-
1
-
-
38749106195
-
Structure and mechanism of the M2 proton channel of influenza A virus
-
Schnell, J. R.; Chou, J. J. Structure and mechanism of the M2 proton channel of influenza A virus. Nature, 2008, 451, 591-595.
-
(2008)
Nature
, vol.451
, pp. 591-595
-
-
Schnell, J.R.1
Chou, J.J.2
-
2
-
-
71449091133
-
Solution structure and functional analysis of the influenza B proton channel
-
Wang, J.; Pielak, R. M.; McClintock, M. A.; Chou, J. J. Solution structure and functional analysis of the influenza B proton channel. Nat. Struct. Mol. Biol., 2009, 16, 1267-1271.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1267-1271
-
-
Wang, J.1
Pielak, R.M.2
McClintock, M.A.3
Chou, J.J.4
-
4
-
-
2642517838
-
Insights from modelling the 3D structure of the extracellular domain of alpha7 nicotinic acetylcholine receptor
-
Chou, K. C. Insights from modelling the 3D structure of the extracellular domain of alpha7 nicotinic acetylcholine receptor. Biochem. Biophys. Res. Commun., 2004, 319, 433-438.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.319
, pp. 433-438
-
-
Chou, K.C.1
-
5
-
-
3242792729
-
Review: Structural bioinformatics and its impact to biomedical science
-
Chou, K. C. Review: Structural bioinformatics and its impact to biomedical science. Curr. Med. Chem., 2004, 11, 2105-2134.
-
(2004)
Curr. Med. Chem.
, vol.11
, pp. 2105-2134
-
-
Chou, K.C.1
-
6
-
-
0028904113
-
The convergence-divergence duality in lectin domains of the selectin family and its implications
-
Chou, K. C. The convergence-divergence duality in lectin domains of the selectin family and its implications. FEBS Lett., 1995, 363, 123-126.
-
(1995)
FEBS Lett.
, vol.363
, pp. 123-126
-
-
Chou, K.C.1
-
7
-
-
1642377868
-
Modelling extracellular domains of GABA-A receptors: Subtypes 1, 2, 3, and 5
-
Chou, K. C. Modelling extracellular domains of GABA-A receptors: Subtypes 1, 2, 3, and 5. Biochem. Biophys. Res. Commun., 2004, 316, 636-642.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.316
, pp. 636-642
-
-
Chou, K.C.1
-
8
-
-
17444427671
-
Modeling the tertiary structure of human cathepsin-E
-
Chou, K. C., Modeling the tertiary structure of human cathepsin-E. Biochem. Biophys. Res. Commun., 2005, 331, 56-60.
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.331
, pp. 56-60
-
-
Chou, K.C.1
-
9
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo amino acid composition
-
Chou, K. C. Prediction of protein cellular attributes using pseudo amino acid composition. PROTEINS: Struct. Funct. Genet., 2001, 43, 246-255.
-
(2001)
PROTEINS: Struct. Funct. Genet.
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
10
-
-
72449203319
-
Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
-
Chou, K. C. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Curr. Proteomics, 2009, 6, 262-274.
-
(2009)
Curr. Proteomics
, vol.6
, pp. 262-274
-
-
Chou, K.C.1
-
11
-
-
0038636605
-
Support vector machines for predicting membrane protein types by using functional domain composition
-
Cai, Y. D.; Zhou, G. P.; Chou, K. C. Support vector machines for predicting membrane protein types by using functional domain composition. Biophys. J., 2003, 84, 3257-3263.
-
(2003)
Biophys. J.
, vol.84
, pp. 3257-3263
-
-
Cai, Y.D.1
Zhou, G.P.2
Chou, K.C.3
-
12
-
-
64749096548
-
GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
-
Xiao, X.; Wang, P.; Chou, K. C. GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes. J. Comput. Chem., 2009, 30, 1414-1423.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1414-1423
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
13
-
-
3843117638
-
Predicting protein structural class by functional domain composition
-
Chou, K. C.; Cai, Y. D. Predicting protein structural class by functional domain composition. Biochem. Biophys. Res. Commun., 2004, 321, 1007-1009.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.321
, pp. 1007-1009
-
-
Chou, K.C.1
Cai, Y.D.2
-
14
-
-
53149132374
-
ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information
-
Chou, K. C.; Shen, H. B. ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochem. Biophys. Res. Commun, 2008, 376, 321-325.
