-
1
-
-
30144443247
-
Similarity networks of protein binding sites
-
10.1002/prot.20752 16299776
-
Zhang Z Grigorov MG Similarity networks of protein binding sites Proteins 2006 62 2 470-478 10.1002/prot.20752 16299776
-
(2006)
Proteins
, vol.62
, Issue.2
, pp. 470-478
-
-
Zhang, Z.1
Grigorov, M.G.2
-
2
-
-
4544230537
-
Distinguishing structural and functional restraints in evolution in order to identify interaction sites
-
10.1016/j.jmb.2004.08.022 15364576
-
Chelliah V Chen L Blundell TL Lovell SC Distinguishing structural and functional restraints in evolution in order to identify interaction sites J Mol Biol 2004 342 5 1487-1504 10.1016/j.jmb.2004.08.022 15364576
-
(2004)
J Mol Biol
, vol.342
, Issue.5
, pp. 1487-1504
-
-
Chelliah, V.1
Chen, L.2
Blundell, T.L.3
Lovell, S.C.4
-
3
-
-
0031565729
-
Analysis of protein-protein interaction sites using surface patches
-
10.1006/jmbi.1997.1234 9299342
-
Jones S Thornton JM Analysis of protein-protein interaction sites using surface patches J Mol Biol 1997 272 1 121-132 10.1006/jmbi.1997.1234 9299342
-
(1997)
J Mol Biol
, vol.272
, Issue.1
, pp. 121-132
-
-
Jones, S.1
Thornton, J.M.2
-
4
-
-
27644527039
-
Sequence variation in ligand binding sites in proteins
-
1261162 16194281 10.1186/1471-2105-6-240
-
Magliery TJ Regan L Sequence variation in ligand binding sites in proteins BMC Bioinformatics 2005 6 240 1261162 16194281 10.1186/ 1471-2105-6-240
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 240
-
-
Magliery, T.J.1
Regan, L.2
-
5
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
10.1006/jmbi.1998.2439 9925793
-
Lo Conte L Chothia C Janin J The atomic structure of protein-protein recognition sites J Mol Biol 1999 285 5 2177-2198 10.1006/jmbi.1998.2439 9925793
-
(1999)
J Mol Biol
, vol.285
, Issue.5
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
6
-
-
17444372787
-
Improved prediction of protein-protein binding sites using a support vector machines approach
-
10.1093/bioinformatics/bti242 15613384
-
Bradford JR Westhead DR Improved prediction of protein-protein binding sites using a support vector machines approach Bioinformatics 2005 21 8 1487-1494 10.1093/bioinformatics/bti242 15613384
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1487-1494
-
-
Bradford, J.R.1
Westhead, D.R.2
-
7
-
-
0037474541
-
Structural characterisation and functional significance of transient protein-protein interactions
-
10.1016/S0022-2836(02)01281-0 12527304
-
Nooren IM Thornton JM Structural characterisation and functional significance of transient protein-protein interactions J Mol Biol 2003 325 5 991-1018 10.1016/S0022-2836(02)01281-0 12527304
-
(2003)
J Mol Biol
, vol.325
, Issue.5
, pp. 991-1018
-
-
Nooren, I.M.1
Thornton, J.M.2
-
8
-
-
33748779553
-
Insights into protein-protein interfaces using a Bayesian network prediction method
-
10.1016/j.jmb.2006.07.028 16919296
-
Bradford JR Needham CJ Bulpitt AJ Westhead DR Insights into protein-protein interfaces using a Bayesian network prediction method J Mol Biol 2006 362 2 365-386 10.1016/j.jmb.2006.07.028 16919296
-
(2006)
J Mol Biol
, vol.362
, Issue.2
, pp. 365-386
-
-
Bradford, J.R.1
Needham, C.J.2
Bulpitt, A.J.3
Westhead, D.R.4
-
9
-
-
0037093645
-
Dissecting protein-protein recognition sites
-
10.1002/prot.10085 11948787
-
Chakrabarti P Janin J Dissecting protein-protein recognition sites Proteins 2002 47 3 334-343 10.1002/prot.10085 11948787
-
(2002)
Proteins
, vol.47
, Issue.3
, pp. 334-343
-
-
Chakrabarti, P.1
Janin, J.2
-
10
-
-
25444510057
-
Variation in structural location and amino acid conservation of functional sites in protein domain families
-
1215474 16122386 10.1186/1471-2105-6-210
