A cyanobacterial circadian clock based on the kai oscillator

Cold Spring Harbor Symposia on Quantitative Biology

Volumn 72, Issue , 2007, Pages 47-55

  Kondo, T ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; KAIA PROTEIN, CYANOBACTERIA; KAIB PROTEIN, CYANBACTERIA; KAIC PROTEIN, CYANOBACTERIA; MULTIPROTEIN COMPLEX; ADENOSINE TRIPHOSPHATASE; KAIA PROTEIN; KAIB PROTEIN; KAIC PROTEIN; UNCLASSIFIED DRUG;

BACTERIAL GENE; BIOLOGICAL MODEL; CIRCADIAN RHYTHM; GENETICS; METABOLISM; MULTIGENE FAMILY; PHOSPHORYLATION; PHYSIOLOGY; REVIEW; SYNECHOCOCCUS; CELL METABOLISM; ENZYME ACTIVITY; IN VITRO STUDY; MUTANT; NONHUMAN; OSCILLATION; PROTEIN PHOSPHORYLATION; PROTEIN PROTEIN INTERACTION; SYNECHOCOCCUS ELONGATUS; TEMPERATURE;

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEINS; CIRCADIAN RHYTHM; GENES, BACTERIAL; MODELS, BIOLOGICAL; MULTIGENE FAMILY; MULTIPROTEIN COMPLEXES; PHOSPHORYLATION; SYNECHOCOCCUS;

EID: 48249084897     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.2007.72.029     Document Type: Conference Paper

References (32)