-
(2008)
Biochem. Biophys. Res. Commun
, vol.376
, pp. 321-325
-
-
Chou, K.C.1
Shen, H.B.2
-
15
-
-
77953298113
-
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0
-
Chou, K. C.; Shen, H. B. A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0. PLoS ONE, 2010, 5, e9931.
-
(2010)
PLoS ONE
, vol.5
-
-
Chou, K.C.1
Shen, H.B.2
-
16
-
-
77956199192
-
Plant-mPLoc: A top-down strategy to augment the power for predicting plant protein subcellular localization
-
Chou, K. C.; Shen, H. B. Plant-mPLoc: A top-down strategy to augment the power for predicting plant protein subcellular localization. PLoS ONE, 2010, 5, e11335.
-
(2010)
PLoS ONE
, vol.5
-
-
Chou, K.C.1
Shen, H.B.2
-
17
-
-
77954074097
-
Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition
-
Chen, L.; Feng, K. Y.; Cai, Y. D.; Chou, K. C.; Li, H. P. Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition. BMC Bioinformatics, 2010, 11, 293.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 293
-
-
Chen, L.1
Feng, K.Y.2
Cai, Y.D.3
Chou, K.C.4
Li, H.P.5
-
18
-
-
10744230917
-
Automated prediction of CASP-5 structures using the Robetta server
-
Chivian, D.; Kim, D. E.; Malmström, L.; Bradley, P.; Robertson, T.; Murphy, P.; Strauss, C. E. M.; Bonneau, R.; Rohl, C. A.; Baker, D. Automated prediction of CASP-5 structures using the Robetta server. Proteins, 2003, 53(S6), 524-533.
-
(2003)
Proteins
, vol.53
, Issue.S6
, pp. 524-533
-
-
Chivian, D.1
Kim, D.E.2
Malmström, L.3
Bradley, P.4
Robertson, T.5
Murphy, P.6
Strauss, C.E.M.7
Bonneau, R.8
Rohl, C.A.9
Baker, D.10
-
19
-
-
23444449882
-
Building protein structure and function from modular units
-
Campbell, I. D.; Downing, A. K. Building protein structure and function from modular units. Trends Biotechnol., 1994, 12(5), 168-172.
-
(1994)
Trends Biotechnol.
, vol.12
, Issue.5
, pp. 168-172
-
-
Campbell, I.D.1
Downing, A.K.2
-
21
-
-
0035815633
-
Identification of cell-binding sites on the Laminin a5 n-terminal domain by site-directed mutagenesis
-
Nielsen, P.; Yamada, Y. Identification of cell-binding sites on the Laminin a5 n-terminal domain by site-directed mutagenesis. J. Biol. Chem., 2001, 276, 10906-10912.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10906-10912
-
-
Nielsen, P.1
Yamada, Y.2
-
23
-
-
85056046169
-
Protein domain boundary predictions: A structural biology perspective
-
Kirillovaa, S.; Kumara, S.; Carugo, O. Protein domain boundary predictions: A structural biology perspective. Open Biochem. J., 2009, 3, 1-8.
-
(2009)
Open Biochem. J.
, vol.3
, pp. 1-8
-
-
Kirillovaa, S.1
Kumara, S.2
Carugo, O.3
-
24
-
-
17844363963
-
Pprodo: Prediction of protein domain boundaries using neural networks
-
Sim, J.; Kim, S. Y.; Lee, J. Pprodo: Prediction of protein domain boundaries using neural networks. Proteins, 2005, 59, 627-632.
-
(2005)
Proteins
, vol.59
, pp. 627-632
-
-
Sim, J.1
Kim, S.Y.2
Lee, J.3
-
25
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
Altschul, S. F.; Madden, T. L.; Schaffer, A. A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. J. Gapped blast and psi-blast: A new generation of protein database search programs. Nucleic Acids Res., 1997, 25(17), 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
26
-
-
0033957841
-
Prodom and prodomcg: Tools for protein domain analysis and whole genome comparisons
-
Corpet, F.; Servant, F.; Gouzy, J.; Kahn, D. Prodom and prodomcg: Tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res., 2000, 28, 267-269.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 267-269
-
-
Corpet, F.1
Servant, F.2
Gouzy, J.3
Kahn, D.4
-
27
-
-
0036893072
-
Rapid protein domain assignment from amino acid sequence using predicted secondary structure
-
Marsden, R. L.; McGuffin, L. J.; Jones, D. T. Rapid protein domain assignment from amino acid sequence using predicted secondary structure. Protein Sci., 200, 11, 2814-2824.
