Robustness properties of circadian clock architectures

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 36, 2004, Pages 13210-13215

  Stelling, Jörg ^a   Gilles, Ernst Dieter ^a   Doyle III, Francis J ^b  

^a MAX PLANCK INSTITUTE FOR DYNAMICS OF COMPLEX TECHNICAL SYSTEMS   (Germany)

^b University of California   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CIRCADIAN RHYTHM; DROSOPHILA; FEEDBACK SYSTEM; MATHEMATICAL MODEL; NONHUMAN; OSCILLATOR; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION;

ANIMALS; BIOLOGICAL CLOCKS; CIRCADIAN RHYTHM; DROSOPHILA; FEEDBACK; MATHEMATICS; MODELS, THEORETICAL;

INSECTA;

EID: 4444322221     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0401463101     Document Type: Article

References (44)

1. Csete, M. E. & Doyle, J. C. (2002) Science 295, 1664-1669.
2. Lauffenburger, D. (2000) Proc. Natl. Acad. Sci. USA 97, 5031-5033.
3. Eldar, A., Dorfman, R., Weiss, D., Ashe, H., Shilo, B. Z. & Barkai, N. (2002) Nature 419, 304-308.
4. Stelling, J., Klamt, S., Schuster, S. & Gilles, E. D. (2002) Nature 420, 190-193.
5. Alon, U. M., Surette, G., Barkai, N. & Leibler, S. (1999) Nature 397, 168-171.
6. Yi, T. M., Huang, Y., Simon, M. & Doyle, J. (2000) Proc. Natl. Acad. Sci. USA 97, 4649-4653.
7. Ma, L. & Iglesias, P. A. (December 13, 2002) BMC Bioinformatics, 10.1186/1471-2105-3-38.
8. Goldbeter, A. (2002) Nature 420, 238-245.
9. Young, M. & Kay, S. (2001) Nat. Rev. Genet. 2, 702-725.
10. Panda, S., Hogenesch, J. & Kay, S. (2002) Nature 417, 329-335.
11. Roenneberg, T. & Merrow, M. (2003) Curr. Biol. 13, R196-R207.
12. Cyran, S. A., Buchsbaum, A. M., Reddy, K. L., Lin, M. C., Glossop, N. R., Hardin, P. E., Young, M. W., Storti, R. V. & Blau, J. (2003) Cell 112, 329-341.
13. Leloup, J.-C, Gonze, D. & Goldbeter, A. (1999) J. Biol. Rhythms 14, 433-448.
14. Ruoff, P., Vinsjevik, M., Monnerjahn, C. & Rensing, L. (2001) J. Theor. Biol. 209, 29-42.
15. Smolen, P., Baxter, D. A. & Byrne, J. H. (2001) J. Neurosci. 21, 6644-6656.
16. Goldbeter, A. (1995) Proc. R. Soc. London Ser. B 261, 319-324.
17. Leloup, J.-C. & Goldbeter, A. (1998) J. Biol. Rhythms 13, 70-87.
18. Tyson, J., Hong, C., Thron, D. & Novak, B. (1999) Biophys. J. 77, 2411-2417.
19. Ueda, H. R., Hagiwara, M. & Kitano, H. (2001) J. Theor. Biol. 210, 401-406.
20. Leloup, J.-C. & Goldbeter, A. (2003) Proc. Natl. Acad. Sci. USA 100, 7051-7056.
21. Forger, D. B. & Peskin, C. S. (2003) Proc. Natl. Acad. Sci. USA 100, 14806-14811.
22. Smolen, P., Baxter, D. A. & Byrne, J. H. (2002) Biophys. J. 83, 2349-2359.
23. Angeli, D. & Sontag, E. D. (2004) in Optimal Control, Stabilization, and Nonsmooth Analysis, eds. de Queiroz, M., Malisoff, M. & Wolenski, P. (Springer, Heidelberg), pp. 135-154.
24. Hastings, M. H. (2000) Nat. Rev. Neurosci, 1, 143-146.
25. Gonze, D., Halloy, J. & Goldbeter, A. (2002) Proc. Natl. Acad. Sci. USA 99, 673-678.
26. Savageau, M. (1971) Nature 229, 542-544.
27. Ingalls, B. P. & Sauro, H. M. (2003) J. Theor. Biol. 222, 23-36.
28. Zak, D., Stelling, J. & Doyle, F. J., III (2004) Comp. Chem. Eng., in press.
29. Helton, J. & Davis, F. (2000) in Sensitivity Analysis, eds. Saltelli, A., Chan, K. & Scott, E. (Wiley, Chichester, U.K.), pp. 101-153.
30. Toh, K. L., Jones, C. R., He, Y., Eide, E. J., Hinz, W. A., Virshup, D. M., Ptacek, L. J. & Fu, Y. H. (2001) Science 291, 1040-1043.
31. Ebisawa, T., Uchiyama, M., Kajimura, N., Mishima, K., Kamei, Y., Katoh, M., Watanabe, T., Sekimoto, M., Shibui, K., Kim, K., et al. (2001) EMBO Rep. 2, 342-346.
32. Heinrich, R., Neel, B. G. & Rapoport, T. A. (2002) Mol. Cell 9, 957-970.
33. Bhalla, U. S., Ram, P. T. & Iyengar, R. (2002) Science 297, 1018-1023.
34. Santhyanarayanan, S., Zheng, R., Xiao, R. & Seghal, A. (2004) Cell 116, 603-615.
35. Allada, R., Kadener, S., Nadakumar, N. & Rosbash, M. (2003) EMBO J. 22, 3367-3375.
36. Golden, S. S. (2003) Curr. Opin. Microbiol. 6, 535-540.
37. Grima, B., Lamouroux, A., Chelot, F., Papin, C., Limbourg-Bouchon, B. & Rouyer, F. (2002) Nature 420, 178-182.
38. Ko, H. W., Jiang, J. & Edery, I. (2002) Nature 420, 673-678.
39. Newman, M., Girvan, M. & Farmer, J. (2002) Phys. Rev. Lett. 89, 28301.
40. Morohashi, M., Winn, A. E., Borisuk, M. T., Bolouri, H., Doyle, J. & Kitano, H. (2002) J. Theor. Biol. 216, 19-30.
41. Lee, E., Salic, A., Krüger, R., Heinrich, R. & Kirschner, M. W. (October 13, 2003) PLoS Biol., 10.1371/journal.pbio.0000010.
42. Carlson, J. & Doyle, J. (2002) Proc. Natl. Acad. Sci. USA 99, 2538-2545.
43. Sontag, E. D. (2003) Syst. Control Lett. 50, 119-126.
44. Hasty, J., McMillen, D. & Collins, J. J. (2002) Nature 420, 224-230.