메뉴 건너뛰기




Volumn 16, Issue 8, 2009, Pages 969-976

Prediction of small molecules' metabolic pathways based on functional group composition

Author keywords

Adaboost; Independent set test; Jackknife cross validation test; Metabolism

Indexed keywords

ARTICLE; CHEMISTRY; METABOLISM; METABOLOMICS; METHODOLOGY; MOLECULAR LIBRARY;

EID: 68949112172     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/092986609788923374     Document Type: Article
Times cited : (30)

References (134)
  • 1
    • 5044229817 scopus 로고    scopus 로고
    • The challenges of modeling mammalian biocomplexity
    • DOI 10.1038/nbt1015
    • Nicholson J. K.; Holmes E.; Lindon J. C.; Wilson I. D.; The challenges of modeling mammalian biocomplexity. Nat. Biotechnol., 2004, 22, 1268-1274. (Pubitemid 39336780)
    • (2004) Nature Biotechnology , vol.22 , Issue.10 , pp. 1268-1274
    • Nicholson, J.K.1    Holmes, E.2    Lindon, J.C.3    Wilson, I.D.4
  • 2
    • 2942750460 scopus 로고    scopus 로고
    • Virtual screening for SARS-CoV protease based on KZ7088 pharmacophore points
    • Sirois S.; Wei D. Q.; Du Q. S.; Chou K. C.; Virtual screening for SARS-CoV protease based on KZ7088 pharmacophore points. J.; Chem. Inf. Model., 2004, 44, 1111-1122.
    • (2004) J. Chem. Inf. Model , vol.44 , pp. 1111-1122
    • Sirois, S.1    Wei, D.Q.2    Du, Q.S.3    Chou, K.C.4
  • 3
    • 47349088078 scopus 로고    scopus 로고
    • Review: Recent advances in QSAR and their applications in predicting the activities of chemical molecules, peptides and proteins for drug design
    • Du Q. S.; Huang R. B.; Chou K. C.; Review: Recent advances in QSAR and their applications in predicting the activities of chemical molecules, peptides and proteins for drug design. Curr. Protein Pept. Sci., 2008, 9, 248-259.
    • (2008) Curr. Protein Pept. Sci , vol.9 , pp. 248-259
    • Du, Q.S.1    Huang, R.B.2    Chou, K.C.3
  • 4
    • 49149091399 scopus 로고    scopus 로고
    • HP-Lattice QSAR for dynein proteins: Experimental proteomics 2D-electrophoresis, mass spectrometry and theoretic study of a Leishmania infantum sequence
    • Dea-Ayuela M. A.; Perez-Castillo Y.; Meneses-Marcel A.; Ubeira F. M.; Bolas-Fernandez F.; Chou K. C.; Gonzalez-Diaz H.; HP-Lattice QSAR for dynein proteins: Experimental proteomics 2D-electrophoresis, mass spectrometry and theoretic study of a Leishmania infantum sequence. Bioorg. Med. Chem., 2008, 16, 7770-7776.
    • (2008) Bioorg. Med. Chem , vol.16 , pp. 7770-7776
    • Dea-Ayuela, M.A.1    Perez-Castillo, Y.2    Meneses-Marcel, A.3    Ubeira, F.M.4    Bolas-Fernandez, F.5    Chou, K.C.6    Gonzalez-Diaz, H.7
  • 5
    • 3242792729 scopus 로고    scopus 로고
    • Review: Structural bioinformatics and its impact to biomedical science
    • Chou K. C.; Review: Structural bioinformatics and its impact to biomedical science. Curr. Med. Chem., 2004, 11, 2105-2134.
    • (2004) Curr. Med. Chem , vol.11 , pp. 2105-2134
    • Chou, K.C.1
  • 6
    • 0041848237 scopus 로고    scopus 로고
    • Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS. Erratum: Ibid. Vol 310 675
    • Chou K. C.; Wei D. Q.; Zhong W. Z.; Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS. Erratum: ibid., 2003, Vol. 310, 675 Biochem. Biophys. Res. Commun., 2003, 308, 148-151.
    • (2003) Biochem. Biophys, Res. Commun , vol.308 , pp. 148-151
    • Chou, K.C.1    Wei, D.Q.2    Zhong, W.Z.3
  • 7
    • 0026599046 scopus 로고
    • Energy-optimized structure of antifreeze protein and its binding mechanism
    • Chou K. C.; Energy-optimized structure of antifreeze protein and its binding mechanism. J.; Mol. Biol., 1992, 223, 509-517.
    • (1992) J. Mol. Biol , vol.223 , pp. 509-517
    • Chou, K.C.1
  • 8
    • 0019885786 scopus 로고
    • Two new schematic rules for rate laws of enzymecatalyzed reactions
    • Chou K. C.; Two new schematic rules for rate laws of enzymecatalyzed reactions. J.; Theor. Biol., 1198, 89, 581-592.
    • (1198) J. Theor. Biol , vol.89 , pp. 581-592
    • Chou, K.C.1
  • 9
    • 0021764092 scopus 로고
    • An extension of Chou's graphical rules for deriving enzyme kinetic equations to system involving parallel reaction pathways
    • Zhou G. P.; Deng M. H.; An extension of Chou's graphical rules for deriving enzyme kinetic equations to system involving parallel reaction pathways. Biochem. J., 1498, 222, 169-176.
    • (1498) Biochem. J , vol.222 , pp. 169-176
    • Zhou, G.P.1    Deng, M.H.2
  • 10
    • 0021800102 scopus 로고
    • Microcomputer tools for steady-state enzyme kinetics
    • Myers D.; Palmer G.; Microcomputer tools for steady-state enzyme kinetics. Bioinformatics, 1985, 1, 105-110.
    • (1598) Bioinformatics , vol.1 , pp. 105-110
    • Myers, D.1    Palmer, G.2
  • 11
    • 0024971003 scopus 로고
    • Graphical rules in steady and non-steady enzyme kinetics
    • Chou K. C.; Graphical rules in steady and non-steady enzyme kinetics. J. Biol. Chem., 1989, 264, 12074-12079.
    • (1899) J. Biol. Chem , vol.264 , pp. 12074-12079
    • Chou, K.C.1
  • 12
    • 0025021607 scopus 로고
    • Review: Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems
    • Chou K. C.; Review: Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems. Biophys. Chem., 1990, 35, 1-24.
    • (1990) Biophys. Chem , vol.35 , pp. 1-24
    • Chou, K.C.1
  • 13
    • 0028071544 scopus 로고
    • Review: Steady-state inhibition kinetics of processive nucleic acid polymerases and nucleases
    • Chou K. C.; Kezdy F. J.; Reusser F.; Review: Steady-state inhibition kinetics of processive nucleic acid polymerases and nucleases. Anal. Biochem., 1994, 221, 217-230.
    • (1994) Anal. Biochem , vol.221 , pp. 217-230
    • Chou, K.C.1    Kezdy, F.J.2    Reusser, F.3
  • 14
    • 42149097173 scopus 로고    scopus 로고
    • Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws: New methods based on directed graphs
    • Andraos J.; Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws: new methods based on directed graphs. Can. J.; Chem., 2008, 86, 342-357.
