Detection and characterization of novel rotavirus strains in the United States

Journal of Clinical Microbiology

Volumn 36, Issue 11, 1998, Pages 3223-3229

  Ramachandran, M ^a   Gentsch, J R ^a,b   Parashar, U D ^a,b   Jin, S ^a   Woods, P A ^a   Holmes, J L ^a   Kirkwood, C D ^a   Bishop, R F ^c   Greenberg, H B ^e,f   Urasawa, S ^g   Gerna, G ⁱ   Coulson, B S ^d   Taniguchi, K ^h   Bresee, J S ^a   Glass, R I ^a   Nelson, Rebecca ^j   Hartin, Michelle ^k   Robinson, Christine C ^l   Arcilla, Yolanda ^m   Mason, Theresa J ⁿ   Hamilton, Marilyn ^o   Yam, Paul A ^p   Aiazzi, DeLores ^q   Clark, H Fred ^r   Johnson, Tammi ^s   more..

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^c ROYAL CHILDREN'S HOSPITAL   (Australia)

^d UNIVERSITY OF MELBOURNE   (Australia)

^e STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^f VETERANS AFFAIRS MEDICAL CENTER   (United States)

^g SAPPORO MEDICAL UNIVERSITY   (Japan)

^h FUJITA HEALTH UNIVERSITY SCHOOL OF MEDICINE   (Japan)

ⁱ FONDAZIONE IRCCS POLICLINICO SAN MATTEO   (Italy)

^j ARKANSAS CHILDREN S HOSPITAL   (United States)

^k RADY CHILDREN'S HOSPITAL   (United States)

^l CHILDREN S HOSPITAL   (United States)

^m MEDICAL CENTER OF DELAWARE   (United States)

ⁿ INDIANA UNIVERSITY HEALTH   (United States)

^o CHILDREN S MERCY HOSPITAL   (United States)

^p Childrens Hospital   (United States)

^q Renown Health   (United States)

^r CHILDREN S HOSPITAL OF PHILADELPHIA   (United States)

^s Driscoll Childrens Hospital   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MONOCLONAL ANTIBODY; VIRUS RNA;

ANTIGEN BINDING; ARTICLE; GENE; GENE SEQUENCE; GENOTYPE; HYBRIDIZATION; IMMUNOASSAY; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA PROBE; ROTAVIRUS; SEROTYPE; UNITED STATES; VIRUS CHARACTERIZATION; VIRUS DETECTION;

RNA VIRUSES; ROTAVIRUS;

EID: 0031717458     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.36.11.3223-3229.1998     Document Type: Article

References (50)

