-
1
-
-
0033593306
-
Molecular bases for circadian clocks
-
Dunlap JC (1999) Molecular bases for circadian clocks. Cell 96: 271-290.
-
(1999)
Cell
, vol.96
, pp. 271-290
-
-
Dunlap, J.C.1
-
3
-
-
0032698089
-
Circadian programs in cyanobacteria: Adaptiveness and mechanism
-
Johnson CH, Golden SS (1999) Circadian programs in cyanobacteria: adaptiveness and mechanism. Annu Rev Microbiol 53: 389-409.
-
(1999)
Annu Rev Microbiol
, vol.53
, pp. 389-409
-
-
Johnson, C.H.1
Golden, S.S.2
-
4
-
-
48249084897
-
A cyanobacterial circadian clock based on the Kai oscillator
-
Kondo T (2007) A cyanobacterial circadian clock based on the Kai oscillator. Cold Spring Harb Symp Quant Biol 72: 47-55.
-
(2007)
Cold Spring Harb Symp Quant Biol
, vol.72
, pp. 47-55
-
-
Kondo, T.1
-
5
-
-
4544359281
-
The Neurospora circadian system
-
Dunlap JC, Loros JJ (2004) The Neurospora circadian system. J Biol Rhythms 19: 414-424.
-
(2004)
J Biol Rhythms
, vol.19
, pp. 414-424
-
-
Dunlap, J.C.1
Loros, J.J.2
-
6
-
-
41049088736
-
Interlocked feedback loops of the circadian clock of Neurospora crassa
-
Brunner M, Kaldi K (2008) Interlocked feedback loops of the circadian clock of Neurospora crassa. Mol Microbiol 68: 255-262.
-
(2008)
Mol Microbiol
, vol.68
, pp. 255-262
-
-
Brunner, M.1
Kaldi, K.2
-
7
-
-
34247161251
-
The Neurospora crassa circadian clock
-
Heintzen C, Liu Y (2007) The Neurospora crassa circadian clock. Adv Genet 58: 25-66.
-
(2007)
Adv Genet
, vol.58
, pp. 25-66
-
-
Heintzen, C.1
Liu, Y.2
-
8
-
-
0033595790
-
Interlocked feedback loops within the Drosophila circadian oscillator
-
Glossop NRJ, Lyons LC, Hardin PE (1999) Interlocked feedback loops within the Drosophila circadian oscillator. Science 286: 766-768.
-
(1999)
Science
, vol.286
, pp. 766-768
-
-
Glossop, N.R.J.1
Lyons, L.C.2
Hardin, P.E.3
-
9
-
-
0035927611
-
Robust oscillations within the interlocked feedback model of Drosophila circadian rhythm
-
Ueda HR, Hagiwara M, Kitano H (2001) Robust oscillations within the interlocked feedback model of Drosophila circadian rhythm. J Theor Biol 210:401-406.
-
(2001)
J Theor Biol
, vol.210
, pp. 401-406
-
-
Ueda, H.R.1
Hagiwara, M.2
Kitano, H.3
-
10
-
-
47249110232
-
The in(put)s and out(put)s of the Drosophila circadian clock
-
Boothroyd CE, Young MW (2008) The in(put)s and out(put)s of the Drosophila circadian clock. Ann N Y Acad Sci 1129: 350-357.
-
(2008)
Ann N Y Acad Sci
, vol.1129
, pp. 350-357
-
-
Boothroyd, C.E.1
Young, M.W.2
-
11
-
-
57649185741
-
A plastic clock: How circadian rhythms respond to environmental cues in Drosophila
-
Dubruille R, Emery P (2008) A plastic clock: how circadian rhythms respond to environmental cues in Drosophila. Mol Neurobiol 38: 129-145.