1. Dunlap J.C., Loros J.J., and DeCoursey P.J. 2004. Chronobiology: Biological timekeeping. Sinauer, Sunderland, Massachusetts. Elowitz M.B., Levine A.J., Siggia E.D., and Swain P.S. 2002. Stochastic gene expression in a single cell. Science 297: 1183.
2. Emberly E. and Wingreen S.N. 2006. Hourglass model for a protein-based circadian oscillator. Phys. Rev. Lett. 96: 038303.
3. Golden S.S., Cassone V.M., and LiWang A. 2007. Shifting nanoscopic clock gears. Nat. Struct. Mol. Biol. 14: 362.
4. Hayashi F., Suzuki H., Iwase R., Uzumaki T., Miyake A., Shen J.R., Imada K., Furukawa Y., Yonekura K., Namba K., and Ishiura M. 2003. ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC. Genes Cells 8: 287.
5. Hyeon C., Lorimer G.H., and Thirumalai D. 2006. Dynamics of allosteric transitions in GroEL Proc. Natl. Acad. Sci. 103: 18939.
6. Ishiura M., Kutsuna S., Aoki S., Iwasaki H., Andersson C.R., Tanabe A., Golden S.S., Johnson C.H., and Kondo T. 1998. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281: 1519.
7. Ito H., Kageyama H., Mutsuda M., Nakajima M., Oyama T., and Kondo T. 2007. Origin of the resilience of the cyanobacterial circadian clock. Nat. Struct. Mol. Biol. (in press).
8. Iwasaki H., Nishiwaki T., Kitayama Y., Nakajima M., and Kondo T. 2002. KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria. Proc. Natl. Acad. Sci. 99: 15788.
9. Iwasaki H., Williams S.B., Kitayama Y., Ishiura M., Golden S.S., and Kondo T. 2000. A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101: 223.
10. Kageyama H., Kondo T., and Iwasaki H. 2003. Circadian formation of clock protein complexes by KaiA, KaiB, KaiC and SasA in cyanobacteria J. Biol. Chem. 278: 2388.
11. Kageyama H., Nishiwaki T., Nakajima M., Iwasaki H., Oyama T., and Kondo T. 2006. Cyanobacterial circadian pacemaker: Kai protein complex dynamics in the KaiC phosphorylation cycle in vitro. Mol. Cell 23: 161.
12. Kitayama Y., Iwasaki H., Nishiwaki T., and Kondo T. 2003. KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system. EMBO J. 22: 2127.
13. Kondo T., Mori T., Lebedeva N.V., Aoki S., Ishiura M., and Golden S.S. 1997. Circadian rhythms in rapidly dividing cyanobacteria. Science 275: 224.
14. Kondo T., Strayer C.A., Kulkarni R.D., Taylor W., Ishiura M., Golden S.S., and Johnson C.H. 1993. Circadian rhythms in prokaryotes luciferase as a reporter of circadian gene expression in cyanobacteria. Proc. Natl. Acad. Sci. 90: 5672.
15. Lee S., Choi J.-M., and Tsai F.T.F. 2007. Visualizing the ATPase cycle in a protein disaggregating machine: Structural basis for substrate binding by ClpB. Mol. Cell 25: 261.
16. Leipe D.D., Aravind L., Grishin N.V., and Koonin E.V. 2000. The bacterial replicative helicase DnaB evolved from a RecA duplication Genome Res. 10: 5.
17. Marrione P.E. and Cox M.M. 1995. RuvB protein-mediated ATP hydrolysis: Functional asymmetry in the RuvB hexamer Biochemistry 34: 9809.
18. Mihalcescu I., Hsing W., and Leibler S. 2004. Resilient circadian oscillator revealed in individual cyanobacteria. Nature 430: 81.
19. Mori T., Williams D.R., Byrne M.O., Qin X., Egli M., Mchaourab H.S., Stewart P.L., and Johnson C.H. 2007. Elucidating the ticking of an in vitro circadian clockwork. PLoS Biol. 5: e93.
20. Nakajima M., Imai K., Ito H., Nishiwaki T., Murayama Y., Iwasaki H., Oyama T., and Kondo T. 2005. Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308: 414.
21. Nishiwaki T., Satomi Y., Kitayama Y., Terauchi K., Kiyohara R., Takao T., and Kondo T. 2007. A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria. EMBO J. 26: 4029.
22. Nishiwaki T., Satomi Y., Nakajima M., Lee C., Kiyohara R., Kageyama H., Kitayama Y., Temamoto M., Yamaguchi A., Hijikata A., Go M., Iwasaki H., Takao T., and Kondo T. 2004. Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942. Proc. Natl. Acad. Sci. 101: 13927.
23. Pattanayek R., Wang J., Mori T., Xu Y., Johnson C.H., and Egli M. 2004. Visualizing a circadian clock protein: Crystal structure of KaiC and functional insights. Mol. Cell 15: 375.
24. Pattanayek R., Williams D.R., Pattanayek S., Xu Y., Mori T., Johnson C.H., Stewart P.L., and Egli M. 2006. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods. EMBO J. 25: 2017.
25. Rouiller I., DeLaBarre B., May A.P., Weis W.I., Brunger A.T., Milligan R.A., and Wilson-Kubalek E.M. 2002. Conformational changes of the multifunction p97 AAA ATPase during its ATPase cycle. Nat. Struct. Biol. 12: 950.
26. Takai N., Nakajima M., Oyama T., Kito R., Sugita C., Sugita M., Kondo T., and Iwasaki H. 2006. A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria. Proc. Natl. Acad. Sci. 103: 12109.
27. Taniguchi Y., Katayama M., Ito R., Takai1 N., Kondo T., and Oyama T. 2007. labA: A novel gene required for negative feedback regulation of the cyanobacterial circadian clock protein KaiC. Genes Dev. 21: 60.
28. Terauchi K., Kitayama Y., Nishiwaki T., Miwa K., Murayama Y., Oyama T., and Kondo T. 2007. The ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria. Proc. Natl. Acad. Sci. (in press).
29. Tomita J., Nakajima M., Kondo T., and Iwasaki H. 2005. No transcription-translation feedback in circadian rhythm of KaiC phosphorylation. Science 307: 251.
30. Wang J. 2004. Nucleotide-dependent domain motions within rings of the RecA/AAA(+) superfamily. J. Struct. Biol. 148: 259.
31. Xu Y., Mori T., Pattanayek R., Pattanayek S., Egli M., and Johnson C.H. 2004. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses. Proc. Natl. Acad. Sci. 101: 13933.
32. Ye J., Osborne A.R., Groll M., and Rapoport T.A. 2004. RecA-like motor ATPases - Lessons from structures Biochim. Biophys. Acta 1659: 1.