-
1
-
-
34548083742
-
Whole-genome analysis of sporadic amyotrophic lateral sclerosis
-
Dunckley T, Huentelman MJ, Craig DW, Pearson JV, Szelinger S, Joshipura K, Halperin RF, Stamper C, Jensen KR, Letizia D, Hesterlee SE, Pestronk A, Levine T, Bertorini T, Graves MC, Mozaffar T, Jackson CE, Bosch P, McVey A, Dick A, Barohn R, Lomen-Hoerth C, Rosenfeld J, O'Connor DT, Zhang K, Crook R, Ryberg H, Hutton M, Katz J, Simpson EP, Mitsumoto H, Bowser R, Miller RG, Appel SH, Stephan DA. Whole-genome analysis of sporadic amyotrophic lateral sclerosis. N Engl J Med 2007; 357: 775-788.
-
(2007)
N Engl J Med
, vol.357
, pp. 775-788
-
-
Dunckley, T.1
Huentelman, M.J.2
Craig, D.W.3
Pearson, J.V.4
Szelinger, S.5
Joshipura, K.6
Halperin, R.F.7
Stamper, C.8
Jensen, K.R.9
Letizia, D.10
Hesterlee, S.E.11
Pestronk, A.12
Levine, T.13
Bertorini, T.14
Graves, M.C.15
Mozaffar, T.16
Jackson, C.E.17
Bosch, P.18
McVey, A.19
Dick, A.20
Barohn, R.21
Lomen-Hoerth, C.22
Rosenfeld, J.23
O'Connor, D.T.24
Zhang, K.25
Crook, R.26
Ryberg, H.27
Hutton, M.28
Katz, J.29
Simpson, E.P.30
Mitsumoto, H.31
Bowser, R.32
Miller, R.G.33
Appel, S.H.34
Stephan, D.A.35
more..
-
2
-
-
22244479388
-
Copper-zinc superoxide dismutase and amyotrophic lateral sclerosis
-
Valentine JS, Doucette PA, Potter SZ. Copper-zinc superoxide dismutase and amyotrophic lateral sclerosis. Annu Rev Biochem 2005; 74: 563-593.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 563-593
-
-
Valentine, J.S.1
Doucette, P.A.2
Potter, S.Z.3
-
3
-
-
3943102116
-
Unraveling the mechanisms involved in motor neuron degeneration in als
-
Bruijn LI, Miller TM, Cleveland DW. Unraveling the mechanisms involved in motor neuron degeneration in als. Annu Rev Neurosci 2004; 27: 723-749.
-
(2004)
Annu Rev Neurosci
, vol.27
, pp. 723-749
-
-
Bruijn, L.I.1
Miller, T.M.2
Cleveland, D.W.3
-
4
-
-
0032815965
-
Variation in the biochemical/biophysical properties of mutant superoxide dismutase 1 enzymes and the rate of disease progression in familial amyotrophic lateral sclerosis kindreds
-
Ratovitski T, Corson LB, Strain J, Wong P, Cleveland DW, Culotta VC, Borchelt DR. Variation in the biochemical/biophysical properties of mutant superoxide dismutase 1 enzymes and the rate of disease progression in familial amyotrophic lateral sclerosis kindreds. Hum Mol Genet 1999; 8: 1451-1460.
-
(1999)
Hum Mol Genet
, vol.8
, pp. 1451-1460
-
-
Ratovitski, T.1
Corson, L.B.2
Strain, J.3
Wong, P.4
Cleveland, D.W.5
Culotta, V.C.6
Borchelt, D.R.7
-
5
-
-
0242524455
-
Copper-binding-site-null sod1 causes als in transgenic mice: aggregates of non-native sod1 delineate a common feature
-
Wang J, Slunt H, Gonzales V, Fromholt D, Coonfield M, Copeland NG, Jenkins NA, Borchelt DR. Copper-binding-site-null sod1 causes als in transgenic mice: aggregates of non-native sod1 delineate a common feature. Hum Mol Genet 2003; 12: 2753-2764.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 2753-2764
-
-
Wang, J.1
Slunt, H.2
Gonzales, V.3
Fromholt, D.4
Coonfield, M.5
Copeland, N.G.6
Jenkins, N.A.7
Borchelt, D.R.8
-
6
-
-
14844361966
-
Small-molecule-mediated stabilization of familial amyotrophic lateral sclerosis-linked superoxide dismutase mutants against unfolding and aggregation
-
Ray SS, Nowak RJ, Brown RH, Lansbury PT. Small-molecule-mediated stabilization of familial amyotrophic lateral sclerosis-linked superoxide dismutase mutants against unfolding and aggregation. Proc Nat Acad Sci USA 2005; 102: 3639-3644.
