메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins

Author keywords

[No Author keywords available]

Indexed keywords

ACCESSIBLE SURFACE AREAS; AMINO ACID COMPOSITIONS; BIOCHEMICAL FUNCTIONS; COMPUTATIONAL APPROACH; INTERACTION SITE; PRECISION AND RECALL; PREDICTION PROCESS; PROTEIN-BINDING SITES;

EID: 34250164675     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-147     Document Type: Article
Times cited : (45)

References (63)
  • 1
    • 30144443247 scopus 로고    scopus 로고
    • Similarity networks of protein binding sites
    • 10.1002/prot.20752 16299776
    • Zhang Z Grigorov MG Similarity networks of protein binding sites Proteins 2006 62 2 470-478 10.1002/prot.20752 16299776
    • (2006) Proteins , vol.62 , Issue.2 , pp. 470-478
    • Zhang, Z.1    Grigorov, M.G.2
  • 2
    • 4544230537 scopus 로고    scopus 로고
    • Distinguishing structural and functional restraints in evolution in order to identify interaction sites
    • 10.1016/j.jmb.2004.08.022 15364576
    • Chelliah V Chen L Blundell TL Lovell SC Distinguishing structural and functional restraints in evolution in order to identify interaction sites J Mol Biol 2004 342 5 1487-1504 10.1016/j.jmb.2004.08.022 15364576
    • (2004) J Mol Biol , vol.342 , Issue.5 , pp. 1487-1504
    • Chelliah, V.1    Chen, L.2    Blundell, T.L.3    Lovell, S.C.4
  • 3
    • 0031565729 scopus 로고    scopus 로고
    • Analysis of protein-protein interaction sites using surface patches
    • 10.1006/jmbi.1997.1234 9299342
    • Jones S Thornton JM Analysis of protein-protein interaction sites using surface patches J Mol Biol 1997 272 1 121-132 10.1006/jmbi.1997.1234 9299342
    • (1997) J Mol Biol , vol.272 , Issue.1 , pp. 121-132
    • Jones, S.1    Thornton, J.M.2
  • 4
    • 27644527039 scopus 로고    scopus 로고
    • Sequence variation in ligand binding sites in proteins
    • 1261162 16194281 10.1186/1471-2105-6-240
    • Magliery TJ Regan L Sequence variation in ligand binding sites in proteins BMC Bioinformatics 2005 6 240 1261162 16194281 10.1186/ 1471-2105-6-240
    • (2005) BMC Bioinformatics , vol.6 , pp. 240
    • Magliery, T.J.1    Regan, L.2
  • 5
    • 0003187567 scopus 로고    scopus 로고
    • The atomic structure of protein-protein recognition sites
    • 10.1006/jmbi.1998.2439 9925793
    • Lo Conte L Chothia C Janin J The atomic structure of protein-protein recognition sites J Mol Biol 1999 285 5 2177-2198 10.1006/jmbi.1998.2439 9925793
    • (1999) J Mol Biol , vol.285 , Issue.5 , pp. 2177-2198
    • Lo Conte, L.1    Chothia, C.2    Janin, J.3
  • 6
    • 17444372787 scopus 로고    scopus 로고
    • Improved prediction of protein-protein binding sites using a support vector machines approach
    • 10.1093/bioinformatics/bti242 15613384
    • Bradford JR Westhead DR Improved prediction of protein-protein binding sites using a support vector machines approach Bioinformatics 2005 21 8 1487-1494 10.1093/bioinformatics/bti242 15613384
    • (2005) Bioinformatics , vol.21 , Issue.8 , pp. 1487-1494
    • Bradford, J.R.1    Westhead, D.R.2
  • 7
    • 0037474541 scopus 로고    scopus 로고
    • Structural characterisation and functional significance of transient protein-protein interactions
    • 10.1016/S0022-2836(02)01281-0 12527304
    • Nooren IM Thornton JM Structural characterisation and functional significance of transient protein-protein interactions J Mol Biol 2003 325 5 991-1018 10.1016/S0022-2836(02)01281-0 12527304
    • (2003) J Mol Biol , vol.325 , Issue.5 , pp. 991-1018
    • Nooren, I.M.1    Thornton, J.M.2
  • 8
