-
1
-
-
0022156642
-
Management of infections caused by gram-negative bacilli: The role of antimicrobial combinations
-
Allan JD, Moellering Jr RC (1985) Management of infections caused by gram-negative bacilli: the role of antimicrobial combinations. Rev Infect Dis 7 (Suppl 4): S559-S571
-
(1985)
Rev Infect Dis
, vol.7
, Issue.SUPPL. 4
-
-
Allan, J.D.1
Moellering Jr., R.C.2
-
2
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD et al (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
more..
-
3
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
2008
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006.2008
-
(2006)
Mol Syst Biol
, vol.2
, pp. 2006
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
4
-
-
58149098150
-
Multi-site analysis reveals widespread antibiotic resistance in the marine pathogen Vibrio vulnificus
-
Baker-Austin C, McArthur JV, Lindell AH, Wright MS, Tuckfield RC, Gooch J, Warner L, Oliver J, Stepanauskas R (2009) Multi-site analysis reveals widespread antibiotic resistance in the marine pathogen Vibrio vulnificus. Microb Ecol 57: 151-159
-
(2009)
Microb Ecol
, vol.57
, pp. 151-159
-
-
Baker-Austin, C.1
McArthur, J.V.2
Lindell, A.H.3
Wright, M.S.4
Tuckfield, R.C.5
Gooch, J.6
Warner, L.7
Oliver, J.8
Stepanauskas, R.9
-
5
-
-
17144417743
-
Purification, properties, and crystallization of Saccharomyces cerevisiae dihydropterin pyrophosphokinase-dihydropteroate synthase
-
Berglez J, Pilling P, Macreadie I, Fernley RT (2005) Purification, properties, and crystallization of Saccharomyces cerevisiae dihydropterin pyrophosphokinase-dihydropteroate synthase. Protein Expr Purif 41: 355-362
-
(2005)
Protein Expr Purif
, vol.41
, pp. 355-362
-
-
Berglez, J.1
Pilling, P.2
MacReadie, I.3
Fernley, R.T.4
-
6
-
-
36248993384
-
Structure and activity of Yersinia pestis 6-hydroxymethyl-7,8- dihydropterin pyrophosphokinase as a novel target for the development of antiplague therapeutics
-
Blaszczyk J, Li Y, Cherry S, Alexandratos J, Wu Y, Shaw G, Tropea JE, Waugh DS, Yan H, Ji X (2007) Structure and activity of Yersinia pestis 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase as a novel target for the development of antiplague therapeutics. Acta Crystallogr D Biol Crystallogr 63: 1169-1177
-
(2007)
Acta Crystallogr D Biol Crystallogr
, vol.63
, pp. 1169-1177
-
-
Blaszczyk, J.1
Li, Y.2
Cherry, S.3
Alexandratos, J.4
Wu, Y.5
Shaw, G.6
Tropea, J.E.7
Waugh, D.S.8
Yan, H.9
Ji, X.10
-
7
-
-
0031887807
-
Maltose/maltodextrin system of Escherichia coli: Transport, metabolism, and regulation
-
BoosW, Shuman H (1998) Maltose/maltodextrin system of Escherichia coli: transport, metabolism, and regulation. Microbiol Mol Biol Rev 62: 204-229
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 204-229
-
-
Boosw Shuman, H.1
-
9
-
-
38549117301
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/ genome databases
-
Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD (2008) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/ genome databases. Nucleic Acids Res 36: D623-D631