    • (2008) Can. J. Chem. , vol.86 , pp. 342-357
    • Andraos, J.1
  • 15
    • 0024005728 scopus 로고    scopus 로고
    • Review: Low-frequency collective motion in biomacromolecules and its biological functions
    • Chou K. C.; Review: Low-frequency collective motion in biomacromolecules and its biological functions. Biophys. Chem., 1998, 30, 3-48.
    • (1998) Biophys. Chem , vol.30 , pp. 3-48
    • Chou, K.C.1
  • 16
    • 67650029561 scopus 로고    scopus 로고
    • Extrinsic electromagnetic fields, low frequency phonon vibrations, and control of cell function: A non-linear resonance system
    • Gordon G.; Extrinsic electromagnetic fields, low frequency phonon vibrations, and control of cell function: a non-linear resonance system. J. Biomed. Sci. Eng., 2008, 1, 152-156.
    • (2008) J. Biomed. Sci. Eng , vol.1 , pp. 152-156
    • Gordon, G.1
  • 17
    • 39449105071 scopus 로고    scopus 로고
    • Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms
    • Chou K.-C. Shen H.-B. Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms. Nat. Protoc., 2008, 3, 153-162.
    • (2008) Nat. Protoc , vol.3 , pp. 153-162
    • Chou, K.-C.1    Shen, H.-B.2
  • 18
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • DOI 10.1016/j.ab.2007.07.006, PII S0003269707004423
    • Chou K. C.; Shen H. B.; Review: Recent progress in protein subcellular location prediction. Anal. Biochem., 2007, 370, 1-16. (Pubitemid 47404494)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.-C.1    Shen, H.-B.2
  • 19
    • 53149132374 scopus 로고    scopus 로고
    • ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information
    • Chou K. C.; Shen H. B.; ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochem. Biophys. Res. Commun., 2008, 376, 321-325.
    • (2008) Biochem. Biophys. Res. Commun , vol.376 , pp. 321-325
    • Chou, K.C.1    Shen, H.B.2
  • 20
    • 0027219970 scopus 로고
    • A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins
    • Chou K. C. A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins. J. Biol. Chem., 1993, 268, 16938-16948. (Pubitemid 23236917)
    • (1993) Journal of Biological Chemistry , vol.268 , Issue.23 , pp. 16938-16948
    • Chou, K.-C.1
  • 21
    • 0030049315 scopus 로고    scopus 로고
    • Prediction of human immunodeficiency virus protease cleavage sites in proteins
    • DOI 10.1006/abio.1996.0001
    • Chou K.-C. Prediction of Human Immunodeficiency Virus Protease Cleavage Sites in Proteins. Anal. Biochem., 1996, 233, 1-14. (Pubitemid 26036360)
    • (1996) Analytical Biochemistry , vol.233 , Issue.1 , pp. 1-14
    • Chou, K.-C.1
  • 22
    • 34247544233 scopus 로고    scopus 로고
    • Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
    • DOI 10.1016/j.bbrc.2007.03.162, PII S0006291X0700664X
    • Chou K. C.; Shen H. B.; Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides. Biochem. Biophys. Res. Commun., 2007, 357, 633-640. (Pubitemid 46653826)
    • (2007) Biochemical and Biophysical Research Communications , vol.357 , Issue.3 , pp. 633-640
    • Chou, K.-C.1    Shen, H.-B.2
  • 23
    • 34748902270 scopus 로고    scopus 로고
    • Signal-3L: A 3-layer approach for predicting signal peptide Biochem
    • Shen H. B.; Chou K. C.; Signal-3L: a 3-layer approach for predicting signal peptide Biochem. Biophys. Res. Commun., 2007, 363, 297-303.
    • (2007) Biophys. Res. Commun , vol.363 , pp. 297-303
    • Shen, H.B.1    Chou, K.C.2
  • 24
    • 0042508742 scopus 로고    scopus 로고
    • Metabolic engineering-a genetic toolbox for small molecule organic synthesis
    • Burkart M. D.; Metabolic engineering-a genetic toolbox for small molecule organic synthesis. Org. Biomol. Chem., 2003, 1, 1-4.
    • (2003) Org. Biomol. Chem , vol.1 , pp. 1-4
    • Burkart, M.D.1
  • 25
    • 0029135393 scopus 로고
    • Toxicity prediction from metabolic pathway modeling
    • Jackson R. C.; Toxicity prediction from metabolic pathway modeling. Toxicology, 1995, 102, 197-205.
    • (1995) Toxicology , vol.102 , pp. 197-205
    • Jackson, R.C.1
  • 26
    • 0034607368 scopus 로고    scopus 로고
    • Analysis and prediction of the effect of uncertain boundary values in modeling a metabolic pathway
    • DOI 10.1002/(SICI)1097-0290(20000405)68:1<18::AID-BIT3>3.0.CO;2-5
    • De Atauri P.; Sorribas A.; Cascante M.; Analysis and prediction of the effect of uncertain boundary values in modeling a metabolic pathway. Biotechnol. Bioeng., 2000, 68, 18-30. (Pubitemid 30163489)
    • (2000) Biotechnology and Bioengineering , vol.68 , Issue.1 , pp. 18-30
    • De Atauri, P.1    Sorribas, A.2    Cascante, M.3
  • 27
    • 27644588079 scopus 로고    scopus 로고
    • Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis
    • Anishetty S.; Pulimi M.; Pennathur G.; Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis. Comput. Biol. Chem., 2005, 29, 368-378.
    • (2005) Comput. Biol. Chem , vol.29 , pp. 368-378
    • Anishetty, S.1    Pulimi, M.2    Pennathur, G.3
  • 28
    • 33747829918 scopus 로고    scopus 로고
    • The Path-A metabolic pathway prediction web server
    • DOI 10.1093/nar/gkl228
    • Pireddu L.; Szafron D.; Lu P.; Greiner R.; The Path-A metabolic pathway prediction web server. Nucleic Acids Res., 2006, 34, W714-W719. (Pubitemid 44529864)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Pireddu, L.1    Szafron, D.2    Lu, P.3    Greiner, R.4
  • 29
    • 33644627879 scopus 로고    scopus 로고
    • Computational prediction of impact of rerouting the carbon flux in metabolic pathway on cell growth and nisin production by Lactococcus lactis
    • DOI 10.1016/j.bej.2005.10.003, PII S1369703X0500344X
    • Wardani A. K.; Egawa S.; Nagahisa K.; Shimizu H.; Shioya S.; Computational prediction of impact of rerouting the carbon flux in metabolic pathway on cell growth and nisin production by Lactococcus lactis. Biochem. Eng. J., 2006, 28, 220-230. (Pubitemid 43319308)
    • (2006) Biochemical Engineering Journal , vol.28 , Issue.3 , pp. 220-230
    • Wardani, A.K.1    Egawa, S.2    Nagahisa, K.3    Shimizu, H.4    Shioya, S.5
  • 30
    • 55949102650 scopus 로고    scopus 로고
    • Use of metabolic pathway flux information in anticancer drug design. Ernst
    • Boros L. G.; Boros T. F.; Use of metabolic pathway flux information in anticancer drug design. Ernst. Schering. Found. Symp. Proc., 2007, 189-203.