    • 33748779553 scopus 로고    scopus 로고
    • Insights into protein-protein interfaces using a Bayesian network prediction method
    • 10.1016/j.jmb.2006.07.028 16919296
    • Bradford JR Needham CJ Bulpitt AJ Westhead DR Insights into protein-protein interfaces using a Bayesian network prediction method J Mol Biol 2006 362 2 365-386 10.1016/j.jmb.2006.07.028 16919296
    • (2006) J Mol Biol , vol.362 , Issue.2 , pp. 365-386
    • Bradford, J.R.1    Needham, C.J.2    Bulpitt, A.J.3    Westhead, D.R.4
  • 9
    • 0037093645 scopus 로고    scopus 로고
    • Dissecting protein-protein recognition sites
    • 10.1002/prot.10085 11948787
    • Chakrabarti P Janin J Dissecting protein-protein recognition sites Proteins 2002 47 3 334-343 10.1002/prot.10085 11948787
    • (2002) Proteins , vol.47 , Issue.3 , pp. 334-343
    • Chakrabarti, P.1    Janin, J.2
  • 10
    • 25444510057 scopus 로고    scopus 로고
    • Variation in structural location and amino acid conservation of functional sites in protein domain families
    • 1215474 16122386 10.1186/1471-2105-6-210
    • Pils B Copley RR Schultz J Variation in structural location and amino acid conservation of functional sites in protein domain families BMC Bioinformatics 2005 6 210 1215474 16122386 10.1186/1471-2105-6-210
    • (2005) BMC Bioinformatics , vol.6 , pp. 210
    • Pils, B.1    Copley, R.R.2    Schultz, J.3
  • 11
    • 0029913807 scopus 로고    scopus 로고
    • An evolutionary trace method defines binding surfaces common to protein families
    • 10.1006/jmbi.1996.0167 8609628
    • Lichtarge O Bourne HR Cohen FE An evolutionary trace method defines binding surfaces common to protein families J Mol Biol 1996 257 2 342-358 10.1006/jmbi.1996.0167 8609628
    • (1996) J Mol Biol , vol.257 , Issue.2 , pp. 342-358
    • Lichtarge, O.1    Bourne, H.R.2    Cohen, F.E.3
  • 12
    • 33747840720 scopus 로고    scopus 로고
    • ET viewer: An application for predicting and visualizing functional sites in protein structures
    • 10.1093/bioinformatics/btl285 16809388
    • Morgan DH Kristensen DM Mittelman D Lichtarge O ET viewer: An application for predicting and visualizing functional sites in protein structures Bioinformatics 2006 22 16 2049-2050 10.1093/bioinformatics/ btl285 16809388
    • (2006) Bioinformatics , vol.22 , Issue.16 , pp. 2049-2050
    • Morgan, D.H.1    Kristensen, D.M.2    Mittelman, D.3    Lichtarge, O.4
  • 13
    • 0037423759 scopus 로고    scopus 로고
    • An accurate, sensitive, and scalable method to identify functional sites in protein structures
    • 10.1016/S0022-2836(02)01336-0 12547207
    • Yao H Kristensen DM Mihalek I Sowa ME Shaw C Kimmel M Kavraki L Lichtarge O An accurate, sensitive, and scalable method to identify functional sites in protein structures J Mol Biol 2003 326 1 255-261 10.1016/S0022-2836(02)01336-0 12547207
    • (2003) J Mol Biol , vol.326 , Issue.1 , pp. 255-261
    • Yao, H.1    Kristensen, D.M.2    Mihalek, I.3    Sowa, M.E.4    Shaw, C.5    Kimmel, M.6    Kavraki, L.7    Lichtarge, O.8
  • 14
    • 33748267918 scopus 로고    scopus 로고
    • Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites
    • 10.1002/prot.21101 16894615
    • Yao H Mihalek I Lichtarge O Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites Proteins 2006 65 1 111-123 10.1002/prot.21101 16894615
    • (2006) Proteins , vol.65 , Issue.1 , pp. 111-123
    • Yao, H.1    Mihalek, I.2    Lichtarge, O.3
  • 15
    • 31944439550 scopus 로고    scopus 로고
    • Exploiting sequence and structure homologs to identify protein-protein binding sites