-
(2008)
Mol Neurobiol
, vol.38
, pp. 129-145
-
-
Dubruille, R.1
Emery, P.2
-
12
-
-
0035800467
-
Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock
-
AlabadíD, Oyama T, Yanovsky MJ, Harmon FJ, Ma ́s P, et al. (2001) Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293: 880-883.
-
(2001)
Science
, vol.293
, pp. 880-883
-
-
Alabadí, D.1
Oyama, T.2
Yanovsky, M.J.3
Harmon, F.J.4
Más, P.5
-
13
-
-
33745456764
-
Plant circadian rhythms
-
McClung CR (2006) Plant circadian rhythms. Plant Cell 18: 792-803.
-
(2006)
Plant Cell
, vol.18
, pp. 792-803
-
-
McClung, C.R.1
-
14
-
-
44649104433
-
Circadian clock function in Arabidopsis thaliana: Time beyond transcription
-
Mas P (2008) Circadian clock function in Arabidopsis thaliana: time beyond transcription. Trends Cell Biol 18: 273-281.
-
(2008)
Trends Cell Biol
, vol.18
, pp. 273-281
-
-
Mas, P.1
-
16
-
-
33749031807
-
Molecular components of the mammalian circadian clock
-
Ko CH, Takahashi JS (2006) Molecular components of the mammalian circadian clock. Hum Mol Genet 15: 271-277.
-
(2006)
Hum Mol Genet
, vol.15
, pp. 271-277
-
-
Ko, C.H.1
Takahashi, J.S.2
-
18
-
-
45549092930
-
Modeling the circadian clock: From molecular mechanism to physiological disorders
-
Leloup JC, Goldbeter A (2008) Modeling the circadian clock: from molecular mechanism to physiological disorders. Bioessays 30: 590-600.
-
(2008)
Bioessays
, vol.30
, pp. 590-600
-
-
Leloup, J.C.1
Goldbeter, A.2
-
19
-
-
0344736694
-
A detailed predictive model of the mammalian circadian clock
-
Forger DB, Peskin CS (2003) A detailed predictive model of the mammalian circadian clock. Proc Natl Acad Sci U S A 100: 14806-14811.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 14806-14811
-
-
Forger, D.B.1
Peskin, C.S.2
-
20
-
-
15244359622
-
Modelling genetic networkswith noisy and varied experimental data: The circadian clock in Arabidopsis thaliana
-
Locke JCW, Millar AJ, Turner MS (2005) Modelling genetic networkswith noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J Theor Biol 234: 383-393.
-
(2005)
J Theor Biol
, vol.234
, pp. 383-393
-
-
Locke, J.C.W.1
Millar, A.J.2
Turner, M.S.3
-
21
-
-
29544448913
-
Extension of a genetic network model by iterative experimentation and mathematical analysis
-
2005.0013
-
Locke JCW, Southern MM, Kozma-Bognar L, Hibberd V, Brown PE, et al. (2005) Extension of a genetic network model by iterative experimentation and mathematical analysis. Mol Syst Biol 1: 2005.0013.
-
(2005)
Mol Syst Biol
, vol.1
-
-
Locke, J.C.W.1
Southern, M.M.2
Kozma-Bognar, L.3
Hibberd, V.4
Brown, P.E.5
-
22
-
-
11844289579
-
Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock
-
Farre EM HS, Harmon FG, Yanovsky MJ, Kay SA (2005) Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Current Biology 15: 47-54.
-
(2005)
Current Biology
, vol.15
, pp. 47-54
-
-
Farre, E.M.H.S.1
Harmon, F.G.2
Yanovsky, M.J.3
Kay, S.A.4
-
23
-
-
20444397414
-
Pseudo-Response Regulators (PRRs) or True Oscillator Components (TOCs)
-
Mizuno T, Nakamichi N (2005) Pseudo-Response Regulators (PRRs) or True Oscillator Components (TOCs). Plant Cell Physiol 46: 677-685.
