Genomic relationships among rotaviruses recovered from various animal species as revealed by RNA-RNA hybridization assays

Research in Veterinary Science

Volumn 73, Issue 3, 2002, Pages 207-214

  Nakagomi, O ^a   Nakagomi, T ^a  

^a AKITA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; GENOMIC RNA; NUCLEOTIDE; RNA POLYMERASE; VIRUS GLYCOPROTEIN; VIRUS HEMAGGLUTININ; VIRUS PROTEIN; VIRUS RNA;

CHILD; CORRELATION ANALYSIS; EXPERIMENTAL INFECTION; GENETIC REASSORTMENT; GENOME ANALYSIS; HETERODUPLEX ANALYSIS; HOST PATHOGEN INTERACTION; HOST RANGE; HUMAN; HUMAN ROTAVIRUS; INFANT; INTERMETHOD COMPARISON; INTERSPECIFIC RELATIONSHIP; MOLECULAR GENETICS; MOUSE; NEWBORN; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; REVIEW; RNA RNA HYBRIDIZATION; RNA VIRUS INFECTION; ROTAVIRUS; SPECIES DIFFERENCE; VIRUS CAPSID; VIRUS GENOME; VIRUS ISOLATION; VIRUS NEUTRALIZATION; VIRUS PATHOGENESIS; VIRUS TRANSMISSION;

ANIMALIA; HUMAN ROTAVIRUS A; MIRIDAE; RNA VIRUSES; ROTAVIRUS;

EID: 0036906992     PISSN: 00345288     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0034-5288(02)00097-8     Document Type: Review

References (66)

