Molecular characteristics of German G8P[4] rotavirus strain GER1H-09 suggest that a genotyping and subclassification update is required for G8

Journal of Clinical Microbiology

Volumn 47, Issue 11, 2009, Pages 3569-3576

  Pietsch, C ^a   Petersen, L ^b   Patzer, L ^b   Liebert, U G ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b Krankenhaus St Elisabeth und St Barbara   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CASE REPORT; FEMALE; GENOTYPE; HUMAN; INFANT; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; ROTAVIRUS; STRAIN DIFFERENCE; VIRUS IDENTIFICATION; VIRUS INFECTION; VIRUS STRAIN;

AMINO ACID SEQUENCE; ANTIGENS, VIRAL; CAPSID PROTEINS; CLUSTER ANALYSIS; FECES; FEMALE; GENETIC VARIATION; GENOTYPE; GERMANY; HUMANS; INFANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ROTAVIRUS;

EID: 70449623205     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01471-09     Document Type: Article

References (38)

1. Bányai, K., A. Bogdán, G. Domonkos, P. Kisfali, P. Molnár, A. Tóth, B. Melegh, V. Martella, J. R. Gentsch, and G. Szucs. 2009. Genetic diversity and zoonotic potential of human rotavirus strains, 2003-2006, Hungary. J. Med. Virol. 81:362-370.
2. Ciarlet, M., C. Hoffmann, E. Lorusso, R. Baselga, M. A. Cafiero, K. Bányai, J. Matthijnssens, V. Parreño, S. de Grazia, C. Buonavoglia, and V. Martella. 2008. Genomic characterization of a novel group A lamb rotavirus isolated in Zaragoza, Spain. Virus Genes 37:250-265.
3. Cook, N., J. Bridger, K. Kendall, M. I. Gomara, L. El-Attar, and J. Gray. 2004. The zoonotic potential of rotavirus. J. Infect. 48:289-302.
4. Cunliffe, N. A., J. S. Gondwe, R. L. Broadhead, M. E. Molyneux, P. A. Woods, J. S. Bresee, R. I. Glass, J. R. Gentsch, and C. A. Hart. 1999. Rotavirus G and P types in children with acute diarrhea in Blantyre, Malawi, from 1997 to 1998: predominance of novel P[6]G8 strains. J. Med. Virol. 57:308-312.
5. de Rougemont, A., J. Kaplon, P. Lebon, F. Huet, F. Denis, S. Alain, L. Fourcade, J. Grosjean, M. J. El-Hajje, D. Gendrel, and P. Pothier. 2009. Unexpected substitution of dominant rotavirus G genotypes in French hospitalized children over five consecutive seasons. Eur. J. Clin. Microbiol. Infect. Dis. 28:403-407.
6. Esona, M. D., A. Geyer, N. Page, A. Trabelsi, I. Fodha, M. Aminu, V. A. Agbaya, B. Tsion, T. K. Kerin, G. E. Armah, A. D. Steele, R. I. Glass, and J. R. Gentsch. 2009. Genomic characterization of human rotavirus G8 strains from the African rotavirus network: relationship to animal rotaviruses. J. Med. Virol. 81:937-951.
7. Estes, M. K. 2001. Rotaviruses and their replication, p. 1747-1785. In D. M. Knipe, R. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman, and S. E. Straus (ed.), Fields virology, 4th ed., vol.2. Lippincott Williams and Wilkins, Philadelphia, PA.
8. Fukai, K., H. Onoda, T. Itou, M. Sato, Y. Miura, and T. Sakai. 2004. Genetic and serological characterization of novel serotype G8 bovine group A rotavirus strains isolated in Japan. J. Vet. Med. Sci. 66:1413-1416.
9. Gerna, G., A. Sarasini, L. Zentilin, A. DiMatteo, P. Miranda, M. Parea, M. Battaglia, and G. Milanesi. 1990. Isolation in Europe of 69M-like (serotype 8) human rotavirus strains with either subgroup I or II specificity and a long RNA electropherotype. Arch. Virol. 112:27-40.