-
Protein Sci.
, vol.200
, Issue.11
, pp. 2814-2824
-
-
Marsden, R.L.1
McGuffin, L.J.2
Jones, D.T.3
-
28
-
-
41949117705
-
Improved general regression network for protein domain boundary prediction
-
Yoo, P. D.; Sikder, A. R.; Zhou, B. B.; Zomaya, A. Y. Improved general regression network for protein domain boundary prediction. BMC Bioinformatics, 2009, 9(Suppl 1), S12.
-
(2009)
BMC Bioinformatics
, vol.9
, Issue.SUPPL.. 1
-
-
Yoo, P.D.1
Sikder, A.R.2
Zhou, B.B.3
Zomaya, A.Y.4
-
29
-
-
23144465987
-
SCRATCH: A protein structure and structural feature prediction server
-
(web server)
-
Cheng, J.; Randall, A. Z.; Sweredoski, M. J.; Baldi, P. SCRATCH: A protein structure and structural feature prediction server. Nucleic Acids Res., 2005, 33, (web server), w72-w76.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Cheng, J.1
Randall, A.Z.2
Sweredoski, M.J.3
Baldi, P.4
-
30
-
-
3042810008
-
Sequence-based prediction of protein domains
-
Liu, J.; Rost, B. Sequence-based prediction of protein domains. Nucleic Acids Res., 2004, 32(12), 3522-3530.
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.12
, pp. 3522-3530
-
-
Liu, J.1
Rost, B.2
-
31
-
-
3142680264
-
Automatic prediction of protein domains from sequence information using a hybrid learning system
-
Nagarajan, N.; Yona, G. Automatic prediction of protein domains from sequence information using a hybrid learning system. Bioinformatics, 2004, 20, 1335-1360.
-
(2004)
Bioinformatics
, vol.20
, pp. 1335-1360
-
-
Nagarajan, N.1
Yona, G.2
-
32
-
-
32144434539
-
SSEP-Domain: Protein domain prediction by alignment of secondary structure elements and profiles
-
Gewehr, J. E.; Zimmer, R. SSEP-Domain: Protein domain prediction by alignment of secondary structure elements and profiles. Bioinformatics, 2006, 22(2), 181-187.
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 181-187
-
-
Gewehr, J.E.1
Zimmer, R.2
-
33
-
-
45249093424
-
DomNet: Protein domain boundary prediction using enhanced general regression network and new profiles
-
Yoo, P. D.; Sikder, A. R.; Taheri, J.; Zhou, B. B.; Zomaya, A. Y. DomNet: Protein domain boundary prediction using enhanced general regression network and new profiles. IEEE Trans. Nanobiosci., 2008, 7(2), 172-181.
-
(2008)
IEEE Trans. Nanobiosci.
, vol.7
, Issue.2
, pp. 172-181
-
-
Yoo, P.D.1
Sikder, A.R.2
Taheri, J.3
Zhou, B.B.4
Zomaya, A.Y.5
-
34
-
-
40549099733
-
Sequence-based protein domain boundary prediction using BP neural network with various property profiles
-
Ye, L.; Liu, T.; Wu, Z.; Zhou, R. Sequence-based protein domain boundary prediction using BP neural network with various property profiles. Proteins, 2008, 71, 300-307.
-
(2008)
Proteins
, vol.71
, pp. 300-307
-
-
Ye, L.1
Liu, T.2
Wu, Z.3
Zhou, R.4
-
35
-
-
0037196307
-
Support vector machines for predicting HIV protease cleavage sites in protein
-
Cai, Y. D.; Liu, X. J.; Xu, X. B.; Chou, K. C. Support vector machines for predicting HIV protease cleavage sites in protein. J. Comput. Chem., 2002, 23, 267-274.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 267-274
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Chou, K.C.4
-
36
-
-
0842326624
-
Application of SVM to predict membrane protein types
-
Cai, Y. D.; Pong-Wong, R.; Feng, K.; Jen, C. H.; Chou, K. C. Application of SVM to predict membrane protein types. J. Theor. Biol., 2004, 226, 373-376.