    • (2007) Schering. Found. Symp. Proc , pp. 189-203
    • Boros, L.G.1    Boros, T.F.2
  • 31
    • 34247374704 scopus 로고    scopus 로고
    • Prediction of missing enzyme genes in a bacterial metabolic network: Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa
    • DOI 10.1111/j.1742-4658.2007.05763.x
    • Yamanishi Y.; Mihara H.; Osaki M.; Muramatsu H.; Esaki N.; Sato T.; Hizukuri Y.; Goto S.; Kanehisa M.; Prediction of missing enzyme genes in a bacterial metabolic network - Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa. FEBS. J., 2007, 274, 2262-2273. (Pubitemid 46633455)
    • (2007) FEBS Journal , vol.274 , Issue.9 , pp. 2262-2273
    • Yamanishi, Y.1    Mihara, H.2    Osaki, M.3    Muramatsu, H.4    Esaki, N.5    Sato, T.6    Hizukuri, Y.7    Goto, S.8    Kanehisa, M.9
  • 32
    • 51949118437 scopus 로고    scopus 로고
    • Antipsychotic drug mechanisms: Links between therapeutic effects, metabolic side effects and the insulin signaling pathway
    • Girgis R. R.; Javitch J. A.; Lieberman J. A.; Antipsychotic drug mechanisms: links between therapeutic effects, metabolic side effects and the insulin signaling pathway. Mol. Psychiatry, 2008, 13, 918-929.
    • (2008) Mol. Psychiatry , vol.13 , pp. 918-929
    • Girgis, R.R.1    Javitch, J.A.2    Lieberman, J.A.3
  • 33
    • 44949083487 scopus 로고    scopus 로고
    • Experimental validation of metabolic pathway modeling: An illustration with glycolytic segments from Entamoeba histolytica
    • DOI 10.1111/j.1742-4658.2008.06492.x
    • Moreno-Sanchez R.; Encalada R.; Marin-Hernandez A.; Saavedra E.; Experimental validation of metabolic pathway modeling - An illustration with glycolytic segments from Entamoeba histolytica. FEBS. J., 2008, 275, 3454-3469. (Pubitemid 351813555)
    • (2008) FEBS Journal , vol.275 , Issue.13 , pp. 3454-3469
    • Moreno-Sanchez, R.1    Encalada, R.2    Marin-Hernandez, A.3    Saavedra, E.4
  • 34
    • 33846638290 scopus 로고    scopus 로고
    • Predicting networking couples for metabolic pathways of Arabidopsis
    • Chou K. C.; Cai Y.D.; Zhong W. Z.; Predicting networking couples for metabolic pathways of Arabidopsis. EXCLI J.; Adv. Sci., 2006, 5, 55-65.
    • (2006) EXCLI J. Adv. Sci , vol.5 , pp. 55-65
    • Chou, K.C.1    Cai, Y.D.2    Zhong, W.Z.3
  • 35
    • 67651164110 scopus 로고    scopus 로고
    • Correlation of metabolic pathways with the primary structure in acetylated proteins
    • Yang Z. R.; Chou K. C.; Correlation of metabolic pathways with the primary structure in acetylated proteins. Open Bioinform. J., 2008, 2, 90-96.
    • (2008) Open Bioinform. J , vol.2 , pp. 90-96
    • Yang, Z.R.1    Chou, K.C.2
  • 36
    • 68349160183 scopus 로고    scopus 로고
    • Metabolic pathway modeling by using the nearest neighbor algorithm
    • Cai Y.D.; Muldoon M.; Metabolic pathway modeling by using the nearest neighbor algorithm. MIMS EPrint, 2007, 110, 1-21.
    • (2007) MIMS EPrint , vol.110 , pp. 1-21
    • Cai, Y.D.1    Muldoon, M.2
  • 37
    • 0033281701 scopus 로고    scopus 로고
    • Improved boosting algorithms using confidence-rated predictions
    • DOI 10.1023/A:1007614523901
    • Schapire R. E.; Singer Y.; Improved boosting algorithms using confidence-rated predictions. Mach. Learn., 1999, 37, 297-336. (Pubitemid 32210620)
    • (1999) Machine Learning , vol.37 , Issue.3 , pp. 297-336
    • Schapire, R.E.1    Singer, Y.2
  • 39
    • 22144487766 scopus 로고    scopus 로고
    • Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types
    • DOI 10.1016/j.bbrc.2005.06.087, PII S0006291X0501301X
    • Shen H. B.; Chou K. C.; Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types. Biochem. Biophys. Res. Commun., 2005, 334, 288-292. (Pubitemid 40978537)
    • (2005) Biochemical and Biophysical Research Communications , vol.334 , Issue.1 , pp. 288-292
    • Shen, H.1    Chou, K.-C.2
  • 40
    • 57749188687 scopus 로고    scopus 로고
    • Identification of proteases and their types
    • Shen H. B.; Chou K. C.; Identification of proteases and their types. Anal. Biochem., 2009, 385, 153-160.
    • (2009) Anal. Biochem , vol.385 , pp. 153-160
    • Shen, H.B.1    Chou, K.C.2
  • 41
    • 29244482784 scopus 로고    scopus 로고
    • Predicting membrane protein type by functional domain composition and pseudo-amino acid composition
    • DOI 10.1016/j.jtbi.2005.05.035, PII S0022519305002547
    • Cai Y.D.; Chou K. C.; Predicting membrane protein type by functional domain composition and pseudo-amino acid composition. J.; Theor. Biol., 2006, 238, 395-400. (Pubitemid 41828439)
    • (2006) Journal of Theoretical Biology , vol.238 , Issue.2 , pp. 395-400
    • Cai, Y.-D.1    Chou, K.-C.2
  • 42
    • 8444248846 scopus 로고    scopus 로고
    • Weighted-support vector machines for predicting membrane protein types based on pseudo-amino acid composition
    • DOI 10.1093/protein/gzh061
    • Wang M.; Yang J.; Liu G. P.; Xu Z. J.; Chou K. C.; Weightedsupport vector machines for predicting membrane protein types based on pseudo-amino acid composition. Protein Eng. Des. Sel., 2004, 17, 509-516. (Pubitemid 39487530)
    • (2004) Protein Engineering, Design and Selection , vol.17 , Issue.6 , pp. 509-516
    • Wang, M.1    Yang, J.2    Liu, G.-P.3    Xu, Z.-J.4    Chou, K.-C.5
  • 44
    • 0038636605 scopus 로고    scopus 로고
    • Support vector machines for predicting membrane protein types by using functional domain composition
    • Cai Y.D.; Zhou G. P.; Chou K. C.; Support vector machines for predicting membrane protein types by using functional domain composition. Biophys. J., 2003, 84, 3257-3263.
    • (2003) Biophys. J , vol.84 , pp. 3257-3263
    • Cai, Y.D.1    Zhou, G.P.2    Chou, K.C.3
  • 45
    • 0842326624 scopus 로고    scopus 로고
    • Application of SVM to predict membrane protein types
    • Cai Y.D.; Ricardo P. W.; Jen C. H.; Chou K. C.; Application of SVM to predict membrane protein types. J.; Theor. Biol., 2004, 226, 373-376.