10. Gerna, G., A. D. Steele, Y. Hoshino, M. Sereno, D. Garcia, A. Sarasini, and J. Flores. 1994. A comparison of the VP7 gene sequences of human and bovine rotaviruses. J. Gen. Virol. 75:1781-1784.
11. Gouvea, V., R. I. Glass, P. Woods, K. Taniguchi, H. F. Clark, B. Forrester, and Z. Y. Fang. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J. Clin. Microbiol. 28:276-282.
12. Gouvea, V., N. Santos, and M. D. C. Timenetsky. 1994. Identification of bovine and porcine rotavirus G types by PCR. J. Clin. Microbiol. 32:1338-1340.
13. Green, K. Y., Y. Hoshino, and N. Ikegami. 1989. Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes. Virology 168:429-433.
14. Hoshino, Y., S. Honma, R. W. Jones, N. Santos, O. Nakagomi, T. Nakagomi, A. Z. Kapikian, and M. E. Thouless. 2006. A rotavirus strain isolated from pig-tailed macaque (Macaca nemestrina) with diarrhea bears a P6[1]:G8 specificity. Virology 345:1-12.
15. Hum, C. P., M. L. Dyall-Smith, and I. H. Holmes. 1989. The VP7 gene of a new G serotype of human rotavirus (B37) is similar to G3 proteins in the antigenic c region. Virology 170:55-61.
16. Isa, P., A. R. Wood, T. Netherwood, M. Ciarlet, H. Imagawa, and D. R. Snodgrass. 1996. Survey of equine rotaviruses shows conservation of one P genotype in background of two G genotypes. Arch. Virol. 141:1601-1612.
17. Iturriza-Gómara, M., U. Desselberger, and J. Gray. 2003. Molecular epidemiology of rotaviruses: genetic mechanisms associated with diversity, p. 317-344. In U. Desselberger and J. Gray (ed.), Gastroenteritis viruses. Elsevier Science Publishers, Amsterdam, The Netherlands.
18. Kapikian, A. Z., Y. Hoshino, and R. M. Chanock. 2001. Rotaviruses, p. 1787-1825. In D. M. Knipe, R. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman, and S. E. Straus (ed.), Fields virology, 4th ed., vol.2. Lippincott Williams and Wilkins, Philadelphia, PA.
19. Mas Marques, A., S. Diedrich, C. Huth, and E. Schreier. 2007. Group A rotavirus genotypes in Germany during 2005/2006. Arch. Virol. 152:1743-1749.
20. Matsuno, S., A. Hasegawa, A. Mukoyama, and S. Inouye. 1985. A candidate for a new serotype of human rotavirus. J. Virol. 54:623-624. (Pubitemid 15053152)
21. Matthijnssens, J., M. Rahman, X. Yang, T. Delbeke, I. Arijs, J. P. Kabue, J. J. Muyembe, and M. Van Ranst. 2006. G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J. Clin. Microbiol. 44:1801-1809.
22. Matthijnssens, J., M. Ciarlet, E. Heiman, I. Arijs, T. Delbeke, S. M. McDonald, E. A. Palombo, M. Iturriza-Gómara, P. Maes, J. T. Patton, M. Rahman, and M. Van Ranst. 2008. Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J. Virol. 82:3204-3219.
23. Matthijnssens, J., M. Ciarlet, M. Rahman, H. Attoui, K. Bányai, M. K. Estes, J. R. Gentsch, M. Iturriza-Gómara, C. D. Kirkwood, V. Martella, P. P. Mertens, O. Nakagomi, J. T. Patton, F. M. Ruggeri, L. J. Saif, N. Santos, A. Steyer, K. Taniguchi, U. Desselberger, and M. Van Ranst. 2008. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch. Virol. 153:1621-1629.
24. Okada, N., and Y. Matsumoto. 2002. Bovine rotavirus G and P types and sequence analysis of the VP7 gene of two G8 bovine rotaviruses from Japan. Vet. Microbiol. 84:297-305.
25. Palombo, E. A., R. Clark, and R. F. Bishop. 2000. Characterisation of a "European-like" serotype G8 human rotavirus isolated in Australia. J. Med. Virol. 60:56-62.