-
(2004)
J. Theor. Biol.
, vol.226
, pp. 373-376
-
-
Cai, Y.D.1
Pong-Wong, R.2
Feng, K.3
Jen, C.H.4
Chou, K.C.5
-
37
-
-
0036154920
-
Support vector machines for predicting the specificity of GalNAc-transferase
-
Cai, Y. D.; Liu, X. J.; Xu, X. B.; Chou, K. C. Support vector machines for predicting the specificity of GalNAc-transferase. Peptides, 2002, 23, 205-208.
-
(2002)
Peptides
, vol.23
, pp. 205-208
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Chou, K.C.4
-
38
-
-
0036007085
-
Prediction of protein structural classes by support vector machines
-
Cai, Y. D.; Liu, X. J.; Xu, X. B.; Chou, K. C. Prediction of protein structural classes by support vector machines. Comput. Chem., 2002, 26, 293-296.
-
(2002)
Comput. Chem.
, vol.26
, pp. 293-296
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Chou, K.C.4
-
39
-
-
0037195776
-
Using functional domain composition and support vector machines for prediction of protein subcellular location
-
Chou, K. C.; Cai, Y. D. Using functional domain composition and support vector machines for prediction of protein subcellular location. J. Biol. Chem., 2002, 277, 45765-45769.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 45765-45769
-
-
Chou, K.C.1
Cai, Y.D.2
-
40
-
-
0035995959
-
Support vector machines for the classification and prediction of beta-turn types
-
Cai, Y. D.; Liu, X. J.; Xu, X. B.; Chou, K. C. Support vector machines for the classification and prediction of beta-turn types. J. Pept. Sci., 2002, 8, 297-301.
-
(2002)
J. Pept. Sci.
, vol.8
, pp. 297-301
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Chou, K.C.4
-
41
-
-
0037258751
-
Support vector machines for prediction of protein signal sequences and their cleavage sites
-
Cai, Y. D.; Lin, S.; Chou, K. C. Support vector machines for prediction of protein signal sequences and their cleavage sites. Peptides, 2003, 24, 159-161.
-
(2003)
Peptides
, vol.24
, pp. 159-161
-
-
Cai, Y.D.1
Lin, S.2
Chou, K.C.3
-
42
-
-
0038304992
-
Support vector machine for predicting alpha-turn types
-
Cai, Y. D.; Feng, K. Y.; Li, Y. X.; Chou, K. C. Support vector machine for predicting alpha-turn types. Peptides, 2003, 24, 629-630.
-
(2003)
Peptides
, vol.24
, pp. 629-630
-
-
Cai, Y.D.1
Feng, K.Y.2
Li, Y.X.3
Chou, K.C.4
-
43
-
-
2642547217
-
Identify catalytic triads of serine hydrolases by support vector machines
-
Cai, Y. D.; Zhou, G. P.; Jen, C. H.; Lin, S. L.; Chou, K. C. Identify catalytic triads of serine hydrolases by support vector machines. J. Theor. Biol., 2004, 228, 551-557.
-
(2004)
J. Theor. Biol.
, vol.228
, pp. 551-557
-
-
Cai, Y.D.1
Zhou, G.P.2
Jen, C.H.3
Lin, S.L.4
Chou, K.C.5
-
44
-
-
33947385412
-
Improving the performance of DomainDiscovery of protein domain boundary assignment using interdomain linker index
-
Sikder, A. R.; Zomaya, A. Y. Improving the performance of DomainDiscovery of protein domain boundary assignment using interdomain linker index. BMC Bioinformatics, 2006, 7(Suppl 5), S6.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL.. 5
-
-
Sikder, A.R.1
Zomaya, A.Y.2
-
45
-
-
16644363065
-
Delineation of modular proteins: Domain boundary prediction from sequence information
-
Kong, L.; Ranganathan, S. Delineation of modular proteins: Domain boundary prediction from sequence information. Brief. Bioinform., 2004, 5(2), 172-192.
-
(2004)
Brief. Bioinform.
, vol.5
, Issue.2
, pp. 172-192
-
-
Kong, L.1
Ranganathan, S.2
-
46
-
-
0036878154
-
An analysis of protein domain linkers: Their classification and role in protein folding
-
George, R. A.; Heringa, J. An analysis of protein domain linkers: Their classification and role in protein folding. Protein Eng., 2002, 15, 871-879.
-
(2002)
Protein Eng.