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Kaipa, P.4
Krummenacker, M.5
Latendresse, M.6
Paley, S.7
Rhee, S.Y.8
Shearer, A.G.9
Tissier, C.10
Walk, T.C.11
Zhang, P.12
Karp, P.D.13
-
10
-
-
0041317450
-
The threedimensional structures of the Mycobacterium tuberculosis dihydrodipicolinate reductase-NADH-2,6-PDC and -NADPH-2,6- PDC complexes. Structural and mutagenic analysis of relaxed nucleotide specificity
-
Cirilli M, Zheng R, Scapin G, Blanchard JS (2003) The threedimensional structures of the Mycobacterium tuberculosis dihydrodipicolinate reductase-NADH-2,6-PDC and -NADPH-2,6- PDC complexes. Structural and mutagenic analysis of relaxed nucleotide specificity. Biochemistry 42: 10644-10650
-
(2003)
Biochemistry
, vol.42
, pp. 10644-10650
-
-
Cirilli, M.1
Zheng, R.2
Scapin, G.3
Blanchard, J.S.4
-
12
-
-
51849168525
-
The structure and mechanism of 6-hydroxymethyl- 7,8-dihydropterin pyrophosphokinase
-
Derrick JP (2008) The structure and mechanism of 6-hydroxymethyl- 7,8-dihydropterin pyrophosphokinase. Vitam Horm 79: 411-433
-
(2008)
Vitam Horm
, vol.79
, pp. 411-433
-
-
Derrick, J.P.1
-
13
-
-
58149128997
-
Metabolite-likeness' as a criterion in the design and selection of pharmaceutical drug libraries
-
Dobson PD, Patel Y, Kell DB (2009) 'Metabolite-likeness' as a criterion in the design and selection of pharmaceutical drug libraries. Drug Discov Today 14: 31-40
-
(2009)
Drug Discov Today
, vol.14
, pp. 31-40
-
-
Dobson, P.D.1
Patel, Y.2
Kell, D.B.3
-
14
-
-
0005779698
-
Variation in quantitative requirements for Na for transport of metabolizable compounds by the marine bacteria Alteromonas haloplanktis 214 and Vibrio fischeri
-
Droniuk R, Wong PT, Wisse G, Macleod RA (1987) Variation in quantitative requirements for Na for transport of metabolizable compounds by the marine bacteria Alteromonas haloplanktis 214 and Vibrio fischeri. Appl Environ Microbiol 53: 1487-1495
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 1487-1495
-
-
Droniuk, R.1
Wong, P.T.2
Wisse, G.3
MacLeod, R.A.4
-
15
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BO (2007) Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci USA 104: 1777-1782
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
16
-
-
0034519221
-
Robustness analysis of the Escherichia coli metabolic network
-
Edwards JS, Palsson BO (2000) Robustness analysis of the Escherichia coli metabolic network. Biotechnol Prog 16: 927-939
-
(2000)
Biotechnol Prog
, vol.16
, pp. 927-939
-
-
Edwards, J.S.1
Palsson, B.O.2
-
17
-
-
0042329503
-
Distinct replication requirements for the two Vibrio cholerae chromosomes
-
Egan ES, Waldor MK (2003) Distinct replication requirements for the two Vibrio cholerae chromosomes. Cell 114: 521-530
-
(2003)
Cell
, vol.114
, pp. 521-530
-
-
Egan, E.S.1
Waldor, M.K.2
-
18
-
-
0037223505
-
Structure and function of the Mur enzymes: Development of novel inhibitors
-
El Zoeiby A, Sanschagrin F, Levesque RC (2003) Structure and function of the Mur enzymes: development of novel inhibitors. Mol Microbiol 47: 1-12
-
(2003)
Mol Microbiol
, vol.47