1. Ando, T., S. S. Monroe, J. R. Gentsch, Q. Jin, D. C. Lewis, and R, I. Glass. 1995. Detection and differentiation of antigenically distinct small round-structured viruses (Norwalk-like viruses) by reverse transcription-PCR and Southern hybridization. J. Clin. Microbiol. 33:64-71.
2. Both, G. W. 1985. Unpublished data.
3. Cicirello, H. G., B. K. Das, A. Gupta, M. K. Bhan, J. R. Gentsch, R. Kumar, and R. I. Glass. 1994. High prevalence of rotavirus infection among neonates born at hospitals in Delhi, India: predisposition of newborns for infection with unusual rotavirus. Pediatr. Infect. Dis. J. 13:720-724.
4. Clark, H. F., Y. Hoshino, L. M. Bell, J. Groff, G. Hess, P. Bachman, and P. A. Offit. 1987. Rotavirus isolate W161 representing a presumptive new human serotype. J. Clin. Microbiol. 25:1757-1762.
5. Clark, H. F., P. A. Offit, R. W. Ellis, J. J. Eiden, D. Krah, A. R. Shaw, M. Pichichero, J. J. Treanor, F. E. Borian, L. M. Bell, and S. A. Plotkin. 1996. The development of multivalent bovine rotavirus (strain WC3) reassortant vaccine for infants. J. Infect. Dis. 174(Suppl. 1):S73-S80.
6. Coulson, B., L. E. Unicomb, G. A. Pitson, and R. F. Bishop. 1987. Simple and specific enzyme immunoassay using monoclonal antibodies for serotyping human rotaviruses. J. Clin. Microbiol. 25:509-515.
7. Das, B. K., J. R. Gentsch, H. G. Cicirello, P. A. Woods, A. Gupta, M. Ramachandran, R. Kumar, M. K. Bhan, and R. I. Glass. 1994. Characterization of rotavirus strains from newborns in New Delhi, India. J. Clin. Microbiol. 32:1820-1822.
8. Das, B. K., J. R. Gentsch, Y. Hoshino, S.-I. Ishida, O. Nakagomi, M. K. Bhan, R. Kumar, and R. I. Glass. 1993. Characterization of the G serotype and genogroup of New Delhi newborn rotavirus strain 116E. Virology 197: 99-107.
9. Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
10. Estes, M. 1996. Rotaviruses and their replication, p. 1625-1655. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed., vol. 2. Lippincott-Raven Press, Philadelphia, Pa.
11. Felsenstein, J. 1989. PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164-166.
12. Flores, J., J. Sears, I. P. Schael, L. White, D. Garcia, C. Lanata, and A. Z. Kapikian. 1990. Identification of human rotavirus serotype by hybridization to polymerase chain reaction-generated probes derived from a hyperdivergent region of the gene encoding outer capsid protein VP7. J. Virol. 64:4021-4024.
13. Gentsch, J. R., R. I. Glass, P. Woods, V. Gouvea, M. Gorziglia, J. Flores, B. K. Das, and M. K. Bhan. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 30:1365-1373.
14. Gentsch, J. R., P. A. Woods, M. Ramachandran, B. K. Das, J. P. Leite, A. Alfieri, R. Kumar, M. K. Bhan, and R. I. Glass. 1996. Review of G and P typing results from a global collection of strains: implications for vaccine development. J. Infect. Dis. 174(Suppl. 1):S30-S36.
15. Gerna, G., A. Sarasini, S. Arista, A. Di Mateo, L. Giovanelli, M. Parea, and P. Halonen. 1990. Prevalence of human rotavirus serotypes in some European countries 1981-1988. Scand. J. Infect. Dis. 22:5-10.
16. Gerna, G., A. Sarasini, M. Parea, S. Arista, P. Miranda, H. Brussow, Y. Hoshino, and J. Flores. 1992. Isolation and characterization of two distinct human rotavirus strains with G6 specificity. J. Clin. Microbiol. 30:9-16.
17. Gorziglia, M., K. Green, K, Nishikawa, K. Taniguchi, R. Jones, A. Z. Kapikian, and R. M. Chanock. 1988. Sequence of the fourth gene of human rotaviruses recovered from asymptomatic or symptomatic infections. J. Virol. 62:2978-2984.