-
(2005)
Proc Nat Acad Sci USA
, vol.102
, pp. 3639-3644
-
-
Ray, S.S.1
Nowak, R.J.2
Brown, R.H.3
Lansbury, P.T.4
-
7
-
-
33846678063
-
How do als-associated mutations in superoxide dismutase 1 promote aggregation of the protein?
-
Shaw BF, Valentine JS. How do als-associated mutations in superoxide dismutase 1 promote aggregation of the protein? Trends Biochem Sci 2007; 32: 78-85.
-
(2007)
Trends Biochem Sci
, vol.32
, pp. 78-85
-
-
Shaw, B.F.1
Valentine, J.S.2
-
8
-
-
62549084794
-
Insulin-like growth factor-i for the treatment of amyotrophic lateral sclerosis
-
Sakowski SA, Schuyler AD, Feldman EL. Insulin-like growth factor-i for the treatment of amyotrophic lateral sclerosis. Amyotroph Lateral Scler 2009; 10: 63-73.
-
(2009)
Amyotroph Lateral Scler
, vol.10
, pp. 63-73
-
-
Sakowski, S.A.1
Schuyler, A.D.2
Feldman, E.L.3
-
9
-
-
23044431627
-
Destabilization of apoprotein is insufficient to explain cu,zn-superoxide dismutase-linked als pathogenesis
-
Rodriguez JA, Shaw BF, Durazo A, Sohn SH, Doucette PA, Nersissian AM, Faull KF, Eggers DK, Tiwari A, Hayward LJ, Valentine JS. Destabilization of apoprotein is insufficient to explain cu, zn-superoxide dismutase-linked als pathogenesis. Proc Nat Acad Sci USA 2005; 102: 10516-10521.
-
(2005)
Proc Nat Acad Sci USA
, vol.102
, pp. 10516-10521
-
-
Rodriguez, J.A.1
Shaw, B.F.2
Durazo, A.3
Sohn, S.H.4
Doucette, P.A.5
Nersissian, A.M.6
Faull, K.F.7
Eggers, D.K.8
Tiwari, A.9
Hayward, L.J.10
Valentine, J.S.11
-
10
-
-
0033642945
-
Structural stability of binding sites: consequences for binding affinity and allosteric effects
-
Luque I, Freire E. Structural stability of binding sites: consequences for binding affinity and allosteric effects. Prot: Struc Funct Genet 2000; Suppl 4: 63-71.
-
(2000)
Prot: Struc Funct Genet
, Issue.SUPPL. 4
, pp. 63-71
-
-
Luque, I.1
Freire, E.2
-
11
-
-
0346220393
-
The role of dynamics in allosteric regulation
-
Kern D, Zuiderweg ERP. The role of dynamics in allosteric regulation. Curr Opin Struct Biol 2003; 13: 748-757.
