Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin

Journal of General Virology

Volumn 89, Issue 10, 2008, Pages 2630-2635

  Matthijnssens, Jelle ^a   Rahman, Mustafizur ^a,b   van Ranst, Marc ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b ICDDR B Centre for Health and Population Research   (Bangladesh)

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 1; NONSTRUCTURAL PROTEIN 2; NONSTRUCTURAL PROTEIN 3; NONSTRUCTURAL PROTEIN 4; NONSTRUCTURAL PROTEIN 5; PROTEIN VP1; PROTEIN VP2; PROTEIN VP3; PROTEIN VP4; PROTEIN VP6; PROTEIN VP7; CAPSID PROTEIN; VIRUS ANTIGEN; VIRUS PROTEIN; VP3 PROTEIN, ROTAVIRUS; VP7 PROTEIN, ROTAVIRUS;

ARTICLE; BOVINE ROTAVIRUS; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC REASSORTMENT; HUMAN; HUMAN ROTAVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; ROTAVIRUS; SIMPLOT ANALYSIS; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; ANIMAL; CATTLE; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; VIROLOGY; VIRUS INFECTION;

ANIMALIA; BOVINAE; BOVINE ROTAVIRUS STRAINS; HUMAN ROTAVIRUS A; ROTAVIRUS;

ANIMALS; ANTIGENS, VIRAL; CAPSID PROTEINS; CATTLE; EVOLUTION, MOLECULAR; GENOME, VIRAL; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REASSORTANT VIRUSES; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 54449092749     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.2008/003780-0     Document Type: Article