18. Gouvea, V., R. I. Glass, P. Woods, K. Taniguichi, H. F. Clark, B. Forrester, and Z. Y. Fang. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J, Clin. Microbiol. 28:276-282.
19. Green, K. Y., Y. Hoshino, and N. Ikegami. 1989. Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes. Virology 168:429-433.
20. Green, K. Y., J. F. Sears, K. Tanigucbi, K. Midthun, Y. Hoshino, M. Gorziglia, K. Nishikawa, S. Urasawa, A. Z. Kapikian, R. M. Chanock, and J. Flores. 1988. Prediction of human rotavirus serotype by nucleotide sequence analysis of the VP7 protein gene. J. Virol. 62:1819-1823.
21. Greenberg, H., V. McAuliffe, J. Valdesuso, R Wyatt, J. Flores, A. Kalica, Y. Hoshino, and N. Singh. 1983. Serological analysis of the subgroup protein of rotavirus using monoclonal antibodies. Infect. Immun. 39:91-99.
22. Hum, C. P., M. L. Dyall-Smith, and I. H. Holmes. 1989. The VP7 gene of a new G serotype of human rotavirus (B37) is similar to G3 proteins in the antigenic C region. Virology 170:55-61.
23. Kantharidis, P., M. L. Dyall-Smith, and I. H. Holmes. 1987. Marked sequence variation between segment 4 genes of human RV-5 and simian SA-11 rotavirus. Arch. Virol. 93:111-121.
24. Kapikian, A. Z., J. Flores, T. Vesikari, T. Ruuska, H. P. Madore, K. Y. Green, M. Gorziglia, Y. Hoshino, R. M. Chanock, K. Midthun, and I. Perez-Schael. 1991. Recent advances in development of a rotavirus vaccine for prevention of severe diarrheal illness of infants and young children, p. 255-264. In J. Mestecky et al. (ed.). Immunology of milk and the neonate. Plenum Press, New York, N.Y.
25. Kilgore, P. E., R. C. Holman, M. J. Clarke, and R. I. Glass. 1995. Trends of diarrheal disease-associated mortality in U.S. children, 1968 through 1991. JAMA 274:1143-1148.
26. Kirkwood, C., P. J. Masendycz, and B. S. Coulson. 1993. Characteristics and location of cross-reactive and serotype-specific neutralization sites on VP7 of human G type 9 rotaviruses. Virology 196:79-88.
27. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
28. Larralde, G., and J. Flores. 1990. Identification of gene 4 alleles among human rotaviruses by polymerase chain reaction-derived probes. Virology 179:469-473.
29. Leite, J. P., A. A. Alfieri, P. Woods, R. I. Glass, and J. R. Gentsch. 1996. Rotavirus G and P types circulating in Brazil: characterization by RT-PCR, probe hybridization, and sequence analysis. Arch. Virol. 141:2365-2374.
30. Mackow, E. R., R. D. Shaw, S. M. Matsui, P. T. Vo, M. N. Dang, and H. B. Greenberg. 1988. The rhesus rotavirus gene encoding protein VP3: location of amino acids involved in homologous and heterologous rotavirus neutralization and identification of a putative fusion region. Proc. Natl. Acad. Sci. USA 85:645-649.
31. Masendycz, P. J., E. A. Palombo, R. J. Gorrell, and R. F. Bishop. 1997. Comparison of enzyme immunoassay, PCR, and type-specific cDNA probe techniques for identification of group A rotavirus gene 4 types. J. Clin. Microbiol. 35:3104-3108.
32. Matson, D. O., M. K. Estes, J. W. Burns, H. B. Greenberg, K. Taniguchi, and S. Urasawa. 1990. Serotype variation of human group A rotaviruses in two regions of the USA. J. Infect. Dis. 162:605-614.
33. Nakagomi, O., T. Nakagomi, K. Akatani, N. Ikegami, and N. Katsushima. 1990. Relative frequency of rotavirus serotypes in Yamagata, Japan, over four consecutive rotavirus seasons. Res. Virol. 141:459-463.
34. Nakagomi, T., K. Akatani, N. Ikegami, N. Katsushima, and O. Nakagomi. 1988. Occurrence of changes in human rotavirus serotypes with concurrent changes in genomic RNA electropherotypes. J. Clin. Microbiol. 26:2586-2592.