, pp. 1-12
-
-
El Zoeiby, A.1
Sanschagrin, F.2
Levesque, R.C.3
-
19
-
-
69549111337
-
Antibiotics for emerging pathogens
-
Fischbach MA, Walsh CT (2009) Antibiotics for emerging pathogens. Science 325: 1089-1093
-
(2009)
Science
, vol.325
, pp. 1089-1093
-
-
Fischbach, M.A.1
Walsh, C.T.2
-
20
-
-
4644245934
-
The impact of transcriptome and proteome analyses on antibiotic drug discovery
-
Freiberg C, Brotz-Oesterhelt H, Labischinski H (2004) The impact of transcriptome and proteome analyses on antibiotic drug discovery. Curr Opin Microbiol 7: 451-459
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 451-459
-
-
Freiberg, C.1
Brotz-Oesterhelt, H.2
Labischinski, H.3
-
21
-
-
0036968519
-
Enzyme-ligand complexes of pyridoxine 50-phosphate synthase: Implications for substrate binding and catalysis
-
Garrido-Franco M, Laber B, Huber R, Clausen T (2002) Enzyme-ligand complexes of pyridoxine 50-phosphate synthase: implications for substrate binding and catalysis. J Mol Biol 321: 601-612
-
(2002)
J Mol Biol
, vol.321
, pp. 601-612
-
-
Garrido-Franco, M.1
Laber, B.2
Huber, R.3
Clausen, T.4
-
22
-
-
34547830837
-
A network-based method for target selection in metabolic networks
-
Guimera R, Sales-Pardo M, Amaral LA (2007) A network-based method for target selection in metabolic networks. Bioinformatics 23: 1616-1622
-
(2007)
Bioinformatics
, vol.23
, pp. 1616-1622
-
-
Guimera, R.1
Sales-Pardo, M.2
Amaral, L.A.3
-
25
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
Heidelberg JF, Eisen JA, Nelson WC, Clayton RA, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Umayam L, Gill SR, Nelson KE, Read TD, Tettelin H, Richardson D, Ermolaeva MD, Vamathevan J, Bass S, Qin H, Dragoi I et al (2000) DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 406: 477-483
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.10
Gill, S.R.11
Nelson, K.E.12
Read, T.D.13
Tettelin, H.14
Richardson, D.15
Ermolaeva, M.D.16
Vamathevan, J.17
Bass, S.18
Qin, H.19
Dragoi, I.20
more..
-
26
-
-
0029894129
-
The epidemiology of Vibrio infections in Florida, 1981-1993
-
Hlady WG, Klontz KC (1996) The epidemiology of Vibrio infections in Florida, 1981-1993. J Infect Dis 173: 1176-1183
-
(1996)
J Infect Dis
, vol.173
, pp. 1176-1183
-
-
Hlady, W.G.1
Klontz, K.C.2
-
27
-
-
0024556150
-
Engineering hybrid genes without the use of restriction enzymes: Gene splicing by overlap extension
-
Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR (1989) Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77: 61-68
-
(1989)
Gene
, vol.77
, pp. 61-68
-
-
Horton, R.M.1
Hunt, H.D.2
Ho, S.N.3
Pullen, J.K.4
Pease, L.R.5
-
28
-
-
34250692637
-
Inhibition of lysine biosyn thesis: An evolving antibiotic strategy
-
Hutton CA, Perugini MA, Gerrard JA (2007) Inhibition of lysine biosynthesis: an evolving antibiotic strategy. Mol Biosyst 3: 458-465
-
(2007)
Mol Biosyst
, vol.3
, pp. 458-465
-
-
Hutton, C.A.1
Perugini, M.A.2
Gerrard, J.A.3
-
29
-
-
34447317247
-
Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets
-