1. ADAMS, W. R. & KRAFT, L. M. (1963) Epizootic diarrhoea of infant mice: identification of the etiologic agent. Science 141, 359-360
2. BALL, J. M., TIAN, P., ZENG, C. Q.-Y., MORRIS, A. P. & ESTES, M. K. (1996) Age-dependent diarrhoea induced by a rotaviral nonstructural glycoprotein. Science 272, 101-104
3. BISHOP, R. F., DAVIDSON, G. P., HOLMES, I. H. & RUCK, B. J. (1973) Virus particles in epithelial cells of duodenal mucosa from children with acute non-bacterial gastroenteritis. Lancet 2, 1281-1283
4. BOHL, E. H., THEIL, K. W. & SAIF, L. J. (1984) Isolation and serotyping of porcine rotaviruses and antigenic comparison with other rotaviruses. Journal of Clinical Microbiology 19, 105-111
5. BRESEE, J. S., GLASS, R. I., IVANOFF, B. & GENTSCH, J. R. (1999) Current status and future priorities for rotavirus vaccine development, evaluation and implementation in developing countries. Vaccine 17, 2207-2222
6. BRIDGER, J. C. & BROWN, J. F. (1984) Antigenic and pathogenic relationships of three bovine rotaviruses and a porcine rotavirus. Journal of General Virology 65, 1151-1158
7. BRUSSOW, H. & SIDOTI, J. (1991) Antibody to serotype 8 rotavirus in Ecuadorian and German children. Epidemiology and Infection 106, 415-420
8. CLARK, H. F., OFFIT, P. A., ELLIS, R. W., EIDEN, J. J., KRAH, D., SHAW, A. R., PICHICHERO, M., TREANOR, J. J., BORIAN, F. E., BELL, L. M. & PLOTKIN, S. A. (1996) The development of multivalent bovine rotavirus (strain WC3) reassortant vaccine for infants. Journal of Infectious Diseases 174(Suppl. 1), 73-80
9. DAGENAIS, L., SCHWERS, A., PASTORET, P. & CHAPPUIS, G. (1981) Propagation of bovine rotavirus by dogs. Veterinary Record 109, 187
10. DAS, B. K., GENTSCH, J. R., HOSHINO, Y., ISHIDA, S., NAKAGOMI, O., BHAN, M. K., KUMAR, R. & GLASS, R. I. (1993a) Characterization of the G serotype and genogroup of New Delhi newborn rotaviruses strain 116E. Virology 197, 99-107
11. DAS, M., DUNN, S. J., WOODE, G. N., GREENBERG, H. B. & RAO, C. D. (1993b) Both surface proteins (VP4 and VP7) of an asymptomatic neonatal rotavirus strain (I321) have high levels of sequence identity with the homologous proteins of a serotype 10 bovine rotavirus. Virology 194, 374-379
12. DUNN, S. J., GREENBERG, H. B., WARD, R. L., NAKAGOMI, O., BURNS, J. W., VO, P. T., PAX, K. A., DAS, M., GOWDA, K. & RAO, C. D. (1993) Serotypic and genotypic characterization of human serotype 10 rotaviruses from asymptomatic neonates. Journal of Clinical Microbiology. 31, 165-169
13. ESTES, M. K. (2001) Rotaviruses and their replication. In: Fields Virology. Eds: Knipe, D. M. & Howley, P. M. Philadelphia, Lippincott-Williams and Willkins, pp. 1747-1785
14. EL-ATTAR, L., DHALIWAL, W., HOWARD, C. R. & BRIDGER, J. C. (2001) Rotavirus cross-species pathogenicity: molecular characterization of a bovine rotavirus pathogenic for pigs. Virology 291, 172-182
15. FENG, N., BURNS, J. W., BRACY, L. & GREENBERG, H. (1994) Comparison of mucosal and systemic humoral immune responses and subsequent protection in mice orally inoculated with a homologous or heterologous rotavirus. Journal of Virology 68, 7766-7773
16. FLORES, J., MYSLINSKI, J., KALICA, A. R., GREENBERG, H. B., WYATT, R. G., KAPIKIAN, A. Z. & CHANOCK, R. M. (1982) In vitro transcription of two human rotaviruses. Journal of Virology 43, 1032-1037
17. GERNA, G., SARASINI, A., PAREA, M., ARISTA, S., MIRANDA, P., BRUSSOW, H., HOSHINO, Y. & FLORES, J. (1992) Isolation and characterization of two distinct human rotavirus strains with G6 specificity. Journal of Clinical Microbiology 30, 9-16
