-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
2942659840
-
Complex networks: Augmenting the framework for the study of complex systems
-
Amaral,L.A.N. and Ottino,J. (2004) Complex networks: Augmenting the framework for the study of complex systems. Eur. Phys. J. B, 38 147-162.
-
(2004)
Eur. Phys. J. B
, vol.38
, pp. 147-162
-
-
Amaral, L.A.N.1
Ottino, J.2
-
3
-
-
0033847734
-
The millennium bugs the need for and development of new antibacterials
-
Bax,R. et al. (2000) The millennium bugs the need for and development of new antibacterials. Int. J. Antimicrob. Agents, 16, 51-59.
-
(2000)
Int. J. Antimicrob. Agents
, vol.16
, pp. 51-59
-
-
Bax, R.1
-
4
-
-
0036084258
-
TTD: Therapeutic Target Database
-
Chen,X. et al. (2002) TTD: Therapeutic Target Database. Nucleic Acids Res., 30, 412-415.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 412-415
-
-
Chen, X.1
-
5
-
-
26244464025
-
Comparing community structure identification
-
Danon,L. et al. (2005) Comparing community structure identification. J. Stat. Mech.: Theor. Exp., P09008.
-
(2005)
J. Stat. Mech.: Theor. Exp
-
-
Danon, L.1
-
6
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
Edwards,J.S. and Palsson,B.Ø. (2000a) The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities. Proc. Natl Acad. Sci. USA, 97, 5528-5533.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.2
-
7
-
-
0034519221
-
Robustness analysis of the Escherichia coli metabolic network
-
Edwards,J.S. and Palsson,B.Ø. (2000b) Robustness analysis of the Escherichia coli metabolic network. Biotechnol. Prog., 16, 927-939.
-
(2000)
Biotechnol. Prog
, vol.16
, pp. 927-939
-
-
Edwards, J.S.1
Palsson, B.2
-
8
-
-
0141504252
-
Experimental determination and system level analysis of essential genes in Escherichia coli MG1655
-
Gerdes,S.Y. et al. (2003) Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. J. Bacteriol., 185, 5673-5684.
-
(2003)
J. Bacteriol
, vol.185
, pp. 5673-5684
-
-
Gerdes, S.Y.1
-
9
-
-
0037062448
-
Community structure in social and biological networks
-
Girvan,M. and Newman,M.E.J. (2002) Community structure in social and biological networks. Proc. Natl Acad. Sci, USA, 99, 7821-7826.
-
(2002)
Proc. Natl Acad. Sci, USA
, vol.99
, pp. 7821-7826
-
-
Girvan, M.1
Newman, M.E.J.2
-
10
-
-
0031715499
-
LIGAND: Chemical database for enzyme reactions
-
Goto,S. et al. (1998) LIGAND: Chemical database for enzyme reactions. Bioinformaties, 14, 591-599.
-
(1998)
Bioinformaties
, vol.14
, pp. 591-599
-
-
Goto, S.1
-
11
-
-
14644420038
-
Cartography of complex networks: Modules and universal roles
-
Guimerà,R. and Amaral,L.A.N. (2005a) Cartography of complex networks: modules and universal roles. J. Star. Mech.: Theor. Exp., P02001.
-
(2005)
J. Star. Mech.: Theor. Exp
-
-
Guimerà, R.1
Amaral, L.A.N.2
-
12
-
-
14644396645
-
Functional cartography of complex metabolic networks
-
Guimerà,R. and Amaral,L.A.N. (2005b) Functional cartography of complex metabolic networks. Nature, 433, 895-900.
-
(2005)
Nature
, vol.433
, pp. 895-900
-
-
Guimerà, R.1
Amaral, L.A.N.2
-
13
-
-
85061690748
-
Modularity from fluctuations in random graphs and complex networks. Phys. Rev. E, 70, art. no. 025101. Guimerà,R,Sales-Pardo,M. and Amaral,L.A.N. (2007) Classes of complex networks defined by role-to-role connectivity profiles
-
Guimerà,R. et al. (2004) Modularity from fluctuations in random graphs and complex networks. Phys. Rev. E, 70, art. no. 025101. Guimerà,R,Sales-Pardo,M. and Amaral,L.A.N. (2007) Classes of complex networks defined by role-to-role connectivity profiles, Nature. Phys., 3, 63-69.