Jamshidi N, Palsson BO (2007) Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. BMC Syst Biol 1: 26
-
(2007)
BMC Syst Biol
, vol.1
, pp. 26
-
-
Jamshidi, N.1
Palsson, B.O.2
-
30
-
-
65449185894
-
Vibrio vulnificus: Disease and pathogenesis
-
Jones MK, Oliver JD (2009) Vibrio vulnificus: disease and pathogenesis. Infect Immun 77: 1723-1733
-
(2009)
Infect Immun
, vol.77
, pp. 1723-1733
-
-
Jones, M.K.1
Oliver, J.D.2
-
31
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M (2006) From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res 34: D354-D357
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
32
-
-
0036094366
-
Identification and functional analysis of the putAP genes encoding Vibrio vulnificus proline dehydrogenase and proline permease
-
Kim HJ, Lee JH, Rhee JE, Jeong HS, Choi HK, Chung HJ, Ryu S, Choi SH (2002) Identification and functional analysis of the putAP genes encoding Vibrio vulnificus proline dehydrogenase and proline permease. J Microbiol Biotechnol 12: 318-326
-
(2002)
J Microbiol Biotechnol
, vol.12
, pp. 318-326
-
-
Kim, H.J.1
Lee, J.H.2
Rhee, J.E.3
Jeong, H.S.4
Choi, H.K.5
Chung, H.J.6
Ryu, S.7
Choi, S.H.8
-
33
-
-
33846084811
-
Role of NtrC in biofilm formation via controlling expression of the gene encoding an ADP-glycero-manno-heptose-6-epimerase in the pathogenic bacterium, Vibrio vulnificus
-
Kim HS, Lee MA, Chun SJ, Park SJ, Lee KH (2007a) Role of NtrC in biofilm formation via controlling expression of the gene encoding an ADP-glycero-manno-heptose-6-epimerase in the pathogenic bacterium, Vibrio vulnificus. Mol Microbiol 63: 559-574
-
(2007)
Mol Microbiol
, vol.63
, pp. 559-574
-
-
Kim, H.S.1
Lee, M.A.2
Chun, S.J.3
Park, S.J.4
Lee, K.H.5
-
34
-
-
38349151554
-
Metabolic flux analysis and metabolic engineering of microorganisms
-
Kim HU, Kim TY, Lee SY (2008) Metabolic flux analysis and metabolic engineering of microorganisms. Mol Biosyst 4: 113-120
-
(2008)
Mol Biosyst
, vol.4
, pp. 113-120
-
-
Kim, H.U.1
Kim, T.Y.2
Lee, S.Y.3
-
35
-
-
75749144228
-
Genome-scale metabolic network analysis and drug targeting of multi-drug resistant pathogen acinetobacter baumannii AYE
-
Kim HU, Kim TY, Lee SY (2010a) Genome-scale metabolic network analysis and drug targeting of multi-drug resistant pathogen Acinetobacter baumannii AYE. Mol Biosyst 6: 339-348
-
(2010)
Mol Biosyst
, vol.6
, pp. 339-348
-
-
Kim, H.U.1
Kim, T.Y.2
Lee, S.Y.3
-
36
-
-
35348893696
-
Metabolite essentiality elucidates robustness of Escherichia coli metabolism
-
Kim PJ, Lee DY, Kim TY, Lee KH, Jeong H, Lee SY, Park S (2007b) Metabolite essentiality elucidates robustness of Escherichia coli metabolism. Proc Natl Acad Sci USA 104: 13638-13642
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 13638-13642
-
-
Kim, P.J.1
Lee, D.Y.2
Kim, T.Y.3
Lee, K.H.4
Jeong, H.5
Lee, S.Y.6
Park, S.7
-
37
-
-
77049123018
-
Metabolite-centric approaches for the discovery of antibacterials using genome-scale metabolic networks
-
Kim TY, Kim HU, Lee SY (2010b) Metabolite-centric approaches for the discovery of antibacterials using genome-scale metabolic networks. Metab Eng 12: 105-111