-
Pils B Copley RR Schultz J Variation in structural location and amino acid conservation of functional sites in protein domain families BMC Bioinformatics 2005 6 210 1215474 16122386 10.1186/1471-2105-6-210
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 210
-
-
Pils, B.1
Copley, R.R.2
Schultz, J.3
-
11
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
10.1006/jmbi.1996.0167 8609628
-
Lichtarge O Bourne HR Cohen FE An evolutionary trace method defines binding surfaces common to protein families J Mol Biol 1996 257 2 342-358 10.1006/jmbi.1996.0167 8609628
-
(1996)
J Mol Biol
, vol.257
, Issue.2
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
12
-
-
33747840720
-
ET viewer: An application for predicting and visualizing functional sites in protein structures
-
10.1093/bioinformatics/btl285 16809388
-
Morgan DH Kristensen DM Mittelman D Lichtarge O ET viewer: An application for predicting and visualizing functional sites in protein structures Bioinformatics 2006 22 16 2049-2050 10.1093/bioinformatics/ btl285 16809388
-
(2006)
Bioinformatics
, vol.22
, Issue.16
, pp. 2049-2050
-
-
Morgan, D.H.1
Kristensen, D.M.2
Mittelman, D.3
Lichtarge, O.4
-
13
-
-
0037423759
-
An accurate, sensitive, and scalable method to identify functional sites in protein structures
-
10.1016/S0022-2836(02)01336-0 12547207
-
Yao H Kristensen DM Mihalek I Sowa ME Shaw C Kimmel M Kavraki L Lichtarge O An accurate, sensitive, and scalable method to identify functional sites in protein structures J Mol Biol 2003 326 1 255-261 10.1016/S0022-2836(02)01336-0 12547207
-
(2003)
J Mol Biol
, vol.326
, Issue.1
, pp. 255-261
-
-
Yao, H.1
Kristensen, D.M.2
Mihalek, I.3
Sowa, M.E.4
Shaw, C.5
Kimmel, M.6
Kavraki, L.7
Lichtarge, O.8
-
14
-
-
33748267918
-
Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites
-
10.1002/prot.21101 16894615
-
Yao H Mihalek I Lichtarge O Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites Proteins 2006 65 1 111-123 10.1002/prot.21101 16894615
-
(2006)
Proteins
, vol.65
, Issue.1
, pp. 111-123
-
-
Yao, H.1
Mihalek, I.2
Lichtarge, O.3
-
15
-
-
31944439550
-
Exploiting sequence and structure homologs to identify protein-protein binding sites
-
10.1002/prot.20741 16329107
-
Chung JL Wang W Bourne PE Exploiting sequence and structure homologs to identify protein-protein binding sites Proteins 2006 62 3 630-640 10.1002/prot.20741 16329107
-
(2006)
Proteins
, vol.62
, Issue.3
, pp. 630-640
-
-
Chung, J.L.1
Wang, W.2
Bourne, P.E.3
-
16
-
-
27144551715
-
Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design
-
1258172 16224101 10.1093/nar/gki894
-
Cheng G Qian B Samudrala R Baker D Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design Nucleic Acids Res 2005 33 18 5861-5867 1258172 16224101 10.1093/nar/gki894
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.18
, pp. 5861-5867
-
-
Cheng, G.1
Qian, B.2
Samudrala, R.3
Baker, D.4
-
17
-
-
1842454912
-
Prediction of functional sites by analysis of sequence and structure conservation
-
10.1110/ps.03465504 15010543
-
Panchenko AR Kondrashov F Bryant S Prediction of functional sites by analysis of sequence and structure conservation Protein Sci 2004 13 4 884-892 10.1110/ps.03465504 15010543
-
(2004)
Protein Sci
, vol.13
, Issue.4
, pp. 884-892
-
-
Panchenko, A.R.1
Kondrashov, F.2
Bryant, S.3
-
18
-
-
0036681416
-
Scoring residue conservation
-
10.1002/prot.10146 12112692
-
Valdar WS Scoring residue conservation Proteins 2002 48 2 227-241 10.1002/prot.10146 12112692
-
(2002)
Proteins
, vol.48
, Issue.2
, pp. 227-241
-
-
Valdar, W.S.1
-
19
-
-
11344278220
-
Predicting protein functional sites with phylogenetic motifs
-