-
(2005)
Plant Cell Physiol
, vol.46
, pp. 677-685
-
-
Mizuno, T.1
Nakamichi, N.2
-
24
-
-
18444403468
-
The Arabidopsis Pseudo-Response Regulators, PRR5 and PRR7, coordinately play essential roles for circadian clock function
-
Nakamichi N, Kita M, Ito S, Sato E, Yamashino T, et al. (2005) The Arabidopsis Pseudo-Response Regulators, PRR5 and PRR7, coordinately play essential roles for circadian clock function. Plant Cell Physiol 46: 609-619.
-
(2005)
Plant Cell Physiol
, vol.46
, pp. 609-619
-
-
Nakamichi, N.1
Kita, M.2
Ito, S.3
Sato, E.4
Yamashino, T.5
-
25
-
-
33846050368
-
Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana
-
Locke JCW, Kozma-Bognar L, Gould PD, Feher B, Kevei E, et al. (2006) Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Mol Syst Biol 2: 59.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 59
-
-
Locke, J.C.W.1
Kozma-Bognar, L.2
Gould, P.D.3
Feher, B.4
Kevei, E.5
-
26
-
-
33846085492
-
A novel computational model of the circadian clock in Arabidopsis that incoperates PRR7 and PRR9
-
Zeilinger NM, Farre EM, Taylor RS, Kay AS, Doyle FJ, III (2006) A novel computational model of the circadian clock in Arabidopsis that incoperates PRR7 and PRR9. Mol Syst Biol 2: e58.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Zeilinger, N.M.1
Farre, E.M.2
Taylor, R.S.3
Kay, A.S.4
Doyle I.I.I., F.J.5
-
27
-
-
0036301511
-
Robustness as a measure of plausibility in models of biochemical networks
-
Morohashi M, Winn AE, Borisuk MT, Bolouri H, Doyle J, et al. (2002) Robustness as a measure of plausibility in models of biochemical networks. J theor Biol 216: 19-30.
-
(2002)
J Theor Biol
, vol.216
, pp. 19-30
-
-
Morohashi, M.1
Winn, A.E.2
Borisuk, M.T.3
Bolouri, H.4
Doyle, J.5
-
28
-
-
23844519964
-
Circuit topology and the evolution of robustness in two-gene circadian oscillators
-
Wagner A (2005) Circuit topology and the evolution of robustness in two-gene circadian oscillators. Proc Natl Acad Sci U S A 102: 11775-11780.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 11775-11780
-
-
Wagner, A.1
-
29
-
-
0036302129
-
Comparative study of circadian clock models, in search of processes promoting oscillation
-
Kurosawa G, Mochizuki A, Iwasa Y (2002) Comparative study of circadian clock models, in search of processes promoting oscillation. J Theor Biol 216:193-208.
-
(2002)
J Theor Biol
, vol.216
, pp. 193-208
-
-
Kurosawa, G.1
Mochizuki, A.2
Iwasa, Y.3
-
31
-
-
34447277845
-
Topological difference of core regulatory networks induces different entrainmnet charateristics of plant and animal circadian clocks
-
Kim J, Bae W, Yoon Y, Cho K (2007) Topological difference of core regulatory networks induces different entrainmnet charateristics of plant and animal circadian clocks. Biophysical Journal-Biophysical Letter. pp L01-L03.
-
(2007)
Biophysical Journal-Biophysical Letter
-
-
Kim, J.1
Bae, W.2
Yoon, Y.3
Cho, K.4
-
32
-
-
27844464066
-
The effect of complexity on parameter sensitivity and model uncertainty in river water quality modelling
-
Lindenschmidt K (2006) The effect of complexity on parameter sensitivity and model uncertainty in river water quality modelling. Ecol Modell 190: 72-86.
-
(2006)
Ecol Modell
, vol.190
, pp. 72-86
-
-
Lindenschmidt, K.1
-
33
-
-
7644238181
-
Biological robustness
-
Kitano H (2004) Biological robustness. Nature Review Genetics 5: 826-837.