18. GLASS, R. I., BRESEE, J. S., PARASHAR, U., MILLER, M. & GENTSCH, J. R. (1997) Rotavirus vaccines at the threshold. Nature Medicine 3, 1324-1325
19. GLASS, R. I., GENTSCH, J. & IVANOFF, B. (1996) New lessons for rotavirus vaccines. Science 272, 46-48
20. GRAHAM, D. Y., DUFOUR, G. R. & ESTES, M. K. (1987) Minimal infective dose of rotavirus. Archives of Virology 92, 261-271
21. GREENBERG, H., MCAURIFFE, V., VALDESUSO, J., WYATT, R., FLORES, J., KALICA, A., HOSHINO, Y. & SINGH, N. (1983) Serological analysis of the subgroup protein of rotavirus, using monoclonal antibodies. Infection and Immunity 39, 91-99
22. HALL, G. A., BRIDGER, J. C., CHANDLER, R. L. & WOODE, G. N. (1976) Gnotobiotic piglets experimentally infected with neonatal calf diarrhoea reovirus-like agent (rotavirus). Veterinary Pathology 13, 197-210
23. HORIE, Y., NAKAGOMI, O., KOSHIMURA, Y., NAKAGOMI, T., SUZUKI, Y., OKA, T., SASAKI, S., MATSUDA, Y. & WATANABE, S. (1999) Diarrhoea induction by rotavirus NSP4 in the homologous mouse model system. Virology 262, 398-407
24. HOSHINO, Y., SERENO, M. M., MIDTHUN, K., FLORES, J., KAPIKIAN, A. Z. & CHANOCK, R. M. (1985) Independent segregation of two antigenic specificities (VP3 and VP7) involved in neutralization of rotavirus infectivity. Proceedings of National Academy of Sciences USA 82, 8701-8704
25. HOSHINO, Y., WYATT, R. G., GREENBERG, H. B., KALICA, A. R., FLORES, J. & KAPIKIAN, A. Z. (1983) Isolation and characterization of an equine rotavirus. Journal of Clinical Microbiology 18, 585-591
26. IIZUKA, M., CHIBA, M., MASAMUNE, O., KAGA, E., NAKAGOMI, T. & NAKAGOMI, O. (1994a) A highly conserved genomic RNA constellation of Japanese isolates of human rotaviruses carrying G serotype 3 and P serotype 9. Research in Virology 145, 21-24
27. IIZUKA, M., KAGA, E., CHIBA, M., MASAMUNE, O., GERNA, G. & NAKAGOMI, O. (1994b) Serotype G6 human rotavirus sharing a conserved genetic constellation with natural reassortants between members of the bovine and AU-1 genogroups. Archives of Virology 135, 427-432
28. IMAGAWA, H., ISHIDA, S., UESUGI, S., KAMADA, M., FUKUNAGA, Y. & NAKAGOMI, O. (1994) Genetic analysis of equine rotavirus by RNA-RNA hybridization. Journal of Clinical Microbiology 32, 2009-2012
29. IMAGAWA, H., TANAKA, T., SEKIGUCHI, K., FUKUNAGA, Y., ANZAI, T., MINAMOTO, N. & KAMADA, M. (1993) Electropherotypes, serotypes, and subgroups of equine rotaviruses isolated in Japan. Archives of Virology 131
30. KAGA, E. & NAKAGOMI, O. (1994) The distribution of G (VP7) and VP4 (P) serotypes among human rotaviruses recovered from Japanese children with diarrhoea. Microbiology and Immunology 38, 317-320
31. KAGA, E., NAKAGOMI, O. & UESUGI, S. (1992) Thermal degradation of RNA-RNA hybrids during hybridization in solution. Molecular and Cellular Probes 6, 261-264
32. KAPIKIAN, A. Z., HOSHINO, Y. & CHANOCK, R. M. (2001) Rotaviruses. In: Fields Virology. Eds: Knipe, D. M. & Howley, P. M. Philadelphia, Lippincott-Williams & Willkins, pp. 1787-1833
33. KAPIKIAN, A. Z., HOSHINO, Y., CHANOCK, R. M. & PEREZ-SCHAEL, I. (1996) Efficacy of a quadrivalent rhesus rotavirus-based human rotavirus vaccine aimed at preventing severe rotavirus diarrhoea in infant and young children. Journal of Infectious Diseases 174(Suppl. 1), s65-s72
34. MALHERBE, H., HARWIN, R. & ULRICH, M. (1963) The cytopathic effects of vervet monkey viruses. South African Medical Journal 37, 407-411
