-
1
-
-
0034646235
-
Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli
-
Barends, S., Wower, J., and Kraal, B. 2000. Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli. Biochemistry 39: 2652-2658.
-
(2000)
Biochemistry
, vol.39
, pp. 2652-2658
-
-
Barends, S.1
Wower, J.2
Kraal, B.3
-
2
-
-
0035900548
-
Simultaneous and functional binding of SmpB and EF-Tu-GTP to the alanyl acceptor arm of tmRNA
-
Barends, S., Karzai, A.W., Sauer, R.T., Wower, J., and Kraal, B. 2001. Simultaneous and functional binding of SmpB and EF-Tu-GTP to the alanyl acceptor arm of tmRNA. J. Mol. Biol. 314: 9-21.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 9-21
-
-
Barends, S.1
Karzai, A.W.2
Sauer, R.T.3
Wower, J.4
Kraal, B.5
-
3
-
-
0242681804
-
Alteration of polynucleotide secondary structure by ribosomal protein S1
-
Bear, D.G., Ng, R., Van Derveer, D., Johnson, N.P., Thomas, G., Schleich, T., and Noller, H.F. 1976. Alteration of polynucleotide secondary structure by ribosomal protein S1. Proc. Natl. Acad. Sci. 73: 1824-1828.
-
(1976)
Proc. Natl. Acad. Sci.
, vol.73
, pp. 1824-1828
-
-
Bear, D.G.1
Ng, R.2
Van Derveer, D.3
Johnson, N.P.4
Thomas, G.5
Schleich, T.6
Noller, H.F.7
-
4
-
-
0024398325
-
The gene for a small stable RNA (10Sa RNA) of Escherichia coli
-
Chauhan, A.K. and Apirion, D. 1989. The gene for a small stable RNA (10Sa RNA) of Escherichia coli. Mol. Microbiol. 3: 1481-1485.
-
(1989)
Mol. Microbiol.
, vol.3
, pp. 1481-1485
-
-
Chauhan, A.K.1
Apirion, D.2
-
5
-
-
0030436199
-
Structural organization of Escherichia coli tmRNA
-
Felden, B., Himeno, H., Muto, A., Atkins, J.F., and Gesteland, R.F. 1996. Structural organization of Escherichia coli tmRNA. Biochimie 78: 979-983.
-
(1996)
Biochimie
, vol.78
, pp. 979-983
-
-
Felden, B.1
Himeno, H.2
Muto, A.3
Atkins, J.F.4
Gesteland, R.F.5
-
6
-
-
0031014984
-
Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)
-
Felden, B., Himeno, H., Muto, A., McCutcheon, J.P., Atkins, J.F., and Gesteland, R.F. 1997. Probing the structure of the Escherichia coli 10Sa RNA (tmRNA). RNA 3: 89-103.
-
(1997)
RNA
, vol.3
, pp. 89-103
-
-
Felden, B.1
Himeno, H.2
Muto, A.3
McCutcheon, J.P.4
Atkins, J.F.5
Gesteland, R.F.6
-
7
-
-
0345255236
-
Evidence that the bypassing ribosome travels through the coding gap
-
Gallant, J., Bonthuis, P., and Lindsley, D. 2003. Evidence that the bypassing ribosome travels through the coding gap. Proc. Natl. Acad. Sci. 100: 13430-13435.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 13430-13435
-
-
Gallant, J.1
Bonthuis, P.2
Lindsley, D.3
-
8
-
-
0346494971
-
The tmRNA website: Reductive evolution of tmRNA in plastids and other endosymbionts
-
Gueneau de Novoa, P. and Williams, K.P. 2004. The tmRNA website: Reductive evolution of tmRNA in plastids and other endosymbionts. Nucleic Acids Res. 32: D104-108.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Gueneau De Novoa, P.1
Williams, K.P.2
-
9
-
-
2942755867
-
Pre-binding of small protein B to a stalled ribosome triggers trans-translation
-
Hallier, M., Ivanova, N., Rametti, A., Pavlov, M., Ehrenberg, M., and Felden, B. 2004. Pre-binding of small protein B to a stalled ribosome triggers trans-translation. J. Biol. Chem. 279: 25978-25985.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 25978-25985
-
-
Hallier, M.1
Ivanova, N.2
Rametti, A.3
Pavlov, M.4
Ehrenberg, M.5
Felden, B.6
-
10
-
-
0345465673
-
SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
-
Karzai, A.W., Susskind, M.M., and Sauer, R.T. 1999. SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J. 18: 3793-3799.
-
(1999)
EMBO J.
, vol.18
, pp. 3793-3799
-
-
Karzai, A.W.1
Susskind, M.M.2
Sauer, R.T.3
-
11
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
-
Keiler, K.C., Waller, P.R., and Sauer, R.T. 1996. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271: 990-993.
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.2
Sauer, R.T.3
-
12
-
-
0028124122
-
A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
-
Komine, Y., Kitabatake, M., Yokogawa, T., Nishikawa, K., and Inokuchi, H. 1994. A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc. Natl. Acad. Sci. 91: 9223-9227.
-
(1994)
Proc. Natl. Acad. Sci.