10.1002/prot.20321 15573397
-
La D Sutch B Livesay DR Predicting protein functional sites with phylogenetic motifs Proteins 2005 58 2 309-320 10.1002/prot.20321 15573397
-
(2005)
Proteins
, vol.58
, Issue.2
, pp. 309-320
-
-
La, D.1
Sutch, B.2
Livesay, D.R.3
-
20
-
-
33644845048
-
Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships
-
10.1002/prot.20830 16385560
-
Kim Y Subramaniam S Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships Proteins 2006 62 4 1115-1124 10.1002/prot.20830 16385560
-
(2006)
Proteins
, vol.62
, Issue.4
, pp. 1115-1124
-
-
Kim, Y.1
Subramaniam, S.2
-
21
-
-
0037404760
-
Motif-based construction of a functional map for mammalian olfactory receptors
-
10.1016/S0888-7543(03)00022-3 12706103
-
Liu AH Zhang X Stolovitzky GA Califano A Firestein SJ Motif-based construction of a functional map for mammalian olfactory receptors Genomics 2003 81 5 443-456 10.1016/S0888-7543(03)00022-3 12706103
-
(2003)
Genomics
, vol.81
, Issue.5
, pp. 443-456
-
-
Liu, A.H.1
Zhang, X.2
Stolovitzky, G.A.3
Califano, A.4
Firestein, S.J.5
-
22
-
-
30644470508
-
Predicting protein interaction sites from residue spatial sequence profile and evolution rate
-
10.1016/j.febslet.2005.11.081 16376878
-
Wang B Chen P Huang DS Li JJ Lok TM Lyu MR Predicting protein interaction sites from residue spatial sequence profile and evolution rate FEBS Lett 2006 580 2 380-384 10.1016/j.febslet.2005.11.081 16376878
-
(2006)
FEBS Lett
, vol.580
, Issue.2
, pp. 380-384
-
-
Wang, B.1
Chen, P.2
Huang, D.S.3
Li, J.J.4
Lok, T.M.5
Lyu, M.R.6
-
23
-
-
13244292990
-
A two-stage classifier for identification of protein-protein interface residues
-
10.1093/bioinformatics/bth920 15262822
-
Yan C Dobbs D Honavar V A two-stage classifier for identification of protein-protein interface residues Bioinformatics 2004 20 Suppl 1 I371-I378 10.1093/bioinformatics/bth920 15262822
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Yan, C.1
Dobbs, D.2
Honavar, V.3
-
24
-
-
19544390737
-
REVCOM: A robust Bayesian method for evolutionary rate estimation
-
10.1093/bioinformatics/bti347 15749694
-
Bordner AJ Abagyan R REVCOM: A robust Bayesian method for evolutionary rate estimation Bioinformatics 2005 21 10 2315-2321 10.1093/ bioinformatics/bti347 15749694
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2315-2321
-
-
Bordner, A.J.1
Abagyan, R.2
-
25
-
-
25444527443
-
Improved prediction of critical residues for protein function based on network and phylogenetic analyses
-
1208857 16124876 10.1186/1471-2105-6-213
-
Thibert B Bredesen DE Del Rio G Improved prediction of critical residues for protein function based on network and phylogenetic analyses BMC Bioinformatics 2005 6 1 213 1208857 16124876 10.1186/1471-2105-6-213
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.1
, pp. 213
-
-
Thibert, B.1
Bredesen, D.E.2
Del Rio, G.3
-
26
-
-
0035882570
-
Prediction of protein interaction sites from sequence profile and residue neighbor list
-
10.1002/prot.1099 11455607
-
Zhou HX Shan Y Prediction of protein interaction sites from sequence profile and residue neighbor list Proteins 2001 44 3 336-343 10.1002/ prot.1099 11455607
-
(2001)
Proteins
, vol.44
, Issue.3
, pp. 336-343
-
-
Zhou, H.X.1
Shan, Y.2
-
27
-
-
33750056673
-
ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility
-
10.1002/prot.21086 16972285
-
Meiler J Baker D ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility Proteins 2006 65 3 538-548 10.1002/prot.21086 16972285
-
(2006)
Proteins
, vol.65
, Issue.3
, pp. 538-548
-
-
Meiler, J.1
Baker, D.2
-
28
-
-
0036137713
-
Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in AutoDock
-
10.1002/prot.10028 11746701