-
(2004)
Nature Review Genetics
, vol.5
, pp. 826-837
-
-
Kitano, H.1
-
34
-
-
34548825690
-
Toward a theory of biological robustness
-
Kitano H (2007) Toward a theory of biological robustness. Mol Syst Biol 3:137-144.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 137-144
-
-
Kitano, H.1
-
35
-
-
4544346660
-
Robustness of cellular functions
-
Stelling J, Sauer U, Szallasi Z, Doyle FJ, 3rd, Doyle J (2004) Robustness of cellular functions. Cell 118: 675-685.
-
(2004)
Cell
, vol.118
, pp. 675-685
-
-
Stelling, J.1
Sauer, U.2
Szallasi, Z.3
Doyle III, F.J.4
Doyle, J.5
-
36
-
-
33747894288
-
Circadian rhythm: A natural, robust, multi-scale control system
-
Doyle III FJ, Gunawan R, Bagheri N, Mirsky H, To TL (2006) Circadian rhythm: a natural, robust, multi-scale control system. Computers and Chemical Engineering 30: 1700-1711.
-
(2006)
Computers and Chemical Engineering
, vol.30
, pp. 1700-1711
-
-
Doyle I.I.I., F.J.1
Gunawan, R.2
Bagheri, N.3
Mirsky, H.4
To, T.L.5
-
39
-
-
0034688220
-
Circadian clocks limited by noise
-
Barkai N, Leibler S (2000) circadian clocks limited by noise. Nature 403:267-268.
-
(2000)
Nature
, vol.403
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
41
-
-
0026802334
-
Metabolic control analysis: A survey of its theoretical and experimental development
-
Fell DA (1992) Metabolic control analysis: a survey of its theoretical and experimental development. Biochem J 286: 313-330.
-
(1992)
Biochem J
, vol.286
, pp. 313-330
-
-
Fell, D.A.1
-
43
-
-
42549157090
-
Mathematical identification of critical reactions in the interlocked feedback model
-
Kurata H, Tanaka T, Ohnishi F (2007) Mathematical identification of critical reactions in the interlocked feedback model. PLoS ONE 2: e1103.
-
(2007)
PLoS ONE
, vol.2
-
-
Kurata, H.1
Tanaka, T.2
Ohnishi, F.3
-
44
-
-
27144517984
-
Interlinked fast and slow positive feedback loops drive reliable cell decisions
-
Brandman O, Ferrell JE, Jr., Li R, Meyer T (2005) Interlinked fast and slow positive feedback loops drive reliable cell decisions. Science 310: 496-498.
-
(2005)
Science
, vol.310
, pp. 496-498
-
-
Brandman, O.1
Ferrell Jr., J.E.2
Li, R.3
Meyer, T.4
-
45
-
-
39549106878
-
Robustness and stability of the gene regulatory network involved in DV boundary formation in the Drosophila wing
-
Buceta J, Herranz H, Canela-Xandri O, Reigada R, Sagues F, et al. (2007) Robustness and stability of the gene regulatory network involved in DV boundary formation in the Drosophila wing. PLoS ONE 2: e602.
-
(2007)
PLoS ONE
, vol.2
-
-
Buceta, J.1
Herranz, H.2
Canela-Xandri, O.3
Reigada, R.4
Sagues, F.5
-
46
-
-
41249092604
-
A computational study of synaptic mechanisms of partial memory transfer in cerebellar vestibulo-ocular-reflex learning
-
Masuda N, Amari S (2008) A computational study of synaptic mechanisms of partial memory transfer in cerebellar vestibulo-ocular-reflex learning. J Comput Neurosci 24: 137-156.