-
(2010)
Metab Eng
, vol.12
, pp. 105-111
-
-
Kim, T.Y.1
Kim, H.U.2
Lee, S.Y.3
-
38
-
-
34447296697
-
Genomescale analysis of Mannheimia succiniciproducens metabolism
-
Kim TY, Kim HU, Park JM, Song H, Kim JS, Lee SY (2007c) Genomescale analysis of Mannheimia succiniciproducens metabolism. Biotechnol Bioeng 97: 657-671
-
(2007)
Biotechnol Bioeng
, vol.97
, pp. 657-671
-
-
Kim, T.Y.1
Kim, H.U.2
Park, J.M.3
Song, H.4
Kim, J.S.5
Lee, S.Y.6
-
39
-
-
15944398636
-
Essential role of an adenylate cyclase in regulating Vibrio vulnificus virulence
-
Kim YR, Kim SY, Kim CM, Lee SE, Rhee JH (2005) Essential role of an adenylate cyclase in regulating Vibrio vulnificus virulence. FEMS Microbiol Lett 243: 497-503
-
(2005)
FEMS Microbiol Lett
, vol.243
, pp. 497-503
-
-
Kim, Y.R.1
Kim, S.Y.2
Kim, C.M.3
Lee, S.E.4
Rhee, J.H.5
-
40
-
-
0141781023
-
Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients
-
Kim YR, Lee SE, Kim CM, Kim SY, Shin EK, Shin DH, Chung SS, Choy HE, Progulske-Fox A, Hillman JD, Handfield M, Rhee JH (2003) Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients. Infect Immun 71: 5461-5471
-
(2003)
Infect Immun
, vol.71
, pp. 5461-5471
-
-
Kim, Y.R.1
Lee, S.E.2
Kim, C.M.3
Kim, S.Y.4
Shin, E.K.5
Shin, D.H.6
Chung, S.S.7
Choy, H.E.8
Progulske-Fox, A.9
Hillman, J.D.10
Handfield, M.11
Rhee, J.H.12
-
41
-
-
33847377573
-
A robustness-based approach to systems-oriented drug design
-
Kitano H (2007) A robustness-based approach to systems-oriented drug design. Nat Rev Drug Discov 6: 202-210
-
(2007)
Nat Rev Drug Discov
, vol.6
, pp. 202-210
-
-
Kitano, H.1
-
42
-
-
67449132895
-
Genome sequence of Vibrio splendidus: An abundant planctonic marine species with a large genotypic diversity
-
Le Roux F, Zouine M, Chakroun N, Binesse J, Saulnier D, Bouchier C, Zidane N, Ma L, Rusniok C, Lajus A, Buchrieser C, Medigue C, Polz MF, Mazel D (2009) Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity. Environ Microbiol 11: 1959-1970
-
(2009)
Environ Microbiol
, vol.11
, pp. 1959-1970
-
-
Le Roux, F.1
Zouine, M.2
Chakroun, N.3
Binesse, J.4
Saulnier, D.5
Bouchier, C.6
Zidane, N.7
Ma, L.8
Rusniok, C.9
Lajus, A.10
Buchrieser, C.11
Medigue, C.12
Polz, M.F.13
Mazel, D.14
-
43
-
-
67549123519
-
Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets
-
Lee DS, Burd H, Liu J, Almaas E, Wiest O, Barabasi AL, Oltvai ZN, Kapatral V (2009) Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets. J Bacteriol 191: 4015-4024
-
(2009)
J Bacteriol
, vol.191
, pp. 4015-4024
-
-
Lee, D.S.1
Burd, H.2
Liu, J.3
Almaas, E.4
Wiest, O.5
Barabasi, A.L.6
Oltvai, Z.N.7
Kapatral, V.8
-
44
-
-
0242475329
-
MetaFluxNet: The management of metabolic reaction information and quantitative metabolic flux analysis
-
Lee DY, Yun H, Park S, Lee SY (2003) MetaFluxNet: the management of metabolic reaction information and quantitative metabolic flux analysis. Bioinformatics 19: 2144-2146
-
(2003)
Bioinformatics
, vol.19
, pp. 2144-2146
-
-
Lee, D.Y.1
Yun, H.2
Park, S.3
Lee, S.Y.4
-
45
-
-
34249876230
-