    • 10.1002/prot.20741 16329107
    • Chung JL Wang W Bourne PE Exploiting sequence and structure homologs to identify protein-protein binding sites Proteins 2006 62 3 630-640 10.1002/prot.20741 16329107
    • (2006) Proteins , vol.62 , Issue.3 , pp. 630-640
    • Chung, J.L.1    Wang, W.2    Bourne, P.E.3
  • 16
    • 27144551715 scopus 로고    scopus 로고
    • Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design
    • 1258172 16224101 10.1093/nar/gki894
    • Cheng G Qian B Samudrala R Baker D Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design Nucleic Acids Res 2005 33 18 5861-5867 1258172 16224101 10.1093/nar/gki894
    • (2005) Nucleic Acids Res , vol.33 , Issue.18 , pp. 5861-5867
    • Cheng, G.1    Qian, B.2    Samudrala, R.3    Baker, D.4
  • 17
    • 1842454912 scopus 로고    scopus 로고
    • Prediction of functional sites by analysis of sequence and structure conservation
    • 10.1110/ps.03465504 15010543
    • Panchenko AR Kondrashov F Bryant S Prediction of functional sites by analysis of sequence and structure conservation Protein Sci 2004 13 4 884-892 10.1110/ps.03465504 15010543
    • (2004) Protein Sci , vol.13 , Issue.4 , pp. 884-892
    • Panchenko, A.R.1    Kondrashov, F.2    Bryant, S.3
  • 18
    • 0036681416 scopus 로고    scopus 로고
    • Scoring residue conservation
    • 10.1002/prot.10146 12112692
    • Valdar WS Scoring residue conservation Proteins 2002 48 2 227-241 10.1002/prot.10146 12112692
    • (2002) Proteins , vol.48 , Issue.2 , pp. 227-241
    • Valdar, W.S.1
  • 19
    • 11344278220 scopus 로고    scopus 로고
    • Predicting protein functional sites with phylogenetic motifs
    • 10.1002/prot.20321 15573397
    • La D Sutch B Livesay DR Predicting protein functional sites with phylogenetic motifs Proteins 2005 58 2 309-320 10.1002/prot.20321 15573397
    • (2005) Proteins , vol.58 , Issue.2 , pp. 309-320
    • La, D.1    Sutch, B.2    Livesay, D.R.3
  • 20
    • 33644845048 scopus 로고    scopus 로고
    • Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships
    • 10.1002/prot.20830 16385560
    • Kim Y Subramaniam S Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships Proteins 2006 62 4 1115-1124 10.1002/prot.20830 16385560
    • (2006) Proteins , vol.62 , Issue.4 , pp. 1115-1124
    • Kim, Y.1    Subramaniam, S.2
  • 21
    • 0037404760 scopus 로고    scopus 로고
    • Motif-based construction of a functional map for mammalian olfactory receptors
    • 10.1016/S0888-7543(03)00022-3 12706103
    • Liu AH Zhang X Stolovitzky GA Califano A Firestein SJ Motif-based construction of a functional map for mammalian olfactory receptors Genomics 2003 81 5 443-456 10.1016/S0888-7543(03)00022-3 12706103
    • (2003) Genomics , vol.81 , Issue.5 , pp. 443-456
    • Liu, A.H.1    Zhang, X.2    Stolovitzky, G.A.3    Califano, A.4    Firestein, S.J.5
  • 22
    • 30644470508 scopus 로고    scopus 로고
    • Predicting protein interaction sites from residue spatial sequence profile and evolution rate
    • 10.1016/j.febslet.2005.11.081 16376878
    • Wang B Chen P Huang DS Li JJ Lok TM Lyu MR Predicting protein interaction sites from residue spatial sequence profile and evolution rate FEBS Lett 2006 580 2 380-384 10.1016/j.febslet.2005.11.081 16376878
    • (2006) FEBS Lett , vol.580 , Issue.2 , pp. 380-384
    • Wang, B.1    Chen, P.2    Huang, D.S.3    Li, J.J.4    Lok, T.M.5    Lyu, M.R.6
  • 23
    • 13244292990 scopus 로고    scopus 로고
    • A two-stage classifier for identification of protein-protein interface residues
    • 10.1093/bioinformatics/bth920 15262822