    • (2004) J. Theor. Biol , vol.226 , pp. 373-376
    • Cai, Y.D.1    Ricardo, P.W.2    Jen, C.H.3    Chou, K.C.4
  • 46
    • 18344391868 scopus 로고    scopus 로고
    • Prediction of membrane protein types by incorporating amphipathic effects
    • Chou K. C.; Cai Y.D.; Prediction of membrane protein types by incorporating amphipathic effects. J.; Chem. Inf. Model., 2005, 45, 407-413.
    • (2005) J. Chem. Inf. Model , vol.45 , pp. 407-413
    • Chou, K.C.1    Cai, Y.D.2
  • 47
    • 0032910566 scopus 로고    scopus 로고
    • Prediction of membrane protein types and subcellular locations
    • DOI 10.1002/(SICI)1097-0134(19990101)34:1<137::AID-PROT11>3.0.CO;2- O
    • Chou K. C.; Elrod D. W.; Prediction of membrane protein types and subcellular locations. Proteins, 1999, 34, 137-153. (Pubitemid 29019537)
    • (1999) Proteins: Structure, Function and Genetics , vol.34 , Issue.1 , pp. 137-153
    • Chou, K.-C.1    Elrod, D.W.2
  • 48
    • 0002975203 scopus 로고
    • On the generalized distance in statistics
    • Mahalanobis P. C.; On the generalized distance in statistics. Proc. R.; Inst. India, 1936, 2, 49-55.
    • (1936) Proc. R. Inst. India , vol.2 , pp. 49-55
    • Mahalanobis, P.C.1
  • 49
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a 20-1-D amino acid composition space
    • Chou K. C. A novel approach to predicting protein structural classes in a 20-1-D amino acid composition space. Proteins, 1995, 21, 319-344.
    • (1995) Proteins , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 50
    • 34247218437 scopus 로고    scopus 로고
    • Prediction of subcellular protein localization based on functional domain composition
    • DOI 10.1016/j.bbrc.2007.03.139, PII S0006291X07006067
    • Jia P.; Qian Z.; Zeng Z.; Zeng Z. B.; Cai Y.D.; Li Y. X.; Prediction of subcellular protein localization based on functional domain composition. Biochem. Biophys. Res. Commun., 2007, 357, 366-370. (Pubitemid 46604876)
    • (2007) Biochemical and Biophysical Research Communications , vol.357 , Issue.2 , pp. 366-370
    • Jia, P.1    Qian, Z.2    Zeng, Z.3    Cai, Y.4    Li, Y.5
  • 51
    • 68949099041 scopus 로고    scopus 로고
    • Prediction of cellular location of proteins
    • Chou K. C.; Elrod D. W.; Prediction of cellular location of proteins. Abstr. Pap. Am. Chem. Soc., 1998, 216, U208-U208.
    • (1998) Abstr. Pap. Am. Chem. Soc , vol.216
    • Chou, K.C.1    Elrod, D.W.2
  • 52
    • 0038705861 scopus 로고    scopus 로고
    • Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition
    • Cai Y.D.; Chou K. C.; Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition. Biochem. Biophys. Res. Commun., 2003, 305, 407-411.
    • (2003) Biochem. Biophys. Res. Commun , vol.305 , pp. 407-411
    • Cai, Y.D.1    Chou, K.C.2
  • 53
    • 0032501152 scopus 로고    scopus 로고
    • Using discriminant function for prediction of subcellular location of prokaryotic proteins
    • DOI 10.1006/bbrc.1998.9498
    • Chou K. C.; Elrod D. W.; Using discriminant function for prediction of subcellular location of prokaryotic proteins. Biochem. Biophys. Res. Commun., 1998, 252, 63-68. (Pubitemid 28534628)
    • (1998) Biochemical and Biophysical Research Communications , vol.252 , Issue.1 , pp. 63-68
    • Chou, K.-C.1    Elrod, D.W.2
  • 54
    • 0032940342 scopus 로고    scopus 로고
    • Protein subcellular location prediction
    • Chou K. C.; Elrod D. W.; Protein subcellular location prediction. Protein Eng., 1999, 12, 107-118.
    • (1999) Protein Eng , vol.12 , pp. 107-118
    • Chou, K.C.1    Elrod, D.W.2
  • 55
    • 0034687538 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations by incorporating quasi-sequence-order effect
    • Chou K. C.; Prediction of protein subcellular locations by incorporating quasi-sequence-order effect. Biochem. Biophys. Res. Commun., 2000, 278, 477-483.
    • (2000) Biochem. Biophys. Res. Commun , vol.278 , pp. 477-483
    • Chou, K.C.1
  • 56
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudoamino acid composition
    • Chou K. C.; Prediction of protein cellular attributes using pseudoamino acid composition. Proteins, 2001, 43, 246-255.
    • (2001) Proteins , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 57
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudoamino acid composition
    • Chou K. C.; Prediction of protein cellular attributes using pseudoamino acid composition. Proteins, 2001, 43, 246-255.
    • (2001) Proteins , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 58
    • 0036006486 scopus 로고    scopus 로고
    • Artificial neural network model for predicting protein subcellular location
    • Cai Y.D.; Liu X. J.; Chou K. C.; Artificial neural network model for predicting protein subcellular location. Comput. Chemist., 2002, 26, 179-182.
    • (2002) Comput. Chemist , vol.26 , pp. 179-182
    • Cai, Y.D.1    Liu, X.J.2    Chou, K.C.3
  • 59
    • 0035672036 scopus 로고    scopus 로고
    • Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect
    • Cai Y.D.; Liu X. J.; Xu X. B.; Chou K. C.; Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect. J.; Cell Biochem., 2002, 84, 343-348.
    • (2002) J. Cell Biochem , vol.84 , pp. 343-348
    • Cai, Y.D.1    Liu, X.J.2    Xu, X.B.3    Chou, K.C.4
  • 60
    • 0345305854 scopus 로고    scopus 로고
    • Prediction and Classification of Protein Subcellular Location - Sequence-Order Effect and Pseudo Amino Acid Composition
    • DOI 10.1002/jcb.10719
    • Chou K. C.; Cai Y.D.; Prediction and classification of protein subcellular location - Sequence-order effect and pseudo amino acid composition. J.; Cell Biochem., 2003, 90, 1250-1260. (Pubitemid 37485059)
    • (2003) Journal of Cellular Biochemistry , vol.90 , Issue.6 , pp. 1250-1260
    • Chou, K.-C.1    Cai, Y.-D.2
  • 61
  • 62
    • 2442671554 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins in a hybridization space
    • DOI 10.1093/bioinformatics/bth054
    • Cai Y.D.; Chou K. C.; Predicting subcellular localization of proteins in a hybridization space. Bioinformatics, 2004, 20, 1151-1156. (Pubitemid 38660352)
    • (2004) Bioinformatics , vol.20 , Issue.7 , pp. 1151-1156
    • Cai, Y.-D.1    Chou, K.-C.2
  • 63
    • 3142779931 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations by GO-FunD-PseAA predictor
    • DOI 10.1016/j.bbrc.2004.06.073, PII S0006291X04013518
    • Chou K. C.; Cai Y. D.; Prediction of protein subcellular locations by GO-FunD-PseAA predictor. Biochem. Biophys. Res. Commun., 2004, 320, 1236-1239. (Pubitemid 38916676)
    • (2004) Biochemical and Biophysical Research Communications , vol.320 , Issue.4 , pp. 1236-1239
    • Chou, K.-C.1    Cai, Y.-D.2
  • 64
    • 7444264582 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudoamino acid composition
    • Chou K. C.; Cai Y. D.; Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudoamino acid composition. J.; Cell Biochem., 2004, 91, 1197-1203.