The pyrH gene of Vibrio vulnificus is an essential in vivo survival factor
-
Lee SE, KimSY, Kim CM, KimMK,KimYR, Jeong K, Ryu HJ, Lee YS, Chung SS, Choy HE, Rhee JH (2007) The pyrH gene of Vibrio vulnificus is an essential in vivo survival factor. Infect Immun 75: 2795-2801
-
(2007)
Infect Immun
, vol.75
, pp. 2795-2801
-
-
Lee, S.E.1
Kimsy Kim, C.M.2
Kim, M.K.3
Kim, Y.R.4
Jeong, K.5
Ryu, H.J.6
Lee, Y.S.7
Chung, S.S.8
Choy, H.E.9
Rhee, J.H.10
-
46
-
-
22544454154
-
Identification and characterization of the Vibrio vulnificus malPQ operon
-
Lim MS, Lee MH, Lee JH, Ju H-M, Park NY, Jeong HS, Rhee JE, Choi SH (2005) Identification and characterization of the Vibrio vulnificus malPQ operon. J Microbiol Biotechnol 15: 616-625
-
(2005)
J Microbiol Biotechnol
, vol.15
, pp. 616-625
-
-
Lim, M.S.1
Lee, M.H.2
Lee, J.H.3
Ju, H.-M.4
Park, N.Y.5
Jeong, H.S.6
Rhee, J.E.7
Choi, S.H.8
-
47
-
-
4644288902
-
Novel concentration-killing curve method for estimation of bactericidal potency of antibiotics in an in vitro dynamic model
-
Liu YQ, Zhang YZ, Gao PJ (2004) Novel concentration-killing curve method for estimation of bactericidal potency of antibiotics in an in vitro dynamic model. Antimicrob Agents Chemother 48: 3884-3891
-
(2004)
Antimicrob Agents Chemother
, vol.48
, pp. 3884-3891
-
-
Liu, Y.Q.1
Zhang, Y.Z.2
Gao, P.J.3
-
48
-
-
34250356440
-
Exploitation of structural and regulatory diversity in glutamate racemases
-
Lundqvist T, Fisher SL, Kern G, Folmer RH, Xue Y, Newton DT, Keating TA, Alm RA, de Jonge BL (2007) Exploitation of structural and regulatory diversity in glutamate racemases. Nature 447: 817-822
-
(2007)
Nature
, vol.447
, pp. 817-822
-
-
Lundqvist, T.1
Fisher, S.L.2
Kern, G.3
Folmer, R.H.4
Xue, Y.5
Newton, D.T.6
Keating, T.A.7
Alm, R.A.8
De Jonge, B.L.9
-
49
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma H, Zeng AP (2003) Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 19: 270-277
-
(2003)
Bioinformatics
, vol.19
, pp. 270-277
-
-
Ma, H.1
Zeng, A.P.2
-
50
-
-
0037333881
-
Genome sequence of Vibrio parahaemolyticus: A pathogenic mechanism distinct from that of v cholerae
-
Makino K, Oshima K, Kurokawa K, Yokoyama K, Uda T, Tagomori K, Iijima Y, Najima M, Nakano M, Yamashita A, Kubota Y, Kimura S, Yasunaga T, Honda T, Shinagawa H, Hattori M, Iida T (2003) Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Lancet 361: 743-749
-
(2003)
Lancet
, vol.361
, pp. 743-749
-
-
Makino, K.1
Oshima, K.2
Kurokawa, K.3
Yokoyama, K.4
Uda, T.5
Tagomori, K.6
Iijima, Y.7
Najima, M.8
Nakano, M.9
Yamashita, A.10
Kubota, Y.11
Kimura, S.12
Yasunaga, T.13
Honda, T.14
Shinagawa, H.15
Hattori, M.16
Iida, T.17
-
53
-
-
0023892552
-
A novel suicide vector and its use in construction of insertion mutations: Osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR
-
Miller VL, Mekalanos JJ (1988) A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J Bacteriol 170: 2575-2583
-
(1988)
J Bacteriol
, vol.170
, pp. 2575-2583
-
-
Miller, V.L.1
Mekalanos, J.J.2
-
54
-
-
33644557421
-
When will the genomics investment pay off for antibacterial discovery?