    • Yan C Dobbs D Honavar V A two-stage classifier for identification of protein-protein interface residues Bioinformatics 2004 20 Suppl 1 I371-I378 10.1093/bioinformatics/bth920 15262822
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1
    • Yan, C.1    Dobbs, D.2    Honavar, V.3
  • 24
    • 19544390737 scopus 로고    scopus 로고
    • REVCOM: A robust Bayesian method for evolutionary rate estimation
    • 10.1093/bioinformatics/bti347 15749694
    • Bordner AJ Abagyan R REVCOM: A robust Bayesian method for evolutionary rate estimation Bioinformatics 2005 21 10 2315-2321 10.1093/ bioinformatics/bti347 15749694
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2315-2321
    • Bordner, A.J.1    Abagyan, R.2
  • 25
    • 25444527443 scopus 로고    scopus 로고
    • Improved prediction of critical residues for protein function based on network and phylogenetic analyses
    • 1208857 16124876 10.1186/1471-2105-6-213
    • Thibert B Bredesen DE Del Rio G Improved prediction of critical residues for protein function based on network and phylogenetic analyses BMC Bioinformatics 2005 6 1 213 1208857 16124876 10.1186/1471-2105-6-213
    • (2005) BMC Bioinformatics , vol.6 , Issue.1 , pp. 213
    • Thibert, B.1    Bredesen, D.E.2    Del Rio, G.3
  • 26
    • 0035882570 scopus 로고    scopus 로고
    • Prediction of protein interaction sites from sequence profile and residue neighbor list
    • 10.1002/prot.1099 11455607
    • Zhou HX Shan Y Prediction of protein interaction sites from sequence profile and residue neighbor list Proteins 2001 44 3 336-343 10.1002/ prot.1099 11455607
    • (2001) Proteins , vol.44 , Issue.3 , pp. 336-343
    • Zhou, H.X.1    Shan, Y.2
  • 27
    • 33750056673 scopus 로고    scopus 로고
    • ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility
    • 10.1002/prot.21086 16972285
    • Meiler J Baker D ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility Proteins 2006 65 3 538-548 10.1002/prot.21086 16972285
    • (2006) Proteins , vol.65 , Issue.3 , pp. 538-548
    • Meiler, J.1    Baker, D.2
  • 28
    • 0036137713 scopus 로고    scopus 로고
    • Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in AutoDock
    • 10.1002/prot.10028 11746701
    • Osterberg F Morris GM Sanner MF Olson AJ Goodsell DS Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in AutoDock Proteins 2002 46 34-40 10.1002/prot.10028 11746701
    • (2002) Proteins , vol.46 , pp. 34-40
    • Osterberg, F.1    Morris, G.M.2    Sanner, M.F.3    Olson, A.J.4    Goodsell, D.S.5
  • 29
    • 18744394070 scopus 로고    scopus 로고
    • Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites
    • 10.1093/bioinformatics/bti315 15701681
    • Laurie AT Jackson RM Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites Bioinformatics 2005 21 9 1908-1916 10.1093/bioinformatics/bti315 15701681
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 1908-1916
    • Laurie, A.T.1    Jackson, R.M.2
  • 30
    • 17144383951 scopus 로고    scopus 로고
    • A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes
    • 10.1021/jm049314d 15801826
    • Zhang C Liu S Zhu Q Zhou Y A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes J Med Chem 2005 48 7 2325-2335 10.1021/jm049314d 15801826
    • (2005) J Med Chem , vol.48 , Issue.7 , pp. 2325-2335
    • Zhang, C.1    Liu, S.2    Zhu, Q.3    Zhou, Y.4
  • 31
    • 14744305761 scopus 로고    scopus 로고
    • Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families
    • 10.1016/j.jmb.2005.01.044 15755451