, vol.15
, pp. 871-879
-
-
George, R.A.1
Heringa, J.2
-
47
-
-
0037460953
-
DomCut: Prediction of inter-domain linker regions in amino acid sequences
-
Suyama, M.; Ohara, O. DomCut: Prediction of inter-domain linker regions in amino acid sequences. Bioinformatics, 2003, 19(5), 673-674.
-
(2003)
Bioinformatics
, vol.19
, Issue.5
, pp. 673-674
-
-
Suyama, M.1
Ohara, O.2
-
48
-
-
21744461895
-
Armadillo: Domain boundary prediction by amino acid composition
-
Dumontier, M.; Yao, R.; Feldman, H. J.; Hogue, C. W. V. Armadillo: Domain boundary prediction by amino acid composition. J. Mol. Biol., 2005, 350, 1061-1073.
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 1061-1073
-
-
Dumontier, M.1
Yao, R.2
Feldman, H.J.3
Hogue, C.W.V.4
-
49
-
-
0037377548
-
Prediction of protein domain boundaries from sequence alone
-
Galzitskaya, O. V.; Melnik, B. S. Prediction of protein domain boundaries from sequence alone. Protein Sci., 2003, 12, 696-701.
-
(2003)
Protein Sci.
, vol.12
, pp. 696-701
-
-
Galzitskaya, O.V.1
Melnik, B.S.2
-
50
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 1982, 157, 105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
51
-
-
33645879534
-
Domain boundary prediction based on profile domain linker propensity index
-
Dong, Q.; Wang, X.; Lin, L.; Xu, Z. Domain boundary prediction based on profile domain linker propensity index. Comput. Biol. Chem., 2006, 30(2), 127-133.
-
(2006)
Comput. Biol. Chem.
, vol.30
, Issue.2
, pp. 127-133
-
-
Dong, Q.1
Wang, X.2
Lin, L.3
Xu, Z.4
-
52
-
-
68749110968
-
Exploiting three kinds of interface propensities to identify protein binding sites
-
Liu, B.; Wang, X.; Lin, L.; Dong, Q.; Wang, X. Exploiting three kinds of interface propensities to identify protein binding sites. Comput. Biol. Chem., 2009, 33, 303-311.
-
(2009)
Comput. Biol. Chem.
, vol.33
, pp. 303-311
-
-
Liu, B.1
Wang, X.2
Lin, L.3
Dong, Q.4
Wang, X.5
-
53
-
-
70450152077
-
-
International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing 2009
-
Liu, B.; Lin, L.; Wang, X.; Wang, X. In Protein Remote Homology Detection Using Order Profiles, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, 2009; pp. 255-260.
-
(2009)
Protein Remote Homology Detection Using Order Profiles
, pp. 255-260
-
-
Liu, B.1
Lin, L.2
Wang, X.3
Wang, X.4
-
54
-
-
74549143798
-
-
IEEE International Conference on Bioinformatics and Biomedicine, 2009
-
Liu, B.; Lin, L.; Wang, X.; Wang, X.; Shen, Y. In:Protein long disordered region prediction based on profile-level disorder propensities and position-specific scoring matrixes. 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009; pp 66-69.
-
(2009)
Protein Long Disordered Region Prediction Based on Profile-Level Disorder Propensities and Position-Specific Scoring Matrixes
, pp. 66-69
-
-
Liu, B.1
Lin, L.2
Wang, X.3
Wang, X.4
Shen, Y.5
-
55
-
-
0346494941
-
Scop database in 2004: Refinements integrate structure and sequence family data
-
(Database)
-
Andreeva, A.; Howorth, D.; Brenner, S. E.; Hubbard, T. J.; Chothia, C.; Murzin, A. G. Scop database in 2004: Refinements integrate structure and sequence family data. Nucleic Acids Res., 2004, 32, (Database), D226-D229.
-
Nucleic Acids Res.
, vol.2004
, Issue.32
-
-
Andreeva, A.1
Howorth, D.2
Brenner, S.E.3
Hubbard, T.J.4
Chothia, C.5
Murzin, A.G.6
-
56
-
-
0348129526
-
The ASTRAL compendium in 2004
-
(Database issue)
-
Chandonia, J. M.; Hon, G.; Walker, N. S.; L, C. L.; P, K.; Levitt, M.; Brenner, S. E. The ASTRAL Compendium in 2004. Nucleic Acids Res., 2004, 32, (Database issue), D189-D192.