References (29)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Bányai, K., Gentsch, J. R., Griffin, D. D., Holmes, J. L., Glass, R. I. & Szucs, G. (2003). Genetic variability among serotype G6 human rotaviruses: identification of a novel lineage isolated in Hungary. J Med Virol 71, 124-134.
3. Estes, M. & Kapikian, A. (2007). Rotaviruses. In Fields Virology, 5th edn, vol. 2, pp. 1917-1974. Edited by D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman & S. E. Straus. Philadelphia, PA: Kluwer/Lippincott, Williams and Wilkins.
4. Gerna, G., Sarasini, A., Parea, M., Arista, S., Miranda, P., Brussow, H., Hoshino, Y. & Flores, J. (1992). Isolation and characterization of two distinct human rotavirus strains with G6 specificity. J Clin Microbiol 30, 9-16.
5. Griffin, D. D., Nakagomi, T., Hoshino, Y., Nakagomi, O., Kirkwood, C. D., Parashar, U. D., Glass, R. I. & Gentsch, J. R. (2002). Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6],G12) and rare P3[9] strains related to bovine rotaviruses. Virology 294, 256-269.
6. Heaton, P. M. & Ciarlet, M. (2007). Vaccines: the pentavalent rotavirus vaccine: discovery to licensure and beyond. Clin Infect Dis 45, 1618-1624.
7. Hoshino, Y., Saif, L. J., Kang, S. Y., Sereno, M. M., Chen, W. K. & Kapikian, A. Z. (1995). Identification of group A rotavirus genes associated with virulence of a porcine rotavirus and host range restriction of a human rotavirus in the gnotobiotic piglet model. Virology 209, 274-280.
8. Ito, H., Sugiyama, M., Masubuchi, K., Mori, Y. & Minamoto, N. (2001). Complete nucleotide sequence of a group A avian rotavirus genome and a comparison with its counterparts of mammalian rotaviruses. Virus Res 75, 123-138.
9. Khamrin, P., Maneekarn, N., Peerakome, S., Chan-it, W., Yagyu, F., Okitsu, S. & Ushijima, H. (2007). Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain. Virology 361, 243-252.
10. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
11. Lambden, P. R., Cooke, S. J., Caul, E. O. & Clarke, I. N. (1992). Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66, 1817-1822.
12. Martella, V., Ciarlet, M., Bányai, K., Lorusso, E., Cavalli, A., Corrente, M., Elia, G., Arista, S., Camero, M. & other authors (2006). Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain. Virology 346, 301-311.
13. Martella, V., Ciarlet, M., Bányai, K., Lorusso, E., Arista, S., Lavazza, A., Pezzotti, G., Decaro, N., Cavalli, A. & other authors (2007). Identification of group A porcine rotavirus strains bearing a novel VP4 (P) genotype in Italian swine herds. J Clin Microbiol 45, 577-580.
14. Matthijnssens, J., Rahman, M., Martella, V., Xuelei, Y., De Vos, S., De Leener, K., Ciarlet, M., Buonavoglia, C. & Van Ranst, M. (2006a). Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J Virol 80, 3801-3810.
15. Matthijnssens, J., Rahman, M., Yang, X., Delbeke, T., Arijs, I., Kabue, J. P., Muyembe, J. J. & Van Ranst, M. (2006b). G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J Clin Microbiol 44, 1801-1809.
16. Matthijnssens, J., Ciarlet, M., Heiman, E., Arijs, I., Delbeke, T., McDonald, S. M., Palombo, A. E., Iturriza-Gómara, M., Maes, P. & other authors (2008a). Full genome-based classification of rotaviruses reveals common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82, 3204-3219.
17. Matthijnssens, J., Rahman, M., Ciarlet, M. & Van Ranst, M. (2008b). Emerging human rotavirus genotypes. In Viruses in the Environment, pp. 171-219. Edited by A. E. Palombo & C. D. Kirkwood. Trivandrum, India: Research Signpost.
18. Nicholas, K. B., Nicholas, H. B., Jr & Deerfield, D. W., II (1997). GeneDoc: analysis and visualization of genetic variation. EMBnet News 4 (2), 1-4. http://www.embnet.org/files/shared/ EMBnetNews/embnet_news_4_2.pdf
19. Palombo, E. A. & Bishop, R. F. (1995). Genetic and antigenic characterization of a serotype G6 human rotavirus isolated Melbourne, Australia. J Med Virol 47, 348-354.
20. Rahman, M., De Leener, K., Goegebuer, T., Wollants, E., Van der Donck, I., Van Hoovels, L. & Van Ranst, M. (2003). Genetic characterization of a novel, naturally occurring recombinant G6P[6] rotavirus. J Clin Microbiol 41, 2088-2095.
21. Rahman, M., Matthijnssens, J., Nahar, S., Podder, G., Sack, D. A., Azim, T. & Van Ranst, M. (2005). Characterization of a novel P[25],G11 human group a rotavirus. J Clin Microbiol 43, 3208-3212.
22. Rahman, M., Matthijnssens, J., Yang, X., Delbeke, T., Arijs, I., Taniguchi, K., Iturriza-Gómara, M., Iftekharuddin, N., Azim, T. & Van Ranst, M. (2007). Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 81, 2382-2390.
23. Rao, C. D., Gowda, K. & Reddy, B. S. (2000). Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses. Virology 276, 104-113.
24. Santos, N. & Hoshino, Y. (2005). Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15, 29-56.
25. Small, C., Barro, M., Brown, T. L. & Patton, J. T. (2007). Genome heterogeneity of SA11 rotavirus due to reassortment with "O" agent. Virology 359, 415-424.
26. Steyer, A., Poljsak-Prijatelj, M., Barlic-Maganja, D., Jamnikar, U., Mijovski, J. Z. & Marin, J. (2007). Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia. Virology 359, 275-282.
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
28. Van Damme, P., Giaquinto, C., Maxwell, M., Todd, P. & Van der Wielen, M. (2007). Distribution of rotavirus genotypes in Europe, 2004-2005: the REVEAL Study. J Infect Dis 195 (Suppl 1), S17-S25.
29. Vesikari, T., Karvonen, A., Prymula, R., Schuster, V., Tejedor, J. C., Cohen, R., Meurice, F., Han, H. H., Damaso, S. & Bouckenooghe, A. (2007). Efficacy of human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in European infants: randomised, double-blind controlled study. Lancet 370, 1757-1763.