    • Torrance JW Bartlett GJ Porter CT Thornton JM Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families J Mol Biol 2005 347 3 565-581 10.1016/ j.jmb.2005.01.044 15755451
    • (2005) J Mol Biol , vol.347 , Issue.3 , pp. 565-581
    • Torrance, J.W.1    Bartlett, G.J.2    Porter, C.T.3    Thornton, J.M.4
  • 35
    • 1842526090 scopus 로고    scopus 로고
    • ProMate: A structure based prediction program to identify the location of protein-protein binding sites
    • 10.1016/j.jmb.2004.02.040 15050833
    • Neuvirth H Raz R Schreiber G ProMate: A structure based prediction program to identify the location of protein-protein binding sites J Mol Biol 2004 338 1 181-199 10.1016/j.jmb.2004.02.040 15050833
    • (2004) J Mol Biol , vol.338 , Issue.1 , pp. 181-199
    • Neuvirth, H.1    Raz, R.2    Schreiber, G.3
  • 36
    • 19544369864 scopus 로고    scopus 로고
    • An evolution based classifier for prediction of protein interfaces without using protein structures
    • 10.1093/bioinformatics/bti340 15728113
    • Res I Mihalek I Lichtarge O An evolution based classifier for prediction of protein interfaces without using protein structures Bioinformatics 2005 21 10 2496-2501 10.1093/bioinformatics/bti340 15728113
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2496-2501
    • Res, I.1    Mihalek, I.2    Lichtarge, O.3
  • 37
    • 33746495377 scopus 로고    scopus 로고
    • Predicting DNA-binding sites of proteins from amino acid sequence
    • 1534068 16712732 10.1186/1471-2105-7-262
    • Yan C Terribilini M Wu F Jernigan RL Dobbs D Honavar V Predicting DNA-binding sites of proteins from amino acid sequence BMC Bioinformatics 2006 7 262 1534068 16712732 10.1186/1471-2105-7-262
    • (2006) BMC Bioinformatics , vol.7 , pp. 262
    • Yan, C.1    Terribilini, M.2    Wu, F.3    Jernigan, R.L.4    Dobbs, D.5    Honavar, V.6
  • 38
    • 33747150197 scopus 로고    scopus 로고
    • Protein binding site prediction using an empirical scoring function
    • 1540721
    • Liang S Zhang C Liu S Zhou Y Protein binding site prediction using an empirical scoring function Nucleic Acids Res 2006 34 13 3698-3707 1540721 16893954 10.1093/nar/gkl454
    • (2006) Nucleic Acids Res , vol.34 , pp. 3698-3707
    • Liang, S.1    Zhang, C.2    Liu, S.3    Zhou, Y.4
  • 39
    • 33749336161 scopus 로고    scopus 로고
    • Localization of binding sites in protein structures by optimization of a composite scoring function
    • 16963645
    • Rossi A Marti-Renom MA Sali A Localization of binding sites in protein structures by optimization of a composite scoring function Protein Sci 2006 16963645
    • (2006) Protein Sci
    • Rossi, A.1    Marti-Renom, M.A.2    Sali, A.3
  • 40
    • 33749615646 scopus 로고    scopus 로고
    • A machine learning strategy to identify candidate binding sites in human protein-coding sequence
    • 1592515 17002805 10.1186/1471-2105-7-419
    • Down T Leong B Hubbard TJ A machine learning strategy to identify candidate binding sites in human protein-coding sequence BMC Bioinformatics 2006 7 419 1592515 17002805 10.1186/1471-2105-7-419
    • (2006) BMC Bioinformatics , vol.7 , pp. 419
    • Down, T.1    Leong, B.2    Hubbard, T.J.3
  • 41
    • 33744803962 scopus 로고    scopus 로고
    • Predicting calcium-binding sites in proteins - A graph theory and geometry approach
    • 10.1002/prot.20973 16617426
    • Deng H Chen G Yang W Yang JJ Predicting calcium-binding sites in proteins - a graph theory and geometry approach Proteins 2006 64 1 34 42 10.1002/prot.20973 16617426
    • (2006) Proteins , vol.64 , Issue.1 , pp. 34-42
