A detailed predictive model of the mammalian circadian clock

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 25, 2003, Pages 14806-14811

  Forger, Daniel B ^a,b   Peskin, Charles S ^a,b  

^a NEW YORK UNIVERSITY   (United States)

^b NEW YORK UNIVERSITY   (United States)

Author keywords

CLOCK; CRY; Eukaryotic transcription regulation; Mathematical models; PER

Indexed keywords

ARTICLE; CIRCADIAN RHYTHM; DROSOPHILA; GENE DUPLICATION; HILL REACTION; KINETICS; MAMMAL CELL; MASS ACTION; MATHEMATICAL MODEL; MICHAELIS CONSTANT; MODEL; MOLECULAR MODEL; NEUROSPORA; OSCILLATION; PRIORITY JOURNAL; PROTEIN PROCESSING; TRANSCRIPTION REGULATION;

ANIMALS; CELL CYCLE PROTEINS; CELL NUCLEUS; CIRCADIAN RHYTHM; DROSOPHILA PROTEINS; EYE PROTEINS; FLAVOPROTEINS; GENE DUPLICATION; KINETICS; LIGHT; MICE; MODELS, THEORETICAL; MUTATION; NUCLEAR PROTEINS; PHOSPHORYLATION; PHOTORECEPTORS, INVERTEBRATE; RECEPTORS, G-PROTEIN-COUPLED; RNA, MESSENGER; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EUKARYOTA; MAMMALIA; NEUROSPORA;

EID: 0344736694     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2036281100     Document Type: Article

References (32)

1. Smolen, P., Baxter, D. A. & Byrne, J. H. (2001) J. Neurosci. 21, 6644-6656.
2. Kurosawa, G. & Iwasa, Y. (2002) J. Biol. Rhythms 17, 568-577.
3. Lee, C., Etchegaray, J. P., Cagampang, F. R., Loudon, A. S. & Reppert, S. M. (2001) Cell 107, 855-867.
4. Reppert, S. M. & Weaver, D. R. (2001) Annu. Rev. Physiol. 63, 647-676.
5. Yamaguchi, S., Mitsui, S., Miyake, S., Yan, L., Onishi, H., Yagita, K., Suzuki, M., Shibata, S., Kobayashi, M. & Okamura, H. (2000) Curr. Biol. 10, 873-876.
6. Kume, K., Zylka, M. J., Sriram, S., Shearman, L. P., Weaver, D. R., Jin, X. W., Maywood, E. S., Hastings, M. H. & Reppert, S. M. (1999) Cell 98, 193-205.
7. Etchegaray, J. P., Lee, C., Wade, P. A. & Reppert, S. M. (2003) Nature 421, 177-182.
8. Gekakis, N., Staknis, D., Nguyen, H. B., Davis, F. C., Wilsbacher, L. D., King, D. P., Takahashi, J. S. & Weitz, C. J. (1998) Science 280, 1564-1569.
9. von Gall, C., Noton, E., Lee, C. G. & Weaver, D. R. (2003) Eur. J. Neurosci. 18, 125-133.
10. Leloup, J. C. & Goldbeter, A. (2003) Proc. Natl. Acad. Sci. USA 100, 7051-7056.
11. Griffin, E. A., Staknis, D. & Weitz, C. J. (1999) Science 286, 768-771.
12. McDonald, M. J., Rosbash, M. & Emery, P. (2001) Mol. Cell. Biol. 21, 1207-1217.
13. Preitner, N., Damiola, F., Molina, L. L., Zakany, J., Duboule, D., Albrecht, U. & Schibler, U. (2002) Cell 110, 251-260.
14. Vielhaber, E. L., Duricka, D., Ullman, K. S. & Virshup, D. M. (2001) J. Biol. Chem. 276, 45921-45927.
15. Camacho, F., Cilio, M., Guo, Y., Virshup, D. M., Patel, K., Khorkova, O., Styren, S., Morse, B., Yao, Z. & Keesler, G. A. (2001) FEBS Lett. 489, 159-165.
16. Akashi, M., Tsuchiya, Y., Yoshino, T. & Nishida, E. (2002) Mol. Cell. Biol. 22, 1693-1703.
17. Eide, E. J., Vielhaber, E. L., Hinz, W. A. & Virshup, D. M. (2002) J. Biol. Chem. 277, 17248-17254.
18. Yagita, K., Tamanini, F., Yasuda, M., Hoeijmakers, J. H. J., van der Horst, G. T. J. & Okamura, H. (2002) EMBO J. 21, 1301-1314.
19. Yagita, K., Yamaguchi, S., Tamanini, F., van der Horst, G. T. J., Hoeijmakers, J. H. J., Yasui, A., Loros, J. J., Dunlap, J. C. & Okamura, H. (2000) Genes Dev. 14, 1353-1363.
20. Shearman, L. P., Sriram, S., Weaver, D. R., Maywood, E. S., Chaves, I., Zheng, B. H., Kume, K., Lee, C. C., van der Horst, G. T. J., Hastings, M. H., et al. (2000) Science 288, 1013-1019.
21. Bae, K., Jin, X. W., Maywood, E. S., Hastings, M. H., Reppert, S. M. & Weaver, D. R. (2001) Neuron 30, 525-536.
22. Shearman, L. P., Jin, X. W., Lee, C. G., Reppert, S. M. & Weaver, D. R. (2000) Mol. Cell. Biol. 20, 6269-6275.
23. Honma, S., Kawamoto, T., Takagi, Y., Fujimoto, K., Sato, F., Noshiro, M., Kato, Y. & Honma, K. (2002) Nature 419, 841-844.
24. Okamura, H., Miyake, S., Sumi, Y., Yamaguchi, S., Yasui, A., Muijtjens, M., Hoeijmakers, J. H. J. & van der Horst, G. T. J. (1999) Science 286, 2531-2534.
25. Reppert, S. M. & Weaver, D. R. (2002) Nature 418, 935-941.
26. Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K. & Watson, J. D. (1994) Molecular Biology of the Cell (Garland, New York).
27. Czeisler, C. A., Duffy, J. F., Shanahan, T. L., Brown, E. N., Mitchell, J. F., Rimmer, D. W., Ronda, J. M., Silva, E. J., Allan, J. S., Emens, J. S., et al. (1999) Science 284, 2177-2181.
28. Ueda, H. R., Chen, W. B., Adachi, A., Wakamatsu, H., Hayashi, S., Takasugi, T., Nagano, M., Nakahama, K., Suzuki, Y., Sugano, S., et al. (2002) Nature 418, 534-539.
29. Cermakian, N., Monaco, L., Pando, M. P., Dierich, A. & Sassone-Corsi, P. (2001) EMBO J. 20, 3967-3974.
30. Vitaterna, M. H., Selby, C. P., Todo, T., Niwa, H., Thompson, C., Fruechte, E. M., Hitomi, K., Thresher, R. J., Ishikawa, T., Miyazaki, U., et al. (1999) Proc. Natl. Acad. Sci. USA 96, 12114-12119.
31. van der Horst, G. T. J., Muijtjens, M., Kobayashi, K., Takano, R., Kanno, S., Takao, M., de Wit, J., Verkerk, A., Eker, A. P. M., van Leenen, D., et al. (1999) Nature 398, 627-630.
32. Oster, H., Yasui, A., van der Horst, G. T. & Albrecht, U. (2002) Genes Dev. 16, 2633-2638.