    • (2004) J. Cell Biochem , vol.91 , pp. 1197-1203
    • Chou, K.C.1    Cai, Y.D.2
  • 65
    • 21244494076 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter
    • DOI 10.1007/s00726-005-0206-9
    • Gao Y.; Shao S.; Xiao X.; Ding Y.; Huang Y.; Huang Z.; Chou K. C.; Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter. Amino Acids, 2005, 28, 373-376. (Pubitemid 40884727)
    • (2005) Amino Acids , vol.28 , Issue.4 , pp. 373-376
    • Gao, Y.1    Shao, S.2    Xiao, X.3    Ding, Y.4    Huang, Y.5    Huang, Z.6    Chou, K.-C.7
  • 66
    • 33745759451 scopus 로고    scopus 로고
    • Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
    • Chou K. C.; Shen H. B.; Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization. vol 347, pg 150, 2006 Biochem. Biophys. Res. Commun., 2006, 348, 1479-1479.
    • (2006) Biochem. Biophys. Res. Commun. , vol.347 , pp. 1479-1479
    • Chou, K.C.1    Shen, H.B.2
  • 67
    • 33745759451 scopus 로고    scopus 로고
    • Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization Biochem
    • Chou K. C.; Shen H. B.; Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization Biochem. Biophys. Res. Commun., 2006, 347, 150-157.
    • (2006) Biophys. Res. Commun , vol.347 , pp. 150-157
    • Chou, K.C.1    Shen, H.B.2
  • 68
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • DOI 10.1016/j.ab.2007.07.006, PII S0003269707004423
    • Chou K. C.; Shen H. B.; Recent progress in protein subcellular location prediction. Anal. Biochem., 2007, 370, 1-16. (Pubitemid 47404494)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.-C.1    Shen, H.-B.2
  • 69
    • 34247218437 scopus 로고    scopus 로고
    • Prediction of subcellular protein localization based on functional domain composition
    • DOI 10.1016/j.bbrc.2007.03.139, PII S0006291X07006067
    • Jia P. L.; Qian Z. L.; Zeng Z. B.; Cai Y. D.; Li Y. X.; Prediction of subcellular protein localization based on functional domain composition. Biochem. Biophys. Res. Commun., 2007, 357, 366-370. (Pubitemid 46604876)
    • (2007) Biochemical and Biophysical Research Communications , vol.357 , Issue.2 , pp. 366-370
    • Jia, P.1    Qian, Z.2    Zeng, Z.3    Cai, Y.4    Li, Y.5
  • 70
    • 34447321808 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM
    • DOI 10.1016/j.patrec.2007.04.001, PII S0167865507001158
    • Mundra P.; Kumar M.; Kumar K. K.; Jayaraman V. K.; Kulkarni B. D.; Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM. Pattern Recognit. Lett., 2007, 28, 1610-1615. (Pubitemid 47058614)
    • (2007) Pattern Recognition Letters , vol.28 , Issue.13 , pp. 1610-1615
    • Mundra, P.1    Kumar, M.2    Kumar, K.K.3    Jayaraman, V.K.4    Kulkarni, B.D.5
  • 71
    • 33847668306 scopus 로고    scopus 로고
    • Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    • DOI 10.1016/j.bbrc.2007.02.071, PII S0006291X07003452
    • Shen H. B.; Chou K. C.; Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites. Biochem. Biophys. Res. Commun., 2007, 355, 1006-1011. (Pubitemid 46366927)
    • (2007) Biochemical and Biophysical Research Communications , vol.355 , Issue.4 , pp. 1006-1011
    • Shen, H.-B.1    Chou, K.-C.2
  • 72
    • 33847080827 scopus 로고    scopus 로고
    • Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
    • DOI 10.1093/protein/gzl053
    • Shen H. B.; Chou, K. C.; Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. Protein Eng. Des. Sel., 2007, 20, 39-46. (Pubitemid 46269434)
    • (2007) Protein Engineering, Design and Selection , vol.20 , Issue.1 , pp. 39-46
    • Shen, H.-B.1    Chou, K.-C.2
  • 73
    • 33847260136 scopus 로고    scopus 로고
    • Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    • Shen H. B.; Chou K. C.; Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells. Biopolymers, 2007, 85, 233-240.
    • (2007) Biopolymers , vol.85 , pp. 233-240
    • Shen, H.B.1    Chou, K.C.2
  • 74
    • 34548357153 scopus 로고    scopus 로고
    • Methodology development for predicting subcellular localization and other attributes of proteins
    • DOI 10.1586/14789450.4.4.453
    • Shen H. B.; Yang J.; Chou K. C.; Methodology development for predicting subcellular localization and other attributes of proteins. Expert. Rev. Proteomics, 2007, 4, 453-463. (Pubitemid 47347594)
    • (2007) Expert Review of Proteomics , vol.4 , Issue.4 , pp. 453-463
    • Shen, H.-B.1    Yang, J.2    Chou, K.-C.3
  • 75
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • Chou K. C.; Cai Y. D.; Using functional domain composition and support vector machines for prediction of protein subcellular location. J. Biol. Chem., 2002, 277, 45765-45769.
    • (2002) J. Biol. Chem , vol.277 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 76
    • 45649085013 scopus 로고    scopus 로고
    • Predicting protein structural class based on multi-features fusion
    • Chen C.; Chen L. X.; Zou X. Y.; Cai P. X.; Predicting protein structural class based on multi-features fusion. J.; Theor. Biol., 2008, 253, 388-392.
    • (2008) J. Theor. Biol , vol.253 , pp. 388-392
    • Chen, C.1    Chen, L.X.2    Zou, X.Y.3    Cai, P.X.4
  • 79
    • 20844436424 scopus 로고    scopus 로고
    • Predicting enzyme subclass by functional domain composition and pseudo amino acid composition
    • Cai Y. D.; Chou K. C.; Predicting enzyme subclass by functional domain composition and pseudo amino acid composition. J.; Proteome. Res., 2005, 4, 967-971.