-
Osterberg F Morris GM Sanner MF Olson AJ Goodsell DS Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in AutoDock Proteins 2002 46 34-40 10.1002/prot.10028 11746701
-
(2002)
Proteins
, vol.46
, pp. 34-40
-
-
Osterberg, F.1
Morris, G.M.2
Sanner, M.F.3
Olson, A.J.4
Goodsell, D.S.5
-
29
-
-
18744394070
-
Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites
-
10.1093/bioinformatics/bti315 15701681
-
Laurie AT Jackson RM Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites Bioinformatics 2005 21 9 1908-1916 10.1093/bioinformatics/bti315 15701681
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1908-1916
-
-
Laurie, A.T.1
Jackson, R.M.2
-
30
-
-
17144383951
-
A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes
-
10.1021/jm049314d 15801826
-
Zhang C Liu S Zhu Q Zhou Y A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes J Med Chem 2005 48 7 2325-2335 10.1021/jm049314d 15801826
-
(2005)
J Med Chem
, vol.48
, Issue.7
, pp. 2325-2335
-
-
Zhang, C.1
Liu, S.2
Zhu, Q.3
Zhou, Y.4
-
31
-
-
14744305761
-
Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families
-
10.1016/j.jmb.2005.01.044 15755451
-
Torrance JW Bartlett GJ Porter CT Thornton JM Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families J Mol Biol 2005 347 3 565-581 10.1016/ j.jmb.2005.01.044 15755451
-
(2005)
J Mol Biol
, vol.347
, Issue.3
, pp. 565-581
-
-
Torrance, J.W.1
Bartlett, G.J.2
Porter, C.T.3
Thornton, J.M.4
-
35
-
-
1842526090
-
ProMate: A structure based prediction program to identify the location of protein-protein binding sites
-
10.1016/j.jmb.2004.02.040 15050833
-
Neuvirth H Raz R Schreiber G ProMate: A structure based prediction program to identify the location of protein-protein binding sites J Mol Biol 2004 338 1 181-199 10.1016/j.jmb.2004.02.040 15050833
-
(2004)
J Mol Biol
, vol.338
, Issue.1
, pp. 181-199
-
-
Neuvirth, H.1
Raz, R.2
Schreiber, G.3
-
36
-
-
19544369864
-
An evolution based classifier for prediction of protein interfaces without using protein structures
-
10.1093/bioinformatics/bti340 15728113
-
Res I Mihalek I Lichtarge O An evolution based classifier for prediction of protein interfaces without using protein structures Bioinformatics 2005 21 10 2496-2501 10.1093/bioinformatics/bti340 15728113
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2496-2501
-
-
Res, I.1
Mihalek, I.2
Lichtarge, O.3
-
38
-
-
33747150197
-
Protein binding site prediction using an empirical scoring function
-
1540721
-
Liang S Zhang C Liu S Zhou Y Protein binding site prediction using an empirical scoring function Nucleic Acids Res 2006 34 13 3698-3707 1540721 16893954 10.1093/nar/gkl454
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3698-3707
-
-
Liang, S.1
Zhang, C.2
Liu, S.3
Zhou, Y.4
-
39
-
-
33749336161
-
Localization of binding sites in protein structures by optimization of a composite scoring function
-
16963645
-
Rossi A Marti-Renom MA Sali A Localization of binding sites in protein structures by optimization of a composite scoring function Protein Sci 2006 16963645
-
(2006)
Protein Sci
-
-
Rossi, A.1
Marti-Renom, M.A.2
Sali, A.3
-
40
-
-
33749615646
-
A machine learning strategy to identify candidate binding sites in human protein-coding sequence
-
1592515 17002805 10.1186/1471-2105-7-419
-
Down T Leong B Hubbard TJ A machine learning strategy to identify candidate binding sites in human protein-coding sequence BMC Bioinformatics 2006 7 419 1592515 17002805 10.1186/1471-2105-7-419
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 419
-
-
Down, T.1
Leong, B.2
Hubbard, T.J.3
-
41
-
-
33744803962
-
Predicting calcium-binding sites in proteins - A graph theory and geometry approach