-
(2003)
Curr Opin Struct Biol
, vol.13
, pp. 748-757
-
-
Kern, D.1
Zuiderweg, E.R.P.2
-
14
-
-
38049089909
-
A computational investigation of allostery in the catabolite activator protein
-
Li L, Uversky VN, Dunker AK, Meroueh SO. A computational investigation of allostery in the catabolite activator protein. J Am Chem Soc 2007; 129: 15668-15676.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 15668-15676
-
-
Li, L.1
Uversky, V.N.2
Dunker, A.K.3
Meroueh, S.O.4
-
15
-
-
33749055796
-
Markov propagation of allosteric effects in biomolecular systems: application to groel-groes
-
Chennubhotla C, Bahar I. Markov propagation of allosteric effects in biomolecular systems: application to groel-groes. Mol Syst Biol 2006; 2: 36.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 36
-
-
Chennubhotla, C.1
Bahar, I.2
-
16
-
-
33947419241
-
Local motions in a benchmark of allosteric proteins
-
Daily MD, Gray JJ. Local motions in a benchmark of allosteric proteins. Prot: Struct Funct Bioinform 2007; 67: 385-399.
-
(2007)
Prot: Struct Funct Bioinform
, vol.67
, pp. 385-399
-
-
Daily, M.D.1
Gray, J.J.2
-
17
-
-
61449101487
-
Allosteric communication occurs via networks of tertiary and quaternary motions in proteins
-
Daily MD, Gray JJ. Allosteric communication occurs via networks of tertiary and quaternary motions in proteins. PLoS Computat Biol 2009; 5: e1000293.
-
(2009)
PLoS Computat Biol
, vol.5
-
-
Daily, M.D.1
Gray, J.J.2
-
18
-
-
67650065004
-
Computational methods for predicting sites of functionally important dynamics
-
Schuyler AD, Carlson HA, Feldman EL. Computational methods for predicting sites of functionally important dynamics. J Phys Chem B 2009; 113: 6613-6622.
-
(2009)
J Phys Chem B
, vol.113
, pp. 6613-6622
-
-
Schuyler, A.D.1
Carlson, H.A.2
Feldman, E.L.3
-
19
-
-
0031581852
-
Molecular docking to ensembles of protein structures
-
Knegtel RMA, Kuntz ID, Oshiro CM. Molecular docking to ensembles of protein structures. J Mol Biol 1997; 266: 424-440.
-
(1997)
J Mol Biol
, vol.266
, pp. 424-440
-
-
Knegtel, R.M.A.1
Kuntz, I.D.2
Oshiro, C.M.3
-
20
-
-
0033974667
-
Accommodating protein flexibility in computational drug design
-
Carlson HA, McCammon JA. Accommodating protein flexibility in computational drug design. Mol Pharmacol 2000; 57: 213.
-
(2000)
Mol Pharmacol
, vol.57
, pp. 213
-
-
Carlson, H.A.1
McCammon, J.A.2
-
21
-
-
0036147568
-
Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations
-
Ma B, Shatsky M, Wolfson HJ, Nussinov R. Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations. Prot Sci 2002; 11: 184-197.
-
(2002)
Prot Sci
, vol.11
, pp. 184-197
-
-
Ma, B.1
Shatsky, M.2
Wolfson, H.J.3
Nussinov, R.4
-
22
-
-
0037666888
-
Implications of protein flexibility for drug discovery
-
Teague SJ. Implications of protein flexibility for drug discovery. Nat Rev Drug Discov 2003; 2: 527-541.
-
(2003)
Nat Rev Drug Discov
, vol.2
, pp. 527-541
-
-
Teague, S.J.1
-
23
-
-
6344245774
-
Incorporating protein flexibility in structure-based drug discovery: using HIV-1 protease as a test case
-
Meagher KL, Carlson HA. Incorporating protein flexibility in structure-based drug discovery: using HIV-1 protease as a test case. J Am Chem Soc 2004; 126: 13276-13281.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 13276-13281
-
-
Meagher, K.L.1
Carlson, H.A.2
-
24
-
-
35548942306
-
Small molecule inhibitors of the MDM2-p53 interaction discovered by ensemble-based receptor models
-
Bowman AL, Nikolovska-Coleska Z, Zhong H, Wang S, Carlson HA. Small molecule inhibitors of the MDM2-p53 interaction discovered by ensemble-based receptor models. J Am Chem Soc 2007; 129: 12809-12814.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 12809-12814
-
-
Bowman, A.L.1
Nikolovska-Coleska, Z.2
Zhong, H.3
Wang, S.4
Carlson, H.A.5
-
25
-
-
52049093435
-
A poke in the eye: inhibiting HIV-1 protease through its flap-recognition pocket
-
Damm KL, Ung PMU, Quintero JJ, Gestwicki JE, Carlson HA. A poke in the eye: inhibiting HIV-1 protease through its flap-recognition pocket. Biopolymers 2008; 89: 643-652.