    • (2005) J. Proteome. Res , vol.4 , pp. 967-971
    • Cai, Y.D.1    Chou, K.C.2
  • 80
    • 3042621436 scopus 로고    scopus 로고
    • Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition
    • DOI 10.1093/bioinformatics/bth085
    • Cai Y. D.; Doig, A. J.; Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition. Bioinformatics, 2004, 20, 1292-1300. (Pubitemid 38811420)
    • (2004) Bioinformatics , vol.20 , Issue.8 , pp. 1292-1300
    • Cai, Y.-D.1    Doig, A.J.2
  • 81
    • 24344500472 scopus 로고    scopus 로고
    • Generalization bounds for averaged classifiers
    • DOI 10.1214/009053604000000058
    • Freund Y.; Mansour Y.; Schapire R. E.; Generalization bounds for averaged classifiers. Ann. Stat., 2004, 32, 1698-1722. (Pubitemid 41250282)
    • (2004) Annals of Statistics , vol.32 , Issue.4 , pp. 1698-1722
    • Freund, Y.1    Mansour, Y.2    Schapire, R.E.3
  • 82
  • 83
    • 0031211090 scopus 로고    scopus 로고
    • A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting
    • Freund Y.; Schapire R. E. A decision-theoretic generalization of on-line learning and an application to boosting. J.; Comput. Sys. Sci., 1997, 55, 119-139. (Pubitemid 127433398)
    • (1997) Journal of Computer and System Sciences , vol.55 , Issue.1 , pp. 119-139
    • Freund, Y.1    Schapire, R.E.2
  • 84
    • 0033281425 scopus 로고    scopus 로고
    • Large margin classification using the perceptron algorithm
    • DOI 10.1023/A:1007662407062
    • Freund Y.; Schapire R. E.; Large margin classification using the perceptron algorithm. Mach. Learn., 1999, 37, 277-296. (Pubitemid 32210619)
    • (1999) Machine Learning , vol.37 , Issue.3 , pp. 277-296
    • Freund, Y.1    Schapire, R.E.2
  • 85
    • 26844494532 scopus 로고    scopus 로고
    • Additive logistic regression: A statistical view of boosting-Discussion
    • Freund Y.; Schapire R. E.; Additive logistic regression: A statistical view of boosting - Discussion. Ann. Stat., 2000, 28, 391-393.
    • (2000) Ann. Stat , vol.28 , pp. 391-393
    • Freund, Y.1    Schapire, R.E.2
  • 86
    • 0032280519 scopus 로고    scopus 로고
    • Boosting the margin: A new explanation for the effectiveness of voting methods
    • Schapire R. E.; Freund Y.; Bartlett P.; Lee W. S.; Boosting the margin: A new explanation for the effectiveness of voting methods. Ann. Stat., 1998, 26, 1651-1686. (Pubitemid 128376902)
    • (1998) Annals of Statistics , vol.26 , Issue.5 , pp. 1651-1686
    • Schapire, R.E.1    Freund, Y.2    Bartlett, P.3    Lee, W.S.4
  • 87
    • 46049083380 scopus 로고    scopus 로고
    • Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins
    • Niu B.; Jin Y. H.; Feng K. Y.; Lu W. C.; Cai Y. D.; Li G. Z.; Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins. Mol. Divers., 2008, 12, 41-45.
    • (2008) Mol. Divers , vol.12 , pp. 41-45
    • Niu, B.1    Jin, Y.H.2    Feng, K.Y.3    Lu, W.C.4    Cai, Y.D.5    Li, G.Z.6
  • 88
    • 33646393287 scopus 로고    scopus 로고
    • Predicting protein structural class with AdaBoost learner
    • Niu B.; Cai Y. D.; Lu W. C.; Li G. Z.; Chou K. C.; Predicting protein structural class with AdaBoost learner. Protein Pept. Lett., 2006, 13, 489-492.
    • (2006) Protein Pept. Lett. , vol.13 , pp. 489-492
    • Niu, B.1    Cai, Y.D.2    Lu, W.C.3    Li, G.Z.4    Chou, K.C.5
  • 89
    • 28444439947 scopus 로고    scopus 로고
    • Using LogitBoost classifier to predict protein structural classes
    • DOI 10.1016/j.jtbi.2005.05.034, PII S0022519305002523
    • Cai Y. D.; Feng K. Y.; Lu W. C.; Chou K. C.; Using LogitBoost classifier to predict protein structural classes. J.; Theor. Biol., 2006, 238, 172-176. (Pubitemid 41737806)
    • (2006) Journal of Theoretical Biology , vol.238 , Issue.1 , pp. 172-176
    • Cai, Y.-D.1    Feng, K.-Y.2    Lu, W.-C.3    Chou, K.-C.4
  • 90
    • 33750475941 scopus 로고    scopus 로고
    • Using pseudo-amino acid composition and support vector machine to predict protein structural class
    • DOI 10.1016/j.jtbi.2006.06.025, PII S0022519306002748
    • Chen C.; Tian Y. X.; Zou X. Y.; Cai P. X.; Mo J. Y.; Using pseudo-amino acid composition and support vector machine to predict protein structural class. J.; Theor. Biol., 2006, 243, 444-448. (Pubitemid 44647324)
    • (2006) Journal of Theoretical Biology , vol.243 , Issue.3 , pp. 444-448
    • Chen, C.1    Tian, Y.-X.2    Zou, X.-Y.3    Cai, P.-X.4    Mo, J.-Y.5
  • 91
    • 33748287103 scopus 로고    scopus 로고
    • Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network
    • DOI 10.1016/j.ab.2006.07.022, PII S0003269706005318
    • Chen C.; Zhou X. B.; Tian Y. X.; Zou X. Y.; Cai P. X.; Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network. Anal. Biochem., 2006, 357, 116-121. (Pubitemid 44331169)
    • (2006) Analytical Biochemistry , vol.357 , Issue.1 , pp. 116-121
    • Chen, C.1    Zhou, X.2    Tian, Y.3    Zou, X.4    Cai, P.5
  • 92
    • 34548301416 scopus 로고    scopus 로고
    • Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
    • DOI 10.1007/s00726-006-0485-9
    • Chen J.; Liu H.; Yang J.; Chou K. C.; Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids, 2007, 33, 423-428. (Pubitemid 47347952)
    • (2007) Amino Acids , vol.33 , Issue.3 , pp. 423-428
    • Chen, J.1    Liu, H.2    Yang, J.3    Chou, K.-C.4
  • 93
    • 33747197197 scopus 로고    scopus 로고
    • Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers
    • Chou K. C.; Shen H. B.; Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers. J.; Proteome. Res., 2006, 5, 1888-1897.
    • (2006) J. Proteome. Res , vol.5 , pp. 1888-1897
    • Chou, K.C.1    Shen, H.B.2
  • 94
    • 34249318001 scopus 로고    scopus 로고
    • Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
    • DOI 10.1021/pr060635i
    • Chou K. C.; Shen H. B.; Euk-mPLoc: A fusion classifier for largescale eukaryotic protein subcellular location prediction by incorporating multiple sites. J.; Proteome. Res., 2007, 6, 1728-1734. (Pubitemid 46814497)
    • (2007) Journal of Proteome Research , vol.6 , Issue.5 , pp. 1728-1734
    • Chou, K.-C.1    Shen, H.-B.2
  • 95
    • 33846605183 scopus 로고    scopus 로고
    • Large-scale plant protein subcellular location prediction
    • DOI 10.1002/jcb.21096
    • Chou K. C.; Shen H. B.; Large-scale plant protein subcellular location prediction. J.; Cell Biochem., 2007, 100, 665-678. (Pubitemid 46180530)
    • (2007) Journal of Cellular Biochemistry , vol.100 , Issue.3 , pp. 665-678
    • Chou, K.-C.1    Shen, H.-B.2
  • 96
    • 34447095147 scopus 로고    scopus 로고
    • MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
    • Chou K. C.; Shen H. B.; MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochem. Biophys. Res. Commun., 2007, 360, 339-345.