    • Deng, H.1    Chen, G.2    Yang, W.3    Yang, J.J.4
  • 42
    • 24344484686 scopus 로고    scopus 로고
    • Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data
    • 10.1002/prot.20514 16080151
    • Chen H Zhou HX Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data Proteins 2005 61 1 21-35 10.1002/prot.20514 16080151
    • (2005) Proteins , vol.61 , Issue.1 , pp. 21-35
    • Chen, H.1    Zhou, H.X.2
  • 43
    • 15244358006 scopus 로고    scopus 로고
    • Support vector machines for learning to identify the critical positions of a protein
    • 10.1016/j.jtbi.2004.11.037 15784270
    • Dubey A Realff MJ Lee JH Bommarius AS Support vector machines for learning to identify the critical positions of a protein J Theor Biol 2005 234 3 351-361 10.1016/j.jtbi.2004.11.037 15784270
    • (2005) J Theor Biol , vol.234 , Issue.3 , pp. 351-361
    • Dubey, A.1    Realff, M.J.2    Lee, J.H.3    Bommarius, A.S.4
  • 44
    • 1842765629 scopus 로고    scopus 로고
    • Prediction of protein-protein interaction sites using support vector machines
    • 10.1093/protein/gzh020 15047913
    • Koike A Takagi T Prediction of protein-protein interaction sites using support vector machines Protein Eng Des Sel 2004 17 2 165-173 10.1093/ protein/gzh020 15047913
    • (2004) Protein Eng Des Sel , vol.17 , Issue.2 , pp. 165-173
    • Koike, A.1    Takagi, T.2
  • 45
    • 34047104592 scopus 로고    scopus 로고
    • Protein-protein interaction site prediction based on conditional random fields
    • To be published
    • Li MH Lin L Wang XL Liu T Protein-protein interaction site prediction based on conditional random fields Bioinformatics 2007 To be published
    • (2007) Bioinformatics
    • Li, M.H.1    Lin, L.2    Wang, X.L.3    Liu, T.4
  • 46
    • 0037229456 scopus 로고    scopus 로고
    • Analysing six types of protein-protein interfaces
    • 10.1016/S0022-2836(02)01223-8 12488102
    • Ofran Y Rost B Analysing six types of protein-protein interfaces J Mol Biol 2003 325 2 377 387 10.1016/S0022-2836(02)01223-8 12488102
    • (2003) J Mol Biol , vol.325 , Issue.2 , pp. 377-387
    • Ofran, Y.1    Rost, B.2
  • 47
  • 48
    • 33645879534 scopus 로고    scopus 로고
    • Domain boundary prediction based on profile domain linker propensity index
    • 16531120
    • Dong Q Wang XL Lin L Xu Z Domain boundary prediction based on profile domain linker propensity index Comput Biol Chem 2006 30 2 127-133 16531120
    • (2006) Comput Biol Chem , vol.30 , Issue.2 , pp. 127-133
    • Dong, Q.1    Wang, X.L.2    Lin, L.3    Xu, Z.4
  • 49
    • 33747135021 scopus 로고    scopus 로고
    • Novel knowledge-based mean force potential at the profile level
    • 1534065 16803615 10.1186/1471-2105-7-324
    • Dong Qw Wang XL Lin L Novel knowledge-based mean force potential at the profile level BMC Bioinformatics 2006 7 324 1534065 16803615 10.1186/ 1471-2105-7-324
    • (2006) BMC Bioinformatics , vol.7 , pp. 324
    • Dong, Q.W.1    Wang, X.L.2    Lin, L.3
  • 51
    • 0038356582 scopus 로고    scopus 로고
    • Predicted protein-protein interaction sites from local sequence information
    • 10.1016/S0014-5793(03)00456-3 12782323
    • Ofran Y Rost B Predicted protein-protein interaction sites from local sequence information FEBS Lett 2003 544 1-3 236 239 10.1016/ S0014-5793(03)00456-3 12782323
    • (2003) FEBS Lett , vol.544 , Issue.1-3 , pp. 236-239
    • Ofran, Y.1    Rost, B.2
  • 52
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • 10.1002/prot.340090107 2017436