-
10.1002/prot.20973 16617426
-
Deng H Chen G Yang W Yang JJ Predicting calcium-binding sites in proteins - a graph theory and geometry approach Proteins 2006 64 1 34 42 10.1002/prot.20973 16617426
-
(2006)
Proteins
, vol.64
, Issue.1
, pp. 34-42
-
-
Deng, H.1
Chen, G.2
Yang, W.3
Yang, J.J.4
-
42
-
-
24344484686
-
Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data
-
10.1002/prot.20514 16080151
-
Chen H Zhou HX Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data Proteins 2005 61 1 21-35 10.1002/prot.20514 16080151
-
(2005)
Proteins
, vol.61
, Issue.1
, pp. 21-35
-
-
Chen, H.1
Zhou, H.X.2
-
43
-
-
15244358006
-
Support vector machines for learning to identify the critical positions of a protein
-
10.1016/j.jtbi.2004.11.037 15784270
-
Dubey A Realff MJ Lee JH Bommarius AS Support vector machines for learning to identify the critical positions of a protein J Theor Biol 2005 234 3 351-361 10.1016/j.jtbi.2004.11.037 15784270
-
(2005)
J Theor Biol
, vol.234
, Issue.3
, pp. 351-361
-
-
Dubey, A.1
Realff, M.J.2
Lee, J.H.3
Bommarius, A.S.4
-
44
-
-
1842765629
-
Prediction of protein-protein interaction sites using support vector machines
-
10.1093/protein/gzh020 15047913
-
Koike A Takagi T Prediction of protein-protein interaction sites using support vector machines Protein Eng Des Sel 2004 17 2 165-173 10.1093/ protein/gzh020 15047913
-
(2004)
Protein Eng Des Sel
, vol.17
, Issue.2
, pp. 165-173
-
-
Koike, A.1
Takagi, T.2
-
45
-
-
34047104592
-
Protein-protein interaction site prediction based on conditional random fields
-
To be published
-
Li MH Lin L Wang XL Liu T Protein-protein interaction site prediction based on conditional random fields Bioinformatics 2007 To be published
-
(2007)
Bioinformatics
-
-
Li, M.H.1
Lin, L.2
Wang, X.L.3
Liu, T.4
-
46
-
-
0037229456
-
Analysing six types of protein-protein interfaces
-
10.1016/S0022-2836(02)01223-8 12488102
-
Ofran Y Rost B Analysing six types of protein-protein interfaces J Mol Biol 2003 325 2 377 387 10.1016/S0022-2836(02)01223-8 12488102
-
(2003)
J Mol Biol
, vol.325
, Issue.2
, pp. 377-387
-
-
Ofran, Y.1
Rost, B.2
-
47
-
-
0030801002
-
Gapped Blast and Psi-blast: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang JH Zhang Z Miller W Lipman DJ Gapped Blast and Psi-blast: A new generation of protein database search programs Nucleic Acids Research 1997 25 17 3389-3402 146917 9254694 10.1093/nar/25.17.3389
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
48
-
-
33645879534
-
Domain boundary prediction based on profile domain linker propensity index
-
16531120
-
Dong Q Wang XL Lin L Xu Z Domain boundary prediction based on profile domain linker propensity index Comput Biol Chem 2006 30 2 127-133 16531120
-
(2006)
Comput Biol Chem
, vol.30
, Issue.2
, pp. 127-133
-
-
Dong, Q.1
Wang, X.L.2
Lin, L.3
Xu, Z.4
-
49
-
-
33747135021
-
Novel knowledge-based mean force potential at the profile level
-
1534065 16803615 10.1186/1471-2105-7-324
-
Dong Qw Wang XL Lin L Novel knowledge-based mean force potential at the profile level BMC Bioinformatics 2006 7 324 1534065 16803615 10.1186/ 1471-2105-7-324
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 324
-
-
Dong, Q.W.1
Wang, X.L.2
Lin, L.3
-
51
-
-
0038356582
-
Predicted protein-protein interaction sites from local sequence information
-
10.1016/S0014-5793(03)00456-3 12782323
-
Ofran Y Rost B Predicted protein-protein interaction sites from local sequence information FEBS Lett 2003 544 1-3 236 239 10.1016/ S0014-5793(03)00456-3 12782323
-
(2003)
FEBS Lett
, vol.544
, Issue.1-3
, pp. 236-239
-
-
Ofran, Y.1
Rost, B.2
-
52
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