-
(2004)
Nature. Phys
, vol.3
, pp. 63-69
-
-
Guimerà, R.1
-
14
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han,J.-D.J. et al. (2004) Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430, 88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.-D.J.1
-
15
-
-
0033518234
-
From molecular to modular biology
-
Hartwell,L.H. et al. (1999) From molecular to modular biology. Nature, 402, C47-C52.
-
(1999)
Nature
, vol.402
-
-
Hartwell, L.H.1
-
16
-
-
11844303236
-
Clustered organization of cortical connectivity
-
Hilgetag,C.C. and Kaiser,M. (2004) Clustered organization of cortical connectivity. Neuroinformatics, 2, 353-360.
-
(2004)
Neuroinformatics
, vol.2
, pp. 353-360
-
-
Hilgetag, C.C.1
Kaiser, M.2
-
17
-
-
0037345719
-
Subnetwork hierarchies of biochemical pathways
-
Holme,P. et al. (2003) Subnetwork hierarchies of biochemical pathways. Bioinformatics, 19, 532-538.
-
(2003)
Bioinformatics
, vol.19
, pp. 532-538
-
-
Holme, P.1
-
18
-
-
85036419255
-
-
Itzkovitz,S. et al. (2004) Reply to comment on 'subgraphs in random networks'. Phys. Rev. E, 70, art. no. 058102.
-
Itzkovitz,S. et al. (2004) Reply to "comment on 'subgraphs in random networks'". Phys. Rev. E, 70, art. no. 058102.
-
-
-
-
19
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong,H. et al. (2000) The large-scale organization of metabolic networks. Nature, 407, 651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
-
20
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong,H. et al. (2001) Lethality and centrality in protein networks. Nature, 411, 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
-
21
-
-
0033982936
-
Kegg: Kyoto encyclopedia of genes and genomes
-
Kanehisa,M. and Goto,S. (2000) Kegg: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
22
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Kanehisa,M. et al. (2006) From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res., 34, D354-D357.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kanehisa, M.1
-
23
-
-
1042269472
-
Minimal cut sets in biochemical reaction networks
-
Klamt,S. and Gilles,E.D. (2004) Minimal cut sets in biochemical reaction networks. Bioinformatics, 20, 226-234.
-
(2004)
Bioinformatics
, vol.20
, pp. 226-234
-
-
Klamt, S.1
Gilles, E.D.2
-
24
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma,H. and Zeng,A.-P. (2003) Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics, 19, 270-277.
-
(2003)
Bioinformatics
, vol.19
, pp. 270-277
-
-
Ma, H.1
Zeng, A.-P.2
-
25
-
-
0037012880
-
Specificity and stability in topology of protein networks
-
Maslov,S. and Sneppen,K. (2002) Specificity and stability in topology of protein networks. Science, 296, 910-913.
-
(2002)
Science
, vol.296
, pp. 910-913
-
-
Maslov, S.1
Sneppen, K.2
-
26
-
-
0038718854
-
The structure and function of complex networks
-
Newman,M.E.J. (2003) The structure and function of complex networks. SIAM Review, 45, 167-256.
-
(2003)
SIAM Review
, vol.45
, pp. 167-256
-
-
Newman, M.E.J.1
-
27
-
-
37649028224
-
Finding and evaluating community structure in networks
-
art. no. 026113
-
Newman,M.E.J. and Girvan,M. (2004) Finding and evaluating community structure in networks. Phys. Rev. E, 69, art. no. 026113.
-
(2004)
Phys. Rev. E
, vol.69
-
-
Newman, M.E.J.1
Girvan, M.2
-
28
-
-
18944391092
-
Biological networks and analysis of experimental data in drug discovery
-
Nikolsky,Y. et al. (2005) Biological networks and analysis of experimental data in drug discovery. Drug. Discov. Today, 10 653-662.