-
(2008)
Biopolymers
, vol.89
, pp. 643-652
-
-
Damm, K.L.1
Ung, P.M.U.2
Quintero, J.J.3
Gestwicki, J.E.4
Carlson, H.A.5
-
26
-
-
18744387720
-
Reaction coordinates and rates from transition paths
-
Best RB, Hummer G. Reaction coordinates and rates from transition paths. Proc Nat Acad Sci USA 2005; 102: 6732-6737.
-
(2005)
Proc Nat Acad Sci USA
, vol.102
, pp. 6732-6737
-
-
Best, R.B.1
Hummer, G.2
-
27
-
-
34547648709
-
Theoretical studies of transition states by the multioverlap molecular dynamics methods
-
Itoh SG, Okamoto Y. Theoretical studies of transition states by the multioverlap molecular dynamics methods. J Chem Phys 2006; 124: 104103.
-
(2006)
J Chem Phys
, vol.124
, pp. 104103
-
-
Itoh, S.G.1
Okamoto, Y.2
-
28
-
-
59849093621
-
Iterative cluster-NMA: a tool for generating conformational transitions in proteins
-
Schuyler AD, Jernigan RL, Qasba PK, Ramakrishnan R, Chirikjian GS. Iterative cluster-NMA: a tool for generating conformational transitions in proteins. Prot: Struct Funct Bioinform 2009; 74: 760-776.
-
(2009)
Prot: Struct Funct Bioinform
, vol.74
, pp. 760-776
-
-
Schuyler, A.D.1
Jernigan, R.L.2
Qasba, P.K.3
Ramakrishnan, R.4
Chirikjian, G.S.5
-
29
-
-
33846189408
-
Interpreting correlated motions using normal mode analysis
-
Van Wynsberghe AW, Cui Q. Interpreting correlated motions using normal mode analysis. Structure 2006; 14: 1647-1653.
-
(2006)
Structure
, vol.14
, pp. 1647-1653
-
-
Van Wynsberghe, A.W.1
Cui, Q.2
-
30
-
-
33646145523
-
Can conformational change be described by only a few normal modes?
-
Petrone P, Pande VS. Can conformational change be described by only a few normal modes? Biophys J 2006; 90: 1583-1593.
-
(2006)
Biophys J
, vol.90
, pp. 1583-1593
-
-
Petrone, P.1
Pande, V.S.2
-
31
-
-
33646742004
-
Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations
-
Zheng W, Brooks BR, Thirumalai D. Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations. Proc Nat Acad Sci USA 2006; 103: 7664-7669.
-
(2006)
Proc Nat Acad Sci USA
, vol.103
, pp. 7664-7669
-
-
Zheng, W.1
Brooks, B.R.2
Thirumalai, D.3
-
32
-
-
0033954256
-
The protein data bank
-
Available at:.
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The protein data bank. Nucleic Acids Res 2000; 28: 235-242. Available at:.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
33
-
-
0003845223
-
The PyMOL molecular graphics system
-
California, DeLano Scientific;, Available at:.
-
DeLano WL. The PyMOL molecular graphics system. California: DeLano Scientific; 2007. Available at:.
-
(2007)
-
-
DeLano, W.L.1
-
34
-
-
0037427449
-
The structure of holo and metal-deficient wild-type human cu, zn superoxide dismutase and its relevance to familial amyotrophic lateral sclerosis
-
Strange RW, Antonyuk S, Hough MA, Doucette PA, Rodriguez JA, John Hart P, Hayward LJ, Valentine JS, Samar Hasnain S. The structure of holo and metal-deficient wild-type human cu, zn superoxide dismutase and its relevance to familial amyotrophic lateral sclerosis. J Mol Biol 2003; 328: 877-891.