26. Parashar, U., J. Bresee, and R. Glass. 2006. Rotavirus and severe childhood diarrhea. Emerg. Infect. Dis. 12:304-306.
27. Parreño, V., K. Bok, F. Fernandez, and J. Gomez. 2004. Molecular characterization of the first isolation of rotavirus in guanacos (Lama guanicoe). Arch. Virol. 149:2465-2471. (Pubitemid 40059344)
28. Pietsch, C., and U. G. Liebert. Human infection with G12 rotaviruses, Germany. Emerg. Infect. Dis. 15:1512-1515.
29. Ruiz-Palacios, G. M., I. Pérez-Schael, F. R. Velázquez, H. Abate, T. Breuer, S. C. Clemens, B. Cheuvart, F. Espinoza, P. Gillard, B. L. Innis, Y. Cervantes, A. C. Linhares, P. López, M. Macías-Parra, E. Ortega-Barría, V. Richardson, D. M. Rivera-Medina, L. Rivera, B. Salinas, N. Pavía-Ruz, J. Salmerón, R. Rüttimann, J. C. Tinoco, P. Rubio, E. Nuñez, M. L. Guerrero, J. P. Yarzábal, S. Damaso, N. Tornieporth, X. Sáez-Llorens, R. F. Vergara, T. Vesikari, A. Bouckenooghe, R. Clemens, B. De Vos, M. O'Ryan, and Human Rotavirus Vaccine Study Group. 2006. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N. Engl. J. Med. 354:11-22.
30. Santos, N., and Y. Hoshino. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 15:29-56.
31. Snodgrass, D. R., T. A. Fitzgerald, I. Campbell, F. M. M. Scott, G. F. Browning, D. L. Miller, A. J. Herring, and H. B. Greenberg. 1990. Rotavirus serotypes 6 and 10 predominate in cattle. J. Clin. Microbiol. 28:504-507.
32. Steele, A. D., S. P. Parker, I. Peenze, C. T. Pager, M. B. Taylor, and W. D. Cubitt. 1999. Comparative studies of human rotavirus serotype G8 strains recovered in South Africa and the United Kingdom. J. Gen. Virol. 80:3029-3034.
33. Steyer, A., M. Poljsak-Prijatelj, T. L. Bufon, N. Marcun-Varda, and J. Marin. 2007. Rotavirus genotypes in Slovenia: unexpected detection of G8P[8] and G12P[8] genotypes. J. Med. Virol. 79:626-632.
34. Taniguchi, K., T. Urasawa, Y. Pongsuwanna, M. Choonthanom, C. Jayavasu, and S. Urasawa. 1991. Molecular and antigenic analyses of serotypes 8 and 10 of bovine rotaviruses in Thailand. J. Gen. Virol. 72:2929-2937.
35. Van Damme, P., C. Giaquinto, M. Maxwell, P. Todd, M. Van der Wielen, and REVEAL Study Group. 2007. Distribution of rotavirus genotypes in Europe, 2004-2005: the REVEAL Study. J. Infect. Dis. 195:17-25.
36. van Doorn, L. J., B. Kleter, E. Hoefnagel, I. Stainier, A. Poliszczak, B. Colau, and W. Quint. 2009. Detection and genotyping of human rotavirus VP4 and VP7 genes by reverse transcriptase PCR and reverse hybridization. J. Clin. Microbiol. 47:2704-2712.
37. Vesikari, T., D. O. Matson, P. Dennehy, P. Van Damme, M. Santosham, Z. Rodriguez, M. J. Dallas, J. F. Heyse, M. G. Goveia, S. B. Black, H. R. Shinefield, C. D. Christie, S. Ylitalo, R. F. Itzler, M. L. Coia, M. T. Onorato, B. A. Adeyi, G. S. Marshall, L. Gothefors, D. Campens, A. Karvonen, J. P. Watt, K. L. O'Brien, M. J. DiNubile, H. F. Clark, J. W. Boslego, P. A. Offit, P. M. Heaton, and Rotavirus Efficacy and Safety Trial (REST) Study Team. 2006. Safety and efficacy of a pentavalent human-bovine (WC3) reassortant rotavirus vaccine. N. Engl. J. Med. 354:23-33.
38. Volotão, E. M., C. C. Soares, A. G. Maranhão, L. N. Rocha, Y. Hoshino, and N. Santos. 2006. Rotavirus surveillance in the city of Rio de Janeiro-Brazil during 2000-2004: detection of unusual strains with G8P[4] or G10P[9] specificities. J. Med. Virol. 78:263-272.