-
Nucleic Acids Res.
, vol.2004
, Issue.32
-
-
Chandonia, J.M.1
Hon, G.2
Walker, N.S.L.C.L.P.K.3
Levitt, M.4
Brenner, S.E.5
-
57
-
-
0036288851
-
Characterization and prediction of linker sequences of multi-domain proteins by a neural network
-
Miyazaki, S.; Kuroda, Y.; Yokoyama, S. Characterization and prediction of linker sequences of multi-domain proteins by a neural network. J. Struct. Funct. Genomics, 2002, 2(1), 37-51.
-
(2002)
J. Struct. Funct. Genomics
, vol.2
, Issue.1
, pp. 37-51
-
-
Miyazaki, S.1
Kuroda, Y.2
Yokoyama, S.3
-
58
-
-
0031829372
-
Removing near-neighbour redundancy from large protein sequence collections
-
Holm, L.; Sander, C. Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics, 1998, 14(5), 423-429.
-
(1998)
Bioinformatics
, vol.14
, Issue.5
, pp. 423-429
-
-
Holm, L.1
Sander, C.2
-
59
-
-
0028043552
-
Position-based sequence weights
-
Henikoff, S.; Henikoff, J. G. Position-based sequence weights. J. Mol. Biol., 1994, 243, (4), 574-578.
-
(1994)
J. Mol. Biol.
, vol.243
, Issue.4
, pp. 574-578
-
-
Henikoff, S.1
Henikoff, J.G.2
-
60
-
-
0036893072
-
Rapid protein domain assignment from amino acid sequence using predicted secondary structure
-
Marsden, R. L.; McGuffin, L. J.; Jones, D. T. Rapid protein domain assignment from amino acid sequence using predicted secondary structure. Protein Sci., 2002, 11, 2814-2824.
-
(2002)
Protein Sci.
, vol.11
, pp. 2814-2824
-
-
Marsden, R.L.1
McGuffin, L.J.2
Jones, D.T.3
-
61
-
-
34250164675
-
Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
-
Dong, Q.; Wang, X.; Lin, L.; Guan, Y. Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins. BMC Bioinformatics, 2007, 8, 147.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 147
-
-
Dong, Q.1
Wang, X.2
Lin, L.3
Guan, Y.4
-
62
-
-
58149345703
-
A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis
-
Liu, B.; Wang, X.; Lin, L.; Dong, Q.; Wang, X. A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis. BMC Bioinformatics, 2008, 9, 510.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 510
-
-
Liu, B.1
Wang, X.2
Lin, L.3
Dong, Q.4
Wang, X.5
-
63
-
-
0024278714
-
Helix geometry in proteins
-
Barlow, D. J.; Thornton, J. M., Helix geometry in proteins. J. Mol. Biol., 1988, 201(3), 601-619.
-
(1988)
J. Mol. Biol.
, vol.201
, Issue.3
, pp. 601-619
-
-
Barlow, D.J.1
Thornton, J.M.2
-
64
-
-
0029157083
-
Review: Prediction of protein structural classes
-
Chou, K. C.; Zhang, C. T. Review: Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30, 275-349.
-
(1995)
Crit. Rev. Biochem. Mol. Biol.
, vol.30
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
65
-
-
34548606295
-
Review: Recent progresses in protein subcellular location prediction
-
Chou, K. C.; Shen, H. B. Review: Recent progresses in protein subcellular location prediction. Anal. Biochem., 2007, 370, 1-16.
-
(2007)
Anal. Biochem.
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
66
-
-
54749084166
-
An intriguing controversy over protein structural class prediction
-
Zhou, G. P. An intriguing controversy over protein structural class prediction. J. Protein Chem., 1998, 17, 729-738.
-
(1998)
J. Protein Chem.
, vol.17
, pp. 729-738
-
-
Zhou, G.P.1
-
67
-
-
0035400226
-
Some insights into protein structural class prediction
-
Zhou, G. P. Assa-Munt, N. Some insights into protein structural class prediction. Proteins: Struct. Funct. Genet., 2001, 44, 57-59.
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.44
, pp. 57-59
-
-
Zhou, G.P.1
Assa-Munt, N.2
-
68
-
-
64749100837
-
Predicting DNA- and RNA-binding proteins from sequences with kernel methods
-
Shao, X.; Tian, Y.; Wu, L.; Wang, Y.; Jing, L.; Deng, N. Predicting DNA- and RNA-binding proteins from sequences with kernel methods. J. Theor. Biol., 2009, 258, 289-293.