35. MATSUDA, Y. & NAKAGOMI, O. (1989) Antigenic and molecular characterization of bovine rotaviruses isolated in Japan. Research in Virology 140, 337-350
36. MEBUS, C., UNDERDAHL, N., RHODES, M. & TWIEHAUS, M. (1969) Calf diarrhoea (scours): reproduced with a virus from a field outbreak. Research Bulletin 233, 1-16
37. MEBUS, C. A., KONNO, M., UNDERDAHL, N. R. & TWIEHAUS, M. J. (1971) Cell culture propagation of neonatal calf diarrhoea (scours) virus. Canadian Veterinary Journal 12, 69-72
38. MERTENS, P. P. C., ARELLA, M., ATTOUI, H., BELLONICK, S., BERGOIN, M., BOCCARDO, G., BOOTH, T. F., CHIU, W., DIPROSE, J. M., DUNCAN, R., ESTES, M. K., GORZIGLIA, M., GOUTET, P., GOULD, A. R., GRIMES, J. M., HEWAT, E., HOLMES, I. H., HOSHINO, Y., HILL, C., JOKLIK, W. K., KNOWLES, N., FERBER, M. L., MALBY, R., MARZACHI, C., MCRAE, M. A., MILNE, R. G., NIBERT, M., NUNN, M., STOLZ, D. B., STUART, D. I., SUZUKI, N., UPADHYAYA, N., UYEDA, I., WATERHOUSE, P., WILLIAMS, C. F., WINTON, J. R. & ZHOU, H. Z. (2000) Family Reoviridae. In: Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses. Eds: van Regenmortel, M. H. V., Fauquet, C. M. & Bishop, D. H. L. San Diego, Academic Press, pp. 395-480
39. MIDTHUN, K., VALDESUSO, J., HOSHINO, Y., FLORES, J., KAPIKIAN, A. Z. & CHANOCK, R. M. (1987) Analysis by RNA-RNA hybridization assay of intertypic rotaviruses suggests the gene reassortment occurs in vivo. Journal of Clinical Microbiology 25, 295-300
40. MOCHIZUKI, M., NAKAGOMI, O. & SHIBATA, S. (1992) Hemagglutinin activity of two distinct genogroups of feline and canine rotavirus strains. Archives of Virology 122, 373-381
41. MOCHIZUKI, M., NAKAGOMI, T. & NAKAGOMI, O. (1997) Isolation from diarrhoeal and asymptomatic kittens of three rotavirus strains that belong to the AU-1 genogroup of human rotaviruses. Journal of Clinical Microbiology 35, 1272-1275
42. MOCHIZUKI, M., SAMESHIMA, R., ATA, M., MINAMI, K. & OKABAYASHI, K. (1985) Characterization of canine rotavirus RS15 strain and comparison with other rotaviruses. Japanese Journal of Veterinary Science 47, 531-538
43. MORI, Y., SUGIYAMA, M., TAKAYAMA, M., ATOJI, Y., MASEGI, T. & MINAMOTO, N. (2001) Avian-to-mammal transmission of an avian rotavirus: analysis of its pathogenicity in a heterologous mouse model. Virology 288, 63-70
44. MORI, Y., BORGAN, M. A., ITO, N., SUGIYAMA, M. & MINAMOTO, N. (2002) Diarrhea-inducing activity of avian rotavirus NSP4 glycoproteins, which differ greatly from mammalian rotavirus NSP4 glycoproteins in deduced amino acid sequence, in suckling mice. Journal of Virology 288, 63-70
45. NAKAGOMI, O. & NAKAGOMI, T. (1991a) Genetic diversity and similarity among mammalian rotaviruses in relation to interspecies transmission of rotavirus. Archives of Virology 120, 43-55
46. NAKAGOMI, O. & NAKAGOMI, T. (1991b) Molecular evidence for naturally occurring single VP7 gene substitution reassortant between human rotaviruses belonging to two different genogroups. Archives of Virology 119, 67-81
47. NAKAGOMI, O. & NAKAGOMI, T. (1993) Interspecies transmission of rotaviruses studied from the perspective of genogroup. Microbiology and Immunology 37, 337-348
48. NAKAGOMI, O. & NAKAGOMI, T. (1996) Molecular epidemiology of human rotaviruses: genogrouping by RNA-RNA hybridization. Archives of Virology (Suppl. 12), 93-98
49. NAKAGOMI, O., NAKAGOMI, T., AKATANI, K. & IKEGAMI, N. (1989a) Identification of rotavirus genogroups by RNA-RNA hybridization. Molecular and Cellular Probes 3, 251-261