    • (2007) Biochem. Biophys. Res. Commun , vol.360 , pp. 339-345
    • Chou, K.C.1    Shen, H.B.2
  • 97
    • 48649105466 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier
    • Ding Y. S.; Zhang T. L.; Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: an approach with immune genetic algorithm-based ensemble classifier. Pattern Recognit. Lett., 2008, 29, 1887-1892.
    • (2008) Pattern Recognit. Lett , vol.29 , pp. 1887-1892
    • Ding, Y.S.1    Zhang, T.L.2
  • 98
    • 34548697717 scopus 로고    scopus 로고
    • Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network
    • DOI 10.2174/092986607781483778
    • Ding Y. S.; Zhang T. L.; Chou K. C.; Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network. Protein Pept. Lett., 2007, 14, 811-815. (Pubitemid 47416405)
    • (2007) Protein and Peptide Letters , vol.14 , Issue.8 , pp. 811-815
    • Ding, Y.-S.1    Zhang, T.-L.2    Chou, K.-C.3
  • 99
    • 33846010187 scopus 로고    scopus 로고
    • Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence
    • Du P. F.; Li Y. D.; Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence. BMC Bioinformatics, 2006, 7, 518.
    • (2006) BMC Bioinformatics , vol.7 , pp. 518
    • Du, P.F.1    Li, Y.D.2
  • 100
    • 38149007012 scopus 로고    scopus 로고
    • Predicting DNA-binding proteins: Approached from Chou's pseudo amino acid composition and other specific sequence features
    • Fang Y.; Guo Y.; Feng Y.; Li M.; Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features. Amino Acids, 2008, 34, 103-109.
    • (2008) Amino Acids , vol.34 , pp. 103-109
    • Fang, Y.1    Guo, Y.2    Feng, Y.3    Li, M.4
  • 101
    • 46849108913 scopus 로고    scopus 로고
    • Prediction of C-to-U RNA editing sites in plant mitochondria using both biochemical and evolutionary information
    • Du P.; Li Y.; Prediction of C-to-U RNA editing sites in plant mitochondria using both biochemical and evolutionary information. J.; Theor. Biol., 2008, 253, 579-589.
    • (2008) J. Theor. Biol , vol.253 , pp. 579-589
    • Du, P.1    Li, Y.2
  • 102
    • 33747182577 scopus 로고    scopus 로고
    • Classifier ensembles for protein structural class prediction with varying homology
    • DOI 10.1016/j.bbrc.2006.07.141, PII S0006291X06017050
    • Kedarisetti K. D.; Kurgan L.; Dick S.; Classifier ensembles for protein structural class prediction with varying homology. Biochem. Biophys. Res. Commun., 2006, 348, 981-988. (Pubitemid 44233512)
    • (2006) Biochemical and Biophysical Research Communications , vol.348 , Issue.3 , pp. 981-988
    • Kedarisetti, K.D.1    Kurgan, L.2    Dick, S.3
  • 103
    • 38149120433 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach
    • Li F. M.; Li Q. Z.; Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach. Amino Acids, 2008, 34, 119-125.
    • (2008) Amino Acids , vol.34 , pp. 119-125
    • Li, F.M.1    Li, Q.Z.2
  • 104
    • 33846524311 scopus 로고    scopus 로고
    • Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant
    • DOI 10.1016/j.bbrc.2007.01.011, PII S0006291X07000459
    • Lin H.; Li Q. Z.; Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified mahalanobis discriminant. Biochem. Biophys. Res. Commun., 2007, 354, 548-551. (Pubitemid 46161358)
    • (2007) Biochemical and Biophysical Research Communications , vol.354 , Issue.2 , pp. 548-551
    • Lin, H.1    Li, Q.-Z.2
  • 105
    • 34249807035 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components
    • DOI 10.1002/jcc.20554
    • Lin H.; Li Q. Z.; Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components. J.; Comput. Chem., 2007, 28, 1463-1466. (Pubitemid 46853785)
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.9 , pp. 1463-1466
    • Lin, H.1    Li, Q.-Z.2
  • 106
    • 34249051980 scopus 로고    scopus 로고
    • Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments
    • DOI 10.1007/s00726-006-0466-z, Special Issue: Focus on Amino Acid and Protein Modification by Oxygen and Nitrogen Species
    • Liu D. Q.; Liu H.; Shen H. B.; Yang J.; Chou K. C.; Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments. Amino Acids, 2007, 32, 493-496. (Pubitemid 46790944)
    • (2007) Amino Acids , vol.32 , Issue.4 , pp. 493-496
    • Liu, D.-Q.1    Liu, H.2    Shen, H.-B.3    Yang, J.4    Chou, K.-C.5
  • 107
    • 33749596030 scopus 로고    scopus 로고
    • Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
    • DOI 10.1016/j.jtbi.2006.06.014, PII S002251930600261X
    • Mondal S.; Bhavna R.; Babu R. M.; Ramakumar S.; Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification. J.; Theor. Biol., 2006, 243, 252-260. (Pubitemid 44548567)
    • (2006) Journal of Theoretical Biology , vol.243 , Issue.2 , pp. 252-260
    • Mondal, S.1    Bhavna, R.2    Mohan Babu, R.3    Ramakumar, S.4
  • 109
    • 54249116426 scopus 로고    scopus 로고
    • Function prediction of hypothetical proteins without sequence similarity to proteins of known function
    • Kannan S.; Hauth A. M.; Burger G.; Function prediction of hypothetical proteins without sequence similarity to proteins of known function. Protein Pept. Lett., 2008, 15, 1107-1116.
