epidemiology and methodologies. In: Britton G (ed) Encyclopedia of environmental microbiology. Wiley, New York, pp 2573-2773
5. Cunliffe NA, Woods PA, Leite JP, Das BK, Ramachandran M, Bhan MK, Hart CA, Glass RI, Gentsch JR (1997) Sequence analysis of NSP4 gene of human rotavirus allows classification into two main genetic groups. J Med Virol 53:41-50
6. de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H (2004) Classification of papillomaviruses. Virology 324:17-27
7. Desselberger U, Wolleswinkel-van den Bosch J, Mrukowicz J, Rodrigo C, Giaquinto C, Vesikari T (2006) Rotavirus types in Europe and their significance for vaccination. Pediatr Infect Dis J 25:S30-41
8. Estes M, Kapikian A (2007) Rotaviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (eds) Fields virology, 5th edn. Kluwer Health/Lippincott, Williams and Wilkins, Philadelphia, pp 1917-1974
9. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Bányai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI (2005) Serotype diversity and reassortment between human and animal rotavirus strains: implications for rotavirus vaccine programs. J Infect Dis 192(Suppl 1):S146-159
10. Graham DY, Estes MK (1985) Proposed working serologic classification system for rotaviruses. Annales de l'Institut Pasteur de Virologie 136:5-12
11. Horie Y, Masamune O, Nakagomi O (1997) Three major alleles of rotavirus NSP4 proteins identified by sequence analysis. J Gen Virol 78:2341-2346
12. Ito H, Sugiyama M, Masubuchi K, Mori Y, Minamoto N (2001) Complete nucleotide sequence of a group A avian rotavirus genome and a comparison with its counterparts of mammalian rotaviruses. Virus Res 75:123-138
13. Iturriza Gómara M, Wong C, Blome S, Desselberger U, Gray J (2002) Molecular characterization of VP6 genes of human rotavirus isolates: correlation of genogroups with subgroups and evidence of independent segregation. J Virol 76:6596-6601
14. Khamrin P, Maneekarn N, Peerakome S, Yagyu F, Okitsu S, Ushijima H (2006) Molecular characterization of a rare G3P[3] human rotavirus reassortant strain reveals evidence for multiple human-animal interspecies transmissions. J Med Virol 78:986-994
15. Kirkwood CD, Palombo EA (1997) Genetic characterization of the rotavirus nonstructural protein, NSP4. Virology 236:258-265
16. Li DD, Duan ZJ, Zhang Q, Liu N, Xie ZP, Jiang B, Steele D, Jiang X, Wang ZS, Fang ZY (2008) Molecular characterization of unusual human G5P[6] rotaviruses identified in China. J Clin Virol 42:141-148
17. Matthijnssens J, Rahman M, Martella V, Xuelei Y, De Vos S, De Leener K, Ciarlet M, Buonavoglia C, Van Ranst M (2006) Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J Virol 80:3801-3810
18. Matthijnssens J, Rahman M, Yang X, Delbeke T, Arijs I, Kabue JP, Muyembe JJ, Van Ranst M (2006) G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J Clin Microbiol 44:1801-1809
19. Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo AE, Iturriza-Gómara M, Maes P, Patton JT, Rahman M, Van Ranst M (2008) Full genome-based classification of rotaviruses reveals common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204-3219
20. Maunula L, Von Bonsdorff CH (2002) Frequent reassortments may explain the genetic heterogeneity of rotaviruses: analysis of Finnish rotavirus strains. J Virol 76:11793-11800
21. Mertens PPC, Duncan R, Attoui H, Dermody TS (2005) Reoviridae. In: Fauquet C, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eight report of the International Committee on Taxonomy of Viruses. Elsevier, Amsterdam, pp 447-560
22. Mori Y, Borgan MA, Ito N, Sugiyama M, Minamoto N (2002) Sequential analysis of nonstructural protein NSP4s derived from Group A avian rotaviruses. Virus Res 89:145-151
23. Nakagomi O, Nakagomi T, Akatani K, Ikegami N (1989) Identification of rotavirus genogroups by RNA-RNA hybridization. Mol Cell Probes 3:251-261
24. Nakagomi O, Nakagomi T (1991) Genetic diversity and similarity among mammalian rotaviruses in relation to interspecies transmission of rotavirus. Arch Virol 120:43-55
25. Nakagomi T, Horie Y, Koshimura Y, Greenberg HB, Nakagomi O (1999) Isolation of a human rotavirus strain with a super-short RNA pattern and a new P2 subtype. J Clin Microbiol 37:1213-1216
26. Noel JS, Lee TW, Kurtz JB, Glass RI, Monroe SS (1995) Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J Clin Microbiol 33:797-801
27. Parashar UD, Hummelman EG, Bresee JS, Miller MA, Glass RI (2003) Global illness and deaths caused by rotavirus disease in children. Emerg Infect Dis 9:565-572
28. Parashar UD, Gibson CJ, Bresse JS, Glass RI (2006) Rotavirus and severe childhood diarrhea. Emerg Infect Dis 12:304-306
29. Park SH, Saif LJ, Jeong C, Lim GK, Park SI, Kim HH, Park SJ, Kim YJ, Jeong JH, Kang MI, Cho KO (2006) Molecular characterization of novel G5 bovine rotavirus strains. J Clin Microbiol 44:4101-4112
30. Parra GI, Bok K, Martinez M, Gomez JA (2004) Evidence of rotavirus intragenic recombination between two sublineages of the same genotype. J Gen Virol 85:1713-1716
31. Phan TG, Okitsu S, Maneekarn N, Ushijima H (2007) Genetic heterogeneity, evolution and recombination in emerging G9 rotaviruses. Infect Genet Evol 7:656-663
32. Phan TG, Okitsu S, Maneekarn N, Ushijima H (2007) Evidence of intragenic recombination in G1 rotavirus VP7 genes. J Virol 81:10188-10194
33. Rahman M, Matthijnssens J, Nahar S, Podder G, Sack DA, Azim T, Van Ranst M (2005) Characterization of a novel P[25], G11 human group a rotavirus. J Clin Microbiol 43:3208-3212
34. Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gómara M, Iftekharuddin N, Azim T, Van Ranst M (2007) Evolutionary history and global spread of the emerging g12 human rotaviruses. J Virol 81:2382-2390
35. Ramig RF, Ciarlet M, Mertens PPC, Dermody TS (2005) Rotavirus. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eight report of the International Committee on Taxonomy of Viruses. Elsevier, Amsterdam, pp 484-496
36. Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56
37. Schuffenecker I, Ando T, Thouvenot D, Lina B, Aymard M (2001) Genetic classification of "Sapporo-like viruses". Arch Virol 146:2115-2132
38. Small C, Barro M, Brown TL, Patton JT (2007) Genome heterogeneity of SA11 rotavirus due to reassortment with "O" agent. Virology 359:415-424
39. Soriano-Gabarro M, Mrukowicz J, Vesikari T, Verstraeten T (2006) Burden of rotavirus disease in European Union countries. Pediatr Infect Dis J 25:S7-S11
40. Suzuki Y, Gojobori T, Nakagomi O (1998) Intragenic recombinations in rotaviruses. FEBS Lett 427:183-187
41. Svensson L, Sheshberadaran H, Vesikari T, Norrby E, Wadell G (1987) Immune response to rotavirus polypeptides after vaccination with heterologous rotavirus vaccines (RIT 4237, RRV-1). J Gen Virol 68:1993-1999
42. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS (2006) Norovirus classification and proposed strain nomenclature. Virology 346:312-323