50. NAKAGOMI, O., NAKAGOMI, T., HOSHINO, Y., FLORES, J. & KAPIKIAN, A. Z. (1987) Genetic analysis of a human rotavirus that belongs to subgroup I but has an RNA pattern typical of subgroup II human rotaviruses. Journal of Clinical Microbiology 25, 1159-1164
51. NAKAGOMI, O., NAKAGOMI, T., OYAMADA, H. & SUTO, T. (1985) Relative frequency of human rotavirus subgroups 1 and 2 in Japanese children with acute gastroenteritis. Journal of Medical Virology 17, 29-34
52. NAKAGOMI, T., MATSUDA, Y., OSHIMA, A., MOCHIZUKI, M. & NAKAGOMI, O. (1989b) Characterization of a canine rotavirus strain by neutralization and molecular hybridization assays. Archives of Virology 106, 145-150
53. NAKAGOMI, T. & NAKAGOMI, O. (1989) RNA-RNA hybridization identifies a human rotavirus that is genetically related to feline rotavirus. Journal of Virology 63, 1431-1434
54. NAKAGOMI, T. & NAKAGOMI, O. (2000) Human rotavirus HCR3 possesses a genomic RNA constellation indistinguishable from that of feline and canine rotaviruses. Archives of Virology 145, 2403-2409
55. OFFIT, P. A. & BLAVAT, G. (1986) Identification of two rotavirus genes determining neutralization specificities. Journal of Virology 57, 376-378
56. SAIF, L. J., ROSEN, B. I. & PARWANI, A. V. (1994) Animal rotaviruses. In: Viral Infections of the Gastrointestinal Tract. Ed: Kapikian, A. Z. New York, Basel, Hong Kong, Marcel Dekker
57. SHAW, D. P., MOREHOUSE, L. G. & SOLORZANO, R. F. (1989) Rotavirus replication in colostrum-fed and colostrum-deprived pigs. American Journal of Veterinary Research 50, 1966-1970
58. SUZUKI, Y., SANEKATA, T., SATO, M., TAJIMA, K., MATSUDA, Y. & NAKAGOMI, O. (1993) Relative frequencies of G(VP7) and P(VP4) serotypes determined by polymerase chain reaction assays among Japanese bovine rotaviruses isolated in cell culture. Journal of Clinical Microbiology 31, 3046-3049
59. TSUNEMITSU, H., IMAGAWA, H., TOGO, M., SHOUJI, T., KAWASHIMA, K., HORINO, R., IMAL K., NISHIMORI, T., TAKAGI, M. & HIGUCHI, T. (2001) Predominance of G3B and G14 equine group A rotaviruses of a single VP4 serotype in Japan. Archives of Virology 146, 1949-1962
60. TZIPORI, S. & MAKIN, T. (1978) Propagation of human rotavirus in young dogs. Veterinary Microbiology 3, 55-63
61. TZIPORI, S. R., MAKIN, T. J. & SMITH, M. L. (1980) The clinical response of gnotobiotic calves, pigs and lambs to inoculation with human, calf, pig, and foal rotavirus isolates. Australian Journal of Experimental Biology and Medical Science 58, 309-318
62. VESIKARI, T., ISOLAURI, E., D'HONDT, E., DELEM, A., ANDRE, F. E. & ZISSIS, G. (1984) Protection of infants against rotavirus diarrhoea by RIT 4237 attenuated bovine rotavirus strain vaccine. Lancet 1, 977-981
63. WARD, R. L., NAKAGOMI, O., KNOWLTON, D. R., MCNEAL, M. M., NAKAGOMI, T., CLEMENS, J. D., SACK, D. A. & SCHIFF, G. M. (1990) Evidence for natural reassortants of human rotaviruses belonging to different genogroups. Journal of Virology 64, 3219-3225
64. WU, H., TANIGUCHI, K., URASAWA, T. & URASAWA, S. (1993) Genomic relatedness of five equine rotavirus strains with different G serotype and P type specificities. Research in Virology 144, 455-464
65. WYATT, R., JAMES, W., BOHL, E., THEIL, K., SAIF, L., KALICA, A., GREENBERG, H., KAPIKIAN, A. & CHANOCK, R. (1980) Human rotavirus type 2: cultivation in vitro. Science 207, 189-191
66. YASON, C. V. & SCHAT, K. A. (1986) Experimental infection of specific-pathogen-free chickens with avian rotaviruses. Avian Disease 30, 551-556