-
Mills SD (2006) When will the genomics investment pay off for antibacterial discovery? Biochem Pharmacol 71: 1096-1102
-
(2006)
Biochem Pharmacol
, vol.71
, pp. 1096-1102
-
-
Mills, S.D.1
-
55
-
-
0029913592
-
Flagellin A is essential for the virulence of Vibrio anguillarum
-
Milton DL, O'Toole R, Horstedt P, Wolf-Watz H (1996) Flagellin A is essential for the virulence of Vibrio anguillarum. J Bacteriol 178: 1310-1319
-
(1996)
J Bacteriol
, vol.178
, pp. 1310-1319
-
-
Milton, D.L.1
O'Toole, R.2
Horstedt, P.3
Wolf-Watz, H.4
-
56
-
-
41149163825
-
Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1
-
Oberhardt MA, Puchalka J, Fryer KE, Martins dos Santos VA, Papin JA (2008) Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1. J Bacteriol 190: 2790-2803
-
(2008)
J Bacteriol
, vol.190
, pp. 2790-2803
-
-
Oberhardt, M.A.1
Puchalka, J.2
Fryer, K.E.3
Martins Dos Santos, V.A.4
Papin, J.A.5
-
57
-
-
70349770739
-
Constraints-based genome-scale metabolic simulation for systems metabolic engineering
-
Park JM, Kim TY, Lee SY (2009) Constraints-based genome-scale metabolic simulation for systems metabolic engineering. Biotechnol Adv 27: 979-988
-
(2009)
Biotechnol Adv
, vol.27
, pp. 979-988
-
-
Park, J.M.1
Kim, T.Y.2
Lee, S.Y.3
-
58
-
-
29644441245
-
Identification of the Vibrio vulnificus wbpP gene and evaluation of its role in virulence
-
Park NY, Lee JH, Kim MW, Jeong HG, Lee BC, Kim TS, Choi SH (2006) Identification of the Vibrio vulnificus wbpP gene and evaluation of its role in virulence. Infect Immun 74: 721-728
-
(2006)
Infect Immun
, vol.74
, pp. 721-728
-
-
Park, N.Y.1
Lee, J.H.2
Kim, M.W.3
Jeong, H.G.4
Lee, B.C.5
Kim, T.S.6
Choi, S.H.7
-
59
-
-
0026030839
-
Vibrio vulnificus septicemia in Korea: Clinical and epidemiologic findings in seventy patients
-
Park SD, Shon HS, Joh NJ (1991) Vibrio vulnificus septicemia in Korea: clinical and epidemiologic findings in seventy patients. J Am Acad Dermatol 24: 397-403
-
(1991)
J Am Acad Dermatol
, vol.24
, pp. 397-403
-
-
Park, S.D.1
Shon, H.S.2
Joh, N.J.3
-
61
-
-
33645838396
-
Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen
-
Quirke AM, Reen FJ, Claesson MJ, Boyd EF (2006) Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen. Bioinformatics 22: 905-910
-
(2006)
Bioinformatics
, vol.22
, pp. 905-910
-
-
Quirke, A.M.1
Reen, F.J.2
Claesson, M.J.3
Boyd, E.F.4
-
62
-
-
0032145410
-
Characterization of Vibrio vulnificus isolated from cockles (Anadara granosa): Antimicrobial resistance, plasmid profiles and random amplification of polymorphic DNA analysis
-
Radu S, Elhadi N, Hassan Z, Rusul G, Lihan S, Fifadara N, Yuherman, Purwati E (1998) Characterization of Vibrio vulnificus isolated from cockles (Anadara granosa): antimicrobial resistance, plasmid profiles and random amplification of polymorphic DNA analysis. FEMS Microbiol Lett 165: 139-143
-
(1998)
FEMS Microbiol Lett
, vol.165
, pp. 139-143
-
-
Radu, S.1
Elhadi, N.2
Hassan, Z.3
Rusul, G.4
Lihan, S.5
Fifadara, N.6
Yuherman Purwati, E.7
-
64
-
-
55449113709
-
Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes
-
Ren Q, Paulsen IT (2005) Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes. PLoS Comput Biol 1: e27
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Ren, Q.1
Paulsen, I.T.2
-
65
-
-
0035478823
-
The non-mevalonate pathway of isoprenoids: Genes, enzymes and intermediates
-
Rohdich F, Kis K, Bacher A, Eisenreich W (2001) The non-mevalonate pathway of isoprenoids: genes, enzymes and intermediates. Curr Opin Chem Biol 5: 535-540
-
(2001)
Curr Opin Chem Biol
, vol.5
, pp. 535-540
-
-
Rohdich, F.1
Kis, K.2
Bacher, A.3
Eisenreich, W.4
-
66
-
-
20044369348
-
Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners
-