35. Offit, P. A., H. F. Clark, G. Blavat, and H. B. Greenberg. 1986. Reassortant rotaviruses containing structural proteins VP3 and VP7 from different parents induce antibodies protective against each parental serotype. J. Virol. 60: 491-496.
36. Parashar, U. D., R. C. Holman, M. J. Clarke, J. S. Bresee, and R. I. Glass. 1997. Hospitalizations associated with rotavirus diarrhea in the United States. 1993 through 1995: surveillance based on the new ICD-9-CM rotavirus-specific diagnostic code. J. Infect. Dis. 177:13-17.
37. Pereira, H. G., V. S. Gouvea, and A. M. Fialho. 1986. A comparison of simian rotavirus SA11 preparations maintained in different laboratories. Mem. Inst. Oswaldo Cruz 81:389-393.
38. Ramachandran, M., B. K. Das, A. Vij, R. Kumar, S. S. Bhambal, N. Kesari, H. Rawat, L. Bahl, S. Thakur, P. A. Woods, R. I. Glass, M. K. Bhan, and J. R. Gentsch. 1996. Unusual diversity of human rotavirus G and P genotypes in India. J. Clin. Microbiol. 34:436-439.
39. Reddy, D. A., H. B. Greenberg, and A. R. Bellamy. 1989. Nucleotide sequence of St. Thomas 3 rotavirus genomic segment 9: an RNA encoding the major serotypic antigen. Nucleic Acids Res. 17:449.
40. Richardson, M. A., A. Iwamoto, N. Ikegami, A. Nomoto, and V. Furuichi. 1984. Nucleotide sequence of the gene encoding the serotype-specific antigen of human (Wa) rotavirus: comparison with the homologous gene from simian SA11 and UK bovine rotaviruses. J. Virol. 51:860-862.
41. Sereno, M. M., and M. I. Gorziglia. 1994. The outer capsid protein VP4 of murine rotavirus strain Eb represents a tentative new P type. Virology 199: 500-504.
42. Smith, E. M., M. K. Estes, D. Y. Graham, and C. P. Gerba. 1979. A plaque assay for the simian rotavirus SA11. J. Gen. Virol. 43:513-519.
43. Taniguchi, K., T. Urasawa, Y. Monta, H. B. Greenberg, and S. Urasawa. 1987. Direct serotyping of human rotavirus in stools using serotype 1-, 2-, 3-, and 4-specific monoclonal antibodies to VP7. J. Infect. Dis. 155:1159-1166.
44. Timenetsky, M. D., V. Gouvea, N. Santos, R. C. Carmona, and Y. Hoshino. 1997. A novel human rotavirus serotype with dual G5-G11 specificity. J. Gen. Virol. 78(Pt. 6):1373-1378.
45. Timenetsky, M. D. S. T., N. Santos, and V. Gouvea. 1994. Survey of rotavirus G and P types associated with human gastroenteritis in São Paulo, Brazil, from 1986 to 1992. J. Clin. Microbiol. 32:2622-2624.
46. Torok, T. J., P. E. Kilgore, M. J. Clarke, R. C. Holman, J. S. Bresee, and R. I. Glass. 1997. Visualizing geographic and temporal trends in rotavirus activity in the United States, 1991 to 1996. Pediatr. Infect. Dis. J. 16:941-946.
47. Unicomb, L. E., G. Podder, J. R. Gentsch, K. Z. Hasan, A. S. G. Faruque, M. J. Albert, and R. I. Glass. Submitted for publication.
48. Urasawa, S., A. Hasegawa, T. Urasawa, K. Taniguchi, F. Wakasugi, H. Suzuki, S. Inouye, B. Pongprot, J. Supawadee, S. Suprasert, P. Rangsiyanond, S. Tonusin, and Y. Yamazi. 1992. Antigenic and genetic analyses of human rotaviruses in Chiang Mai, Thailand: evidence for a close relationship between human and animal rotaviruses. J. Infect. Dis. 166:227-234.
49. Urasawa, S., T. Urasawa, K. Taniguchi, F. Wakasugi, N. Kobayashi, S. China, N. Sakurada, M. Morita, O. Morita, M. Tokieda, H. Kawamoto, Y. Minekawa, and M. Obseto. 1989. Survey of human rotavirus serotypes in diiferent locales in Japan by enzyme-linked immunosorbent assay with monoclonal antibodies. J. Infect. Dis. 160:44-51.
50. Woods, P. A., J. Gentsch, V. Gouvea, L. Mata, A. Simhon, M. Santosham, Z.-S. Bai, S. Urasawa, and R. I. Glass. 1992. Distribution of serotypes of human rotavirus in different populations. J. Clin. Microbiol. 30:781-785.