-
(2005)
Drug. Discov. Today
, vol.10
, pp. 653-662
-
-
Nikolsky, Y.1
-
29
-
-
12944302098
-
Lack of development of new antimicrobial drugs: A potential serious threat to public health
-
Norrby,S.R. et al. (2005) Lack of development of new antimicrobial drugs: A potential serious threat to public health. Lancet Infect. Dis., 5, 115-119.
-
(2005)
Lancet Infect. Dis
, vol.5
, pp. 115-119
-
-
Norrby, S.R.1
-
30
-
-
24044504447
-
Functional essentiality from topology features in metabolic networks: A case study in yeast
-
Palumbo,M.C. et al. (2005) Functional essentiality from topology features in metabolic networks: A case study in yeast. FEBS Lett., 579, 4642-4646.
-
(2005)
FEBS Lett
, vol.579
, pp. 4642-4646
-
-
Palumbo, M.C.1
-
31
-
-
2942624207
-
Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast
-
Papp,B. et al. (2004) Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature, 429, 661-664.
-
(2004)
Nature
, vol.429
, pp. 661-664
-
-
Papp, B.1
-
32
-
-
33747890136
-
Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks
-
Rahman,S.A. and Schomburg,D. (2006) Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks. Bioinformatics, 22, 1767-1774.
-
(2006)
Bioinformatics
, vol.22
, pp. 1767-1774
-
-
Rahman, S.A.1
Schomburg, D.2
-
33
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz,E. et al. (2002) Hierarchical organization of modularity in metabolic networks. Science, 297, 1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
-
34
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed,J.L. et al. (2003) An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) Genome Biol., 4, R54.
-
(2003)
Genome Biol
, vol.4
-
-
Reed, J.L.1
-
35
-
-
2342595765
-
Trends in antimicrobial drug development: Implications for the future
-
Spellberg,B. et al. (2004) Trends in antimicrobial drug development: Implications for the future. Clin. Infect. Dis., 38, 1279-1286.
-
(2004)
Clin. Infect. Dis
, vol.38
, pp. 1279-1286
-
-
Spellberg, B.1
-
36
-
-
0034322846
-
Connectivity and complexity: The relationship between neuroanatomy and brain dynamics
-
Sporns,O. et al. (2000) Connectivity and complexity: The relationship between neuroanatomy and brain dynamics. Neural Netw. 13, 909-922.
-
(2000)
Neural Netw
, vol.13
, pp. 909-922
-
-
Sporns, O.1
-
37
-
-
18144413962
-
Scale-rich metabolic networks
-
art. no. 168101
-
Tanaka,R.(2005) Scale-rich metabolic networks. Phys. Rev. Lett., 94, art. no. 168101.
-
(2005)
Phys. Rev. Lett
, vol.94
-
-
Tanaka, R.1
-
38
-
-
23644452487
-
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single- and double-deletion mutants
-
Thiele,I. et al. (2005) Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single- and double-deletion mutants. J. Bacteriol., 187, 5818-5830.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5818-5830
-
-
Thiele, I.1
-
39
-
-
14344263352
-
Distributed robustness versus redundancy as causes of mutational robustness
-
Wagner,A. (2005) Distributed robustness versus redundancy as causes of mutational robustness. Bioessays, 27, 176-188.
-
(2005)
Bioessays
, vol.27
, pp. 176-188
-
-
Wagner, A.1
-
40
-
-
0035823264
-
The small world inside large metabolic networks
-
Wagner, A. and Fell, D.A. (2001) The small world inside large metabolic networks. Proc. Roy. Soc. B, 268, 1803-1810.
-
(2001)
Proc. Roy. Soc. B
, vol.268
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.A.2
-
41
-
-
0003982378
-
-
4th edn. Duxbury Press, Belmont, CA, USA
-
Winston,W.L. and Venkataramanan,M. (2002) Introduction to Mathematical Programming: Applications and Algorithms. 4th edn. Duxbury Press, Belmont, CA, USA.
-
(2002)
Introduction to Mathematical Programming: Applications and Algorithms
-
-
Winston, W.L.1
Venkataramanan, M.2
|