    • (2008) Protein Pept. Lett , vol.15 , pp. 1107-1116
    • Kannan, S.1    Hauth, A.M.2    Burger, G.3
  • 110
    • 21244494465 scopus 로고    scopus 로고
    • Using string kernel to predict signal peptide cleavage site based on subsite coupling model
    • DOI 10.1007/s00726-005-0189-6
    • Wang M.; Yang J.; Chou K. C.; Using string kernel to predict signal peptide cleavage site based on subsite coupling model. Amino Acids, 2005, 28, 395-402. (Pubitemid 40884730)
    • (2005) Amino Acids , vol.28 , Issue.4 , pp. 395-402
    • Wang, M.1    Yang, J.2    Chou, K.-C.3
  • 111
    • 25144470285 scopus 로고    scopus 로고
    • Low-frequency Fourier spectrum for predicting membrane protein types
    • DOI 10.1016/j.bbrc.2005.08.160, PII S0006291X05018693
    • Liu H.; Wang M.; Chou K. C.; Low-frequency Fourier spectrum for predicting membrane protein types Biochem. Biophys. Res. Commun., 2005, 336, 737-739. (Pubitemid 41338330)
    • (2005) Biochemical and Biophysical Research Communications , vol.336 , Issue.3 , pp. 737-739
    • Liu, H.1    Wang, M.2    Chou, K.-C.3
  • 112
    • 35548967965 scopus 로고    scopus 로고
    • Digital coding of amino acids based on hydrophobic index
    • DOI 10.2174/092986607782110293
    • Xiao X.; Chou K. C.; Digital coding of amino acids based on hydrophobic index. Protein Pept. Lett., 2007, 14, 871-875. (Pubitemid 350013824)
    • (2007) Protein and Peptide Letters , vol.14 , Issue.9 , pp. 871-875
    • Xiao, X.1    Chou, K.-C.2
  • 113
    • 15244357858 scopus 로고    scopus 로고
    • Using cellular automata to generate image representation for biological sequences
    • DOI 10.1007/s00726-004-0154-9
    • Xiao X.; Shao S.; Ding Y.; Huang Z.; Chen X.; Chou K. C.; Using cellular automata to generate image representation for biological sequences. Amino Acids, 2005, 28, 29-35. (Pubitemid 40385391)
    • (2005) Amino Acids , vol.28 , Issue.1 , pp. 29-35
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Chen, X.5    Chou, K.-C.6
  • 114
    • 15244350269 scopus 로고    scopus 로고
    • Using complexity measure factor to predict protein subcellular location
    • DOI 10.1007/s00726-004-0148-7
    • Xiao X.; Shao S.; Ding Y.; Huang Z.; Huang Y.; Chou K. C.; Using complexity measure factor to predict protein subcellular location. Amino Acids, 2005, 28, 57-61. (Pubitemid 40385395)
    • (2005) Amino Acids , vol.28 , Issue.1 , pp. 57-61
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Huang, Y.5    Chou, K.-C.6
  • 115
    • 32944461574 scopus 로고    scopus 로고
    • Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
    • DOI 10.1007/s00726-005-0225-6
    • Xiao X.; Shao S.; Ding Y.; Huang Z.; Chou K. C.; Using cellular automata images and pseudo amino acid composition to predict protein subcellular location. Amino Acids, 2006, 30, 49-54. (Pubitemid 43261126)
    • (2006) Amino Acids , vol.30 , Issue.1 , pp. 49-54
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Chou, K.-C.5
  • 116
    • 54249165105 scopus 로고    scopus 로고
    • Toward prediction of binding affinities between the MHC protein and its peptide ligands using quantitative structure-activity relationship approach
    • Tian F.; Lv F.; Zhou P.; Yang Q.; Jalbout A. F.; Toward prediction of binding affinities between the MHC protein and its peptide ligands using quantitative structure-activity relationship approach. Protein Pept. Lett., 2008, 15, 1033-1043.
    • (2008) Protein Pept. Lett , vol.15 , pp. 1033-1043
    • Tian, F.1    Lv, F.2    Zhou, P.3    Yang, Q.4    Jalbout, A.F.5
  • 117
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • Chou K. C.; Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics, 2005, 21, 10-19.
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 118
    • 54749084166 scopus 로고    scopus 로고
    • An intriguing controversy over protein structural class prediction
    • DOI 10.1023/A:1020713915365
    • Zhou G. P.; An intriguing controversy over protein structural class prediction. J.; Protein Chem., 1998, 17, 729-738. (Pubitemid 29062040)
    • (1998) Journal of Protein Chemistry , vol.17 , Issue.8 , pp. 729-738
    • Zhou, G.-P.1
  • 120
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • DOI 10.1016/j.jtbi.2007.06.001, PII S0022519307002809
    • Zhou X. B.; Chen C.; Li Z. C.; Zou X. Y.; Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J.; Theor. Biol., 2007, 248, 546-551. (Pubitemid 47368372)
    • (2007) Journal of Theoretical Biology , vol.248 , Issue.3 , pp. 546-551
    • Zhou, X.-B.1    Chen, C.2    Li, Z.-C.3    Zou, X.-Y.4
  • 121
    • 0029157083 scopus 로고
    • Prediction of protein structural classes
    • Chou K.; Zhang C.; Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30, 275-349.
    • (1995) Crit. Rev. Biochem. Mol. Biol , vol.30 , pp. 275-349
    • Chou, K.1    Zhang, C.2
  • 123
    • 42749090472 scopus 로고    scopus 로고
    • The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
    • Lin H.; The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J.; Theor. Biol., 2008, 252, 350-356.
    • (2008) J. Theor. Biol , vol.252 , pp. 350-356
    • Lin, H.1
  • 124
    • 43549087105 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy
    • DOI 10.2174/092986608784246443
    • Jiang X.; Wei R.; Zhang T. L.; Gu Q.; Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy. Protein Pept. Lett., 2008, 15, 392-396. (Pubitemid 351679342)
    • (2008) Protein and Peptide Letters , vol.15 , Issue.4 , pp. 392-396
    • Jiang, X.1    Wei, R.2    Zhang, T.3    Gu, Q.4
  • 125
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
    • Li F. M.; Li Q. Z.; Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein Pept. Lett., 2008, 15, 612-616.
    • (2008) Protein Pept. Lett , vol.15 , pp. 612-616
    • Li, F.M.1    Li, Q.Z.2
  • 126
    • 49449087313 scopus 로고    scopus 로고
    • Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition
    • Lin H.; Ding H.; Guo F. B.; Zhang A. Y.; Huang J.; Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition. Protein Pept. Lett., 2008, 15, 739-744.
    • (2008) Protein Pept. Lett , vol.15 , pp. 739-744
    • Lin, H.1    Ding, H.2    Guo, F.B.3    Zhang, A.Y.4    Huang, J.5
  • 127
    • 52149087297 scopus 로고    scopus 로고
    • Predicting membrane protein types by the LLDA algorithm
    • Wang T.; Yang J.; Shen H. B.; Chou K. C.; Predicting membrane protein types by the LLDA algorithm. Protein Pept. Lett., 2008, 15, 915-921.
    • (2008) Protein Pept. Lett , vol.15 , pp. 915-921
    • Wang, T.1    Yang, J.2    Shen, H.B.3    Chou, K.C.4
  • 128
    • 45649083292 scopus 로고    scopus 로고
    • Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition
    • Zhang G. Y.; Fang B. S.; Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition. J.; Theor. Biol., 2008, 253, 310-315.
    • (2008) J. Theor. Biol , vol.253 , pp. 310-315
    • Zhang, G.Y.1    Fang, B.S.2
  • 129
    • 54249139729 scopus 로고    scopus 로고
    • Predicting lipase types by improved Chou's pseudo-amino acid composition
    • Zhang G. Y.; Li H. C.; Fang B. S.; Predicting lipase types by improved Chou's pseudo-amino acid composition. Protein Pept. Lett., 2008, 15, 1132-1137.
    • (2008) Protein Pept. Lett , vol.15 , pp. 1132-1137
    • Zhang, G.Y.1    Li, H.C.2    Fang, B.S.3
  • 130
    • 84926662675 scopus 로고
    • Nearest neighbor pattern classification
    • Cover T.; Hart P.; Nearest neighbor pattern classification. IEEE Trans. Inf. Theo., 1967, 13, 21-27.
    • (1967) IEEE Trans. Inf. Theo , vol.13 , pp. 21-27
    • Cover, T.1    Hart, P.2
  • 131
    • 0026674246 scopus 로고
    • Predicting protein secondary structure with a nearest-neighbor algorithm
    • Salzberg S.; Cost S.; Predicting protein secondary structure with a nearest-neighbor algorithm. J.; Mol. Biol., 1992, 227, 371-374.
    • (1992) J. Mol. Biol , vol.227 , pp. 371-374
    • Salzberg, S.1    Cost, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.