10.1002/prot.340090107 2017436
-
Sander C Schneider R Database of homology-derived protein structures and the structural meaning of sequence alignment Proteins 1991 9 1 56-68 10.1002/prot.340090107 2017436
-
(1991)
Proteins
, vol.9
, Issue.1
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
53
-
-
0029935769
-
Evolutionary conservation of RecA genes in relation to protein structure and function
-
177882 8606161
-
Karlin S Brocchieri L Evolutionary conservation of RecA genes in relation to protein structure and function J Bacteriol 1996 178 7 1881-1894 177882 8606161
-
(1996)
J Bacteriol
, vol.178
, Issue.7
, pp. 1881-1894
-
-
Karlin, S.1
Brocchieri, L.2
-
54
-
-
0035178383
-
Protein-protein interfaces: Analysis of amino acid conservation in homodimers
-
10.1002/1097-0134(20010101)42:1<108::AID-PROT110>3.0.CO;2-O 11093265
-
Valdar WS Thornton JM Protein-protein interfaces: Analysis of amino acid conservation in homodimers Proteins 2001 42 1 108-124 10.1002/ 1097-0134(20010101)42:1<108::AID-PROT110>3.0.CO;2-O 11093265
-
(2001)
Proteins
, vol.42
, Issue.1
, pp. 108-124
-
-
Valdar, W.S.1
Thornton, J.M.2
-
56
-
-
23044487169
-
Statistical analysis and prediction of protein-protein interfaces
-
10.1002/prot.20433 15906321
-
Bordner AJ Abagyan R Statistical analysis and prediction of protein-protein interfaces Proteins 2005 60 3 353-366 10.1002/prot.20433 15906321
-
(2005)
Proteins
, vol.60
, Issue.3
, pp. 353-366
-
-
Bordner, A.J.1
Abagyan, R.2
-
57
-
-
0032169688
-
PQS: A protein quaternary structure file server
-
10.1016/S0968-0004(98)01253-5 9787643
-
Henrick K Thornton JM PQS: A protein quaternary structure file server Trends Biochem Sci 1998 23 9 358-361 10.1016/S0968-0004(98)01253-5 9787643
-
(1998)
Trends Biochem Sci
, vol.23
, Issue.9
, pp. 358-361
-
-
Henrick, K.1
Thornton, J.M.2
-
58
-
-
0041312697
-
Diversity of protein-protein interactions
-
165629 12853464 10.1093/emboj/cdg359
-
Nooren IM Thornton JM Diversity of protein-protein interactions Embo J 2003 22 14 3486-3492 165629 12853464 10.1093/emboj/cdg359
-
(2003)
Embo J
, vol.22
, Issue.14
, pp. 3486-3492
-
-
Nooren, I.M.1
Thornton, J.M.2
-
59
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
1347523 16381842 10.1093/nar/gkj161
-
Wu CH Apweiler R Bairoch A Natale DA Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R The Universal Protein Resource (UniProt): An expanding universe of protein information Nucleic Acids Res 2006 34 Database D187-191 1347523 16381842 10.1093/nar/gkj161
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
Boeckmann, B.6
Ferro, S.7
Gasteiger, E.8
Huang, H.9
Lopez, R.10
-
60
-
-
0036088133
-
DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
-
99070 11752321 10.1093/nar/30.1.303
-
Xenarios I Salwinski L Duan XJ Higney P Kim SM Eisenberg D DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions Nucleic Acids Res 2002 30 1 303-305 99070 11752321 10.1093/nar/30.1.303
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.M.5
Eisenberg, D.6
-
61
-
-
0020997912
-
Dictionary of Secondary structure in Proteins: Pattern Recognition of Hydrogenbonded and Geometrical Features
-
10.1002/bip.360221211 6667333
-
Kabsch W Sander C Dictionary of Secondary structure in Proteins: Pattern Recognition of Hydrogenbonded and Geometrical Features Biopolymers 1983 22 12 2577-2637 10.1002/bip.360221211 6667333
-
(1983)
Biopolymers
, vol.22
, Issue.12
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
63
-
-
0003710380
-
LIBSVM: A library for support vector machines
-
Chang CC Lin CJ LIBSVM: A library for support vector machines 2001 http://www.csie.ntu.edu.tw/~cjlin/libsvm
-
(2001)
-
-
Chang, C.C.1
Lin, C.J.2
|