    • Sander C Schneider R Database of homology-derived protein structures and the structural meaning of sequence alignment Proteins 1991 9 1 56-68 10.1002/prot.340090107 2017436
    • (1991) Proteins , vol.9 , Issue.1 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 53
    • 0029935769 scopus 로고    scopus 로고
    • Evolutionary conservation of RecA genes in relation to protein structure and function
    • 177882 8606161
    • Karlin S Brocchieri L Evolutionary conservation of RecA genes in relation to protein structure and function J Bacteriol 1996 178 7 1881-1894 177882 8606161
    • (1996) J Bacteriol , vol.178 , Issue.7 , pp. 1881-1894
    • Karlin, S.1    Brocchieri, L.2
  • 54
    • 0035178383 scopus 로고    scopus 로고
    • Protein-protein interfaces: Analysis of amino acid conservation in homodimers
    • 10.1002/1097-0134(20010101)42:1<108::AID-PROT110>3.0.CO;2-O 11093265
    • Valdar WS Thornton JM Protein-protein interfaces: Analysis of amino acid conservation in homodimers Proteins 2001 42 1 108-124 10.1002/ 1097-0134(20010101)42:1<108::AID-PROT110>3.0.CO;2-O 11093265
    • (2001) Proteins , vol.42 , Issue.1 , pp. 108-124
    • Valdar, W.S.1    Thornton, J.M.2
  • 56
    • 23044487169 scopus 로고    scopus 로고
    • Statistical analysis and prediction of protein-protein interfaces
    • 10.1002/prot.20433 15906321
    • Bordner AJ Abagyan R Statistical analysis and prediction of protein-protein interfaces Proteins 2005 60 3 353-366 10.1002/prot.20433 15906321
    • (2005) Proteins , vol.60 , Issue.3 , pp. 353-366
    • Bordner, A.J.1    Abagyan, R.2
  • 57
    • 0032169688 scopus 로고    scopus 로고
    • PQS: A protein quaternary structure file server
    • 10.1016/S0968-0004(98)01253-5 9787643
    • Henrick K Thornton JM PQS: A protein quaternary structure file server Trends Biochem Sci 1998 23 9 358-361 10.1016/S0968-0004(98)01253-5 9787643
    • (1998) Trends Biochem Sci , vol.23 , Issue.9 , pp. 358-361
    • Henrick, K.1    Thornton, J.M.2
  • 58
    • 0041312697 scopus 로고    scopus 로고
    • Diversity of protein-protein interactions
    • 165629 12853464 10.1093/emboj/cdg359
    • Nooren IM Thornton JM Diversity of protein-protein interactions Embo J 2003 22 14 3486-3492 165629 12853464 10.1093/emboj/cdg359
    • (2003) Embo J , vol.22 , Issue.14 , pp. 3486-3492
    • Nooren, I.M.1    Thornton, J.M.2
  • 60
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
    • 99070 11752321 10.1093/nar/30.1.303
    • Xenarios I Salwinski L Duan XJ Higney P Kim SM Eisenberg D DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions Nucleic Acids Res 2002 30 1 303-305 99070 11752321 10.1093/nar/30.1.303
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 303-305
    • Xenarios, I.1    Salwinski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.M.5    Eisenberg, D.6
  • 61
    • 0020997912 scopus 로고
    • Dictionary of Secondary structure in Proteins: Pattern Recognition of Hydrogenbonded and Geometrical Features
    • 10.1002/bip.360221211 6667333
    • Kabsch W Sander C Dictionary of Secondary structure in Proteins: Pattern Recognition of Hydrogenbonded and Geometrical Features Biopolymers 1983 22 12 2577-2637 10.1002/bip.360221211 6667333
    • (1983) Biopolymers , vol.22 , Issue.12 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 63
    • 0003710380 scopus 로고    scopus 로고
    • LIBSVM: A library for support vector machines
    • Chang CC Lin CJ LIBSVM: A library for support vector machines 2001 http://www.csie.ntu.edu.tw/~cjlin/libsvm
    • (2001)
    • Chang, C.C.1    Lin, C.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.