-
(2009)
J. Theor Biol.
, vol.258
, pp. 289-293
-
-
Shao, X.1
Tian, Y.2
Wu, L.3
Wang, Y.4
Jing, L.5
Deng, N.6
-
69
-
-
42749090472
-
The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
-
Lin, H. The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol., 2008, 252, 350-356.
-
(2008)
J. Theor. Biol.
, vol.252
, pp. 350-356
-
-
Lin, H.1
-
70
-
-
34247544233
-
Signal-CF: A subsite-coupled and window- fusing approach for predicting signal peptides
-
Chou, K. C.; Shen, H. B. Signal-CF: A subsite-coupled and window- fusing approach for predicting signal peptides. Biochem. Biophys. Res. Commun., 2007, 357, 633-640.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.357
, pp. 633-640
-
-
Chou, K.C.1
Shen, H.B.2
-
71
-
-
61549096128
-
Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
-
Chen, C.; Chen, L.; Zou, X.; Cai, P. Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett., 2009, 16, 27-31.
-
(2009)
Protein Pept. Lett.
, vol.16
, pp. 27-31
-
-
Chen, C.1
Chen, L.2
Zou, X.3
Cai, P.4
-
72
-
-
63449123534
-
A further step toward an optimal ensemble of classifiers for peptide classification, a case study: HIV protease
-
Nanni, L.; Lumini, A. A further step toward an optimal ensemble of classifiers for peptide classification, a case study: HIV protease. Protein Pept. Lett., 2009, 16, 163-167.
-
(2009)
Protein Pept. Lett.
, vol.16
, pp. 163-167
-
-
Nanni, L.1
Lumini, A.2
-
73
-
-
77954744707
-
Classification of transcription factors using protein primary structure
-
Yang, X. Y.; Shi, X. H.; Meng, X.; Li, X. L.; Lin, K.; Qian, Z. L.; Feng, K. Y.; Kong, X. Y.; Cai, Y. D. Classification of transcription factors using protein primary structure. Protein Pept. Lett., 2010, 17, 899-908.
-
(2010)
Protein Pept. Lett.
, vol.17
, pp. 899-908
-
-
Yang, X.Y.1
Shi, X.H.2
Meng, X.3
Li, X.L.4
Lin, K.5
Qian, Z.L.6
Feng, K.Y.7
Kong, X.Y.8
Cai, Y.D.9
-
74
-
-
68949112172
-
Prediction of small molecules' metabolic pathways based on functional group composition
-
Lu, J.; Niu, B.; Liu, L.; Lu, W. C.; Cai, Y. D. Prediction of small molecules' metabolic pathways based on functional group composition. Protein Pept. Lett., 2009, 16, 969-976.
-
(2009)
Protein Pept. Lett.
, vol.16
, pp. 969-976
-
-
Lu, J.1
Niu, B.2
Liu, L.3
Lu, W.C.4
Cai, Y.D.5
-
75
-
-
77649339280
-
Review: Recent advances in developing web-servers for predicting protein attributes
-
(Openly accessible at)
-
Chou, K. C.; Shen, H. B. Review: Recent advances in developing web-servers for predicting protein attributes. Nat. Sci., 2009, 2, 63-92 (Openly accessible at http://www.scirp.org/journal/NS/).
-
(2009)
Nat. Sci.
, vol.2
, pp. 63-92
-
-
Chou, K.C.1
Shen, H.B.2
-
76
-
-
70350448693
-
GPCR-GIA: A web-server for identifying G-protein coupled receptors and their families with grey incidence analysis
-
Lin, W. Z.; Xiao, X.; Chou, K. C. GPCR-GIA: A web-server for identifying G-protein coupled receptors and their families with grey incidence analysis. Protein Eng. Des. Sel., 2009, 22, 699-705.
-
(2009)
Protein Eng. Des. Sel.