-
(2003)
J Mol Biol
, vol.328
, pp. 877-891
-
-
Strange, R.W.1
Antonyuk, S.2
Hough, M.A.3
Doucette, P.A.4
Rodriguez, J.A.5
John Hart, P.6
Hayward, L.J.7
Valentine, J.S.8
Samar Hasnain, S.9
-
35
-
-
11144357460
-
Dimer destabilization in superoxide dismutase may result in disease-causing properties: structures of motor neuron disease mutants
-
Hough MA, Günter Grossmann J, Antonyuk SV, Strange RW, Doucette PA, Rodriguez JA, Whitson LJ, John Hart P, Hayward LJ, Valentine JS, Samar Hasnain S. Dimer destabilization in superoxide dismutase may result in disease-causing properties: structures of motor neuron disease mutants. Proc Nat Acad Sci USA 2004; 101: 5976-5981.
-
(2004)
Proc Nat Acad Sci USA
, vol.101
, pp. 5976-5981
-
-
Hough, M.A.1
Günter Grossmann, J.2
Antonyuk, S.V.3
Strange, R.W.4
Doucette, P.A.5
Rodriguez, J.A.6
Whitson, L.J.7
John Hart, P.8
Hayward, L.J.9
Valentine, J.S.10
Samar Hasnain, S.11
-
36
-
-
0031911637
-
Subunit asymmetry in the three-dimensional structure of a human cuznsod mutant found in familial amyotrophic lateral sclerosis
-
Hart PJ, Liu H, Pellegrini M, Nersissian AM, Gralla EB, Valentine JS, Eisenberg D. Subunit asymmetry in the three-dimensional structure of a human cuznsod mutant found in familial amyotrophic lateral sclerosis. Protein Sci 1998; 7: 545-555.
-
(1998)
Protein Sci
, vol.7
, pp. 545-555
-
-
Hart, P.J.1
Liu, H.2
Pellegrini, M.3
Nersissian, A.M.4
Gralla, E.B.5
Valentine, J.S.6
Eisenberg, D.7
-
37
-
-
0038442784
-
Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS
-
Elam JS, Taylor AB, Strange R, Antonyuk S, Doucette PA, Rodriguez JA, Samar Hasnain S, Hayward LJ, Valentine TO, Yeates JS, John Hart P. Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS. Nat Struct Biol 2003; 10: 461-467.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 461-467
-
-
Elam, J.S.1
Taylor, A.B.2
Strange, R.3
Antonyuk, S.4
Doucette, P.A.5
Rodriguez, J.A.6
Samar Hasnain, S.7
Hayward, L.J.8
Valentine, T.O.9
Yeates, J.S.10
John Hart, P.11
-
38
-
-
78650762232
-
-
NCBI single nucleotide polymorphism database. Available at: .
-
NCBI single nucleotide polymorphism database. Available at: .
-
-
-
-
39
-
-
0016610491
-
Computer simulation of protein folding
-
Levitt M, Warshel A. Computer simulation of protein folding. Nature 1975; 253: 694-698.
-
(1975)
Nature
, vol.253
, pp. 694-698
-
-
Levitt, M.1
Warshel, A.2
-
40
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion MM. Large amplitude elastic motions in proteins from a single-parameter, atomic analysis. Phys Rev Lett 1996; 77: 1905-1908.
-
(1996)
Phys Rev Lett
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
41
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan AR, Durell SR, Jernigan RL, Demirel MC, Keskin O, Bahar I. Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys J 2001; 80: 505-515.
-
(2001)
Biophys J
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
Bahar, I.6
-
43
-
-
24944492922
-
Efficient determination of low-frequency normal modes of large protein structures by cluster-NMA
-
Schuyler AD, Chirikjian GS. Efficient determination of low-frequency normal modes of large protein structures by cluster-NMA. J Mol Graph Model 2005; 24: 46-58.
-
(2005)
J Mol Graph Model
, vol.24
, pp. 46-58
-
-
Schuyler, A.D.1
Chirikjian, G.S.2
|