Ruby EG, Urbanowski M, Campbell J, Dunn A, Faini M, Gunsalus R, Lostroh P, Lupp C, McCann J, Millikan D, Schaefer A, Stabb E, Stevens A, Visick K, Whistler C, Greenberg EP (2005) Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proc Natl Acad Sci USA 102: 3004-3009
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 3004-3009
-
-
Ruby, E.G.1
Urbanowski, M.2
Campbell, J.3
Dunn, A.4
Faini, M.5
Gunsalus, R.6
Lostroh, P.7
Lupp, C.8
McCann, J.9
Millikan, D.10
Schaefer, A.11
Stabb, E.12
Stevens, A.13
Visick, K.14
Whistler, C.15
Greenberg, E.P.16
-
67
-
-
75749105082
-
Blueprint for antimicrobial hit discovery targeting metabolic networks
-
Shen Y, Liu J, Estiu G, Isin B, Ahn YY, Lee DS, Barabasi AL, Kapatral V, Wiest O, Oltvai ZN (2010) Blueprint for antimicrobial hit discovery targeting metabolic networks. Proc Natl Acad Sci USA 107: 1082-1087
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 1082-1087
-
-
Shen, Y.1
Liu, J.2
Estiu, G.3
Isin, B.4
Ahn, Y.Y.5
Lee, D.S.6
Barabasi, A.L.7
Kapatral, V.8
Wiest, O.9
Oltvai, Z.N.10
-
68
-
-
33845894155
-
Multi-targeting by monotherapeutic antibacterials
-
Silver LL (2007) Multi-targeting by monotherapeutic antibacterials. Nat Rev Drug Discov 6: 41-55
-
(2007)
Nat Rev Drug Discov
, vol.6
, pp. 41-55
-
-
Silver, L.L.1
-
69
-
-
34249719140
-
Phosphinate inhibitors of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: L-lysine ligase (MurE)
-
Strancar K, Boniface A, Blanot D, Gobec S (2007) Phosphinate inhibitors of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: L-lysine ligase (MurE). Arch Pharm (Weinheim) 340: 127-134
-
(2007)
Arch Pharm (Weinheim)
, vol.340
, pp. 127-134
-
-
Strancar, K.1
Boniface, A.2
Blanot, D.3
Gobec, S.4
-
70
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
71
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele I, Palsson BO (2010) A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat Protoc 5: 93-121
-
(2010)
Nat Protoc
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
-
72
-
-
23644452487
-
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single- and double-deletion mutants
-
Thiele I, Vo TD, Price ND, Palsson BO (2005) Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. J Bacteriol 187: 5818-5830
-
(2005)
J Bacteriol
, vol.187
, pp. 5818-5830
-
-
Thiele, I.1
Vo, T.D.2
Price, N.D.3
Palsson, B.O.4
-
73
-
-
45049086683
-
Examination of intrinsic sulfonamide resistance in Bacillus anthracis: A novel assay for dihydropteroate synthase
-
Valderas MW, Andi B, Barrow WW, Cook PF (2008) Examination of intrinsic sulfonamide resistance in Bacillus anthracis: a novel assay for dihydropteroate synthase. Biochim Biophys Acta 1780: 848-853
-
(2008)
Biochim Biophys Acta
, vol.1780
, pp. 848-853
-
-
Valderas, M.W.1
Andi, B.2
Barrow, W.W.3
Cook, P.F.4
-
74
-
-
70350326281
-
In vitro activity of ceftaroline against methicillin-resistant Staphylococcus aureus and heterogeneous vancomycin-intermediate S. aureus in a hollowfiber model
-
Vidaillac C, Leonard SN, Rybak MJ (2009) In vitro activity of ceftaroline against methicillin-resistant Staphylococcus aureus and heterogeneous vancomycin-intermediate S. aureus in a hollowfiber model. Antimicrob Agents Chemother 53: 4712-4717
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 4712-4717
-
-
Vidaillac, C.1
Leonard, S.N.2
Rybak, M.J.3
-
75
-
-
0345839252
-
Where will new antibiotics come from?
-
Walsh C (2003) Where will new antibiotics come from? Nat Rev Microbiol 1: 65-70
-
(2003)
Nat Rev Microbiol
, vol.1
, pp. 65-70
-
-
Walsh, C.1
-
76
-
-
34248209503
-
Refined medium for direct isolation of Vibrio vulnificus from oyster tissue and seawater
-
Warner E, Oliver JD (2007) Refined medium for direct isolation of Vibrio vulnificus from oyster tissue and seawater. Appl Environ Microbiol 73: 3098-3100
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3098-3100
-
-
Warner, E.1
Oliver, J.D.2
|