, vol.22
, pp. 699-705
-
-
Lin, W.Z.1
Xiao, X.2
Chou, K.C.3
-
77
-
-
34447095147
-
MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
-
Chou, K. C.; Shen, H. B. MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochem. Biophys. Res. Commun., 2007, 360, 339-345.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.360
, pp. 339-345
-
-
Chou, K.C.1
Shen, H.B.2
-
78
-
-
7644239850
-
Using GO-PseAA predictor to predict enzyme sub-class
-
Chou, K. C.; Cai, Y. D. Using GO-PseAA predictor to predict enzyme sub-class. Biochem. Biophys. Res. Commun., 2004, 325, 506-509.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.325
, pp. 506-509
-
-
Chou, K.C.1
Cai, Y.D.2
-
79
-
-
7244251950
-
Predicting enzyme family class in a hybridization space
-
Chou, K. C.; Cai, Y. D. Predicting enzyme family class in a hybridization space. Protein Sci., 2004, 13, 2857-2863.
-
(2004)
Protein Sci.
, vol.13
, pp. 2857-2863
-
-
Chou, K.C.1
Cai, Y.D.2
-
80
-
-
32344433486
-
Predicting protein-protein interactions from sequences in a hybridization space
-
Chou, K. C.; Cai, Y. D. Predicting protein-protein interactions from sequences in a hybridization space. J. Proteome Res., 2006, 5, 316-322.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 316-322
-
-
Chou, K.C.1
Cai, Y.D.2
-
81
-
-
71549172792
-
Prediction of protein binding sites in protein structures using hiddenMarkov support vector machine
-
Liu, B.; Wang, X.; Lin, L.; Tang, B.; Dong, Q.; Wang, X. Prediction of protein binding sites in protein structures using hiddenMarkov support vector machine. BMC Bioinformatics, 2010, 10, 381.
-
(2010)
BMC Bioinformatics
, vol.10
, pp. 381
-
-
Liu, B.1
Wang, X.2
Lin, L.3
Tang, B.4
Dong, Q.5
Wang, X.6
-
82
-
-
33747135021
-
Novel knowledge-based mean force potential at the profile level
-
Dong, Q.; Wang, X.; Lin, L. Novel knowledge-based mean force potential at the profile level. BMC Bioinformatics., 2006, 7, 324.
-
(2006)
BMC Bioinformatics.
, vol.7
, pp. 324
-
-
Dong, Q.1
Wang, X.2
Lin, L.3
-
83
-
-
11844306688
-
Using GO-PseAA predictor to identify membrane proteins and their types
-
Chou, K. C.; Cai, Y. D. Using GO-PseAA predictor to identify membrane proteins and their types. Biochem. Biophys. Res. Commun., 2005, 327, 845-847.
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.327
, pp. 845-847
-
-
Chou, K.C.1
Cai, Y.D.2
-
84
-
-
3142779931
-
Prediction of protein subcellular locations by GO-FunD-PseAA predictor
-
Chou, K. C.; Cai, Y. D. Prediction of protein subcellular locations by GO-FunD-PseAA predictor. Biochem. Biophys. Res. Commun., 2004, 320, 1236-1239.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.320
, pp. 1236-1239
-
-
Chou, K.C.1
Cai, Y.D.2
-
85
-
-
33745759451
-
Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
-
Chou, K. C.; Shen, H. B. Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization. Biochem. Biophys. Res. Commun., 2006, 347, 150-157.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.347
, pp. 150-157
-
-
Chou, K.C.1
Shen, H.B.2
-
86
-
-
33847637338
-
Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
-
Shen, H. B.; Yang, J.; Chou, K. C. Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction. Amino Acids, 2007, 33, 57-67.
-
(2007)
Amino Acids
, vol.33
, pp. 57-67
-
-
Shen, H.B.1
Yang, J.2
Chou, K.C.3
-
87
-
-
34249318001
-
Euk-mPLoc: A fusion classifier for largescale eukaryotic protein subcellular location prediction by incorporating multiple sites
-
Chou, K. C.; Shen, H. B. Euk-mPLoc: A fusion classifier for largescale eukaryotic protein subcellular location prediction by incorporating multiple sites. J. Proteome Res., 2007, 6, 1728-1734.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 1728-1734
-
-
Chou, K.C.1
Shen, H.B.2
-
88
-
-
33846605183
-
Large-scale plant protein subcellular location prediction
-
Chou, K. C.; Shen, H. B. Large-scale plant protein subcellular location prediction. J. Cell. Biochem., 2007, 100, 665-678.
-
(2007)
J. Cell. Biochem.
, vol.100
, pp. 665-678
-
-
Chou, K.C.1
Shen, H.B.2
|