-
(2008)
J Comput Neurosci
, vol.24
, pp. 137-156
-
-
Masuda, N.1
Amari, S.2
-
49
-
-
0013823048
-
Oscillatory behavior in enzymatic control processes
-
Weber G, ed., Pergamon, Oxford, UK
-
Goodwin BC (1965) Oscillatory behavior in enzymatic control processes. In: Weber G, ed. Advances in Enzyme Regulation. Pergamon, Oxford, UK. Pp 425-438.
-
(1965)
Advances in Enzyme Regulation
, pp. 425-438
-
-
Goodwin, B.C.1
-
50
-
-
0033375755
-
Limit cycle models for circadian rhythms based on transcriptional regulation in Drosophila and Neurospora
-
Leloup J, Gonze D, Goldbeter A (1999) Limit cycle models for circadian rhythms based on transcriptional regulation in Drosophila and Neurospora. J Biol Rhythms 14: 433-448.
-
(1999)
J Biol Rhythms
, vol.14
, pp. 433-448
-
-
Leloup, J.1
Gonze, D.2
Goldbeter, A.3
-
51
-
-
0141843566
-
Saturation of enzyme kinetics in circadian clock models
-
Kurosawa G, Iwasa Y (2002) Saturation of enzyme kinetics in circadian clock models. J Biol Rhythms 17: 568-577.
-
(2002)
J Biol Rhythms
, vol.17
, pp. 568-577
-
-
Kurosawa, G.1
Iwasa, Y.2
-
52
-
-
31344450923
-
Temperature entrainment of the Arabidopsis circadian clock
-
Eckardt NA (2005) Temperature entrainment of the Arabidopsis circadian clock. Plant Cell 17: 645-647.
-
(2005)
Plant Cell
, vol.17
, pp. 645-647
-
-
Eckardt, N.A.1
-
53
-
-
0029979174
-
A light-entrainment mechanism for the Drosophila circadian clock
-
Zeng H, Qian Z, Myers MP, Rosbash M (1996) A light-entrainment mechanism for the Drosophila circadian clock. Nature 380: 129-135.
-
(1996)
Nature
, vol.380
, pp. 129-135
-
-
Zeng, H.1
Qian, Z.2
Myers, M.P.3
Rosbash, M.4
-
54
-
-
33845979486
-
A mathematical model for the Kai-protein-based chemical oscillator and clock gene expression rhythms in Cyanobacteria
-
Miyoshi F, Nakayama Y, Kaizu K, Iwasaki H, Tomita M (2007) A mathematical model for the Kai-protein-based chemical oscillator and clock gene expression rhythms in Cyanobacteria. J Biol Rhythms 22: 69-80.
-
(2007)
J Biol Rhythms
, vol.22
, pp. 69-80
-
-
Miyoshi, F.1
Nakayama, Y.2
Kaizu, K.3
Iwasaki, H.4
Tomita, M.5
-
55
-
-
33746593012
-
In silico evolution of functional modules in biochemical networks
-
Paladugu SR, Chickarmane V, Deckard A, Frumkin JP, McCormack M, et al. (2006) In silico evolution of functional modules in biochemical networks. IEE Proc-Syst Biol 153: 223-235.
-
(2006)
IEE Proc-Syst Biol
, vol.153
, pp. 223-235
-
-
Paladugu, S.R.1
Chickarmane, V.2
Deckard, A.3
Frumkin, J.P.4
McCormack, M.5
-
56
-
-
33847268619
-
Robustness can evolve gradually in complex regulatory gene networks with varying topology
-
Ciliberti S, Martin OC, Wagner A (2007) Robustness can evolve gradually in complex regulatory gene networks with varying topology. PLoS Comput Biol 3:e15.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Ciliberti, S.1
Martin, O.C.2
Wagner, A.3
-
57
-
-
39749099388
-
Analysis of feedback loops and robustness in network evolution based on Boolean models
-
Kwon Y, Cho K (2007) Analysis of feedback loops and robustness in network evolution based on Boolean models. BMC Bioinformatics 8: 1-9.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 1-9
-
-
Kwon, Y.1
Cho, K.2
|