, vol.91
, pp. 9223-9227
-
-
Komine, Y.1
Kitabatake, M.2
Yokogawa, T.3
Nishikawa, K.4
Inokuchi, H.5
-
13
-
-
0033214805
-
Cloning and biochemical characterization of Bacillus subtilis Yxin, a DEAD protein specifically activated by 23S rRNA: Delineation of a novel sub-family of bacterial DEAD proteins
-
Kossen, K., and Uhlenbeck, O.C. 1999. Cloning and biochemical characterization of Bacillus subtilis Yxin, a DEAD protein specifically activated by 23S rRNA: Delineation of a novel sub-family of bacterial DEAD proteins. Nucleic Acids Res. 27: 3811-3820.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3811-3820
-
-
Kossen, K.1
Uhlenbeck, O.C.2
-
14
-
-
0032539857
-
3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
-
Li, Z., Pandit, S., and Deutscher, M.P. 1998. 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc. Natl. Acad. Sci. 95: 2856-2861.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 2856-2861
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.P.3
-
15
-
-
0033607239
-
RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
-
Lin-Chao, S., Wei, C.L., and Lin, Y.T. 1999. RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proc. Natl. Acad. Sci. 96: 12406-12411.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 12406-12411
-
-
Lin-Chao, S.1
Wei, C.L.2
Lin, Y.T.3
-
16
-
-
0037029113
-
Tandem termination signals: Myth or reality?
-
Major, L.L., Edgar, T.D., Yip, P.Y., Isaksson, L.A., and Tate, W.P. 2002. Tandem termination signals: Myth or reality? FEBS Lett. 514: 84-89.
-
(2002)
FEBS Lett.
, vol.514
, pp. 84-89
-
-
Major, L.L.1
Edgar, T.D.2
Yip, P.Y.3
Isaksson, L.A.4
Tate, W.P.5
-
17
-
-
0026534528
-
10Sa RNA: Processing by and inhibition of RNase III
-
Makarov, E.M. and Apirion, D. 1992. 10Sa RNA: Processing by and inhibition of RNase III. Biochem Int. 26: 1115-1124.
-
(1992)
Biochem Int.
, vol.26
, pp. 1115-1124
-
-
Makarov, E.M.1
Apirion, D.2
-
18
-
-
4544289260
-
Ribosomal protein S1 binds mRNA and tmRNA similarly but plays distinct roles in translation of these molecules
-
McGinness, KE. and Sauer, R.T. 2004. Ribosomal protein S1 binds mRNA and tmRNA similarly but plays distinct roles in translation of these molecules. Proc. Natl. Acad. Sci. 101: 13454-13459.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 13454-13459
-
-
McGinness, K.E.1
Sauer, R.T.2
-
19
-
-
11144344469
-
Contribution of the second OB fold of ribosomal protein S1 from Escherichia coli to the recognition of tmRNA
-
Okada, T., Wower, I.K., Wower, J., Zwieb, C.W., and Kimura, M. 2004. Contribution of the second OB fold of ribosomal protein S1 from Escherichia coli to the recognition of tmRNA. Biosci. Biotech. BioChem. 68: 2319-2325.
-
(2004)
Biosci. Biotech. BioChem.
, vol.68
, pp. 2319-2325
-
-
Okada, T.1
Wower, I.K.2
Wower, J.3
Zwieb, C.W.4
Kimura, M.5
-
20
-
-
0028923775
-
High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: Comparison of natural and unnatural binding sites
-
Ringquist, S., Jones, T., Snyder, E.E., Gibson, T., Boni, I., and Gold, L. 1995. High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: Comparison of natural and unnatural binding sites. Biochemistry 34: 3640-3648.
-
(1995)
Biochemistry
, vol.34
, pp. 3640-3648
-
-
Ringquist, S.1
Jones, T.2
Snyder, E.E.3
Gibson, T.4
Boni, I.5
Gold, L.6
-
21
-
-
0032840381
-
Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu
-
Rudinger-Thirion, J., Giege, R., and Felden, B. 1999. Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu. RNA 5: 989-992.
-
(1999)
RNA
, vol.5
, pp. 989-992
-
-
Rudinger-Thirion, J.1
Giege, R.2
Felden, B.3
-
22
-
-
0014666439
-
Polypeptide chain initiation: Nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA
-
Steitz, J.A. 1969. Polypeptide chain initiation: Nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA. Nature 224: 957-964.
-
(1969)
Nature
, vol.224
, pp. 957-964
-
-
Steitz, J.A.1
-
23
-
-
0020671323
-
Structure and functions of ribosomal protein S1
-
Subramanian, A.R. 1983. Structure and functions of ribosomal protein S1. Prog. Nucleic Acid Res. Mol. Biol. 28: 101-142.
-
(1983)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.28
, pp. 101-142
-
-
Subramanian, A.R.1
-
24
-
-
0018618448
-
Nucleic acid binding and unfolding properties of ribosomal protein S1 and the derivatives S1-F1 and m1-S1
-
Thomas, J.O., Boublik, M., Szer, W., and Subramanian, A.R. 1979. Nucleic acid binding and unfolding properties of ribosomal protein S1 and the derivatives S1-F1 and m1-S1. Eur. J. Biochem. 102: 309-314.
-
(1979)
Eur. J. Biochem.
, vol.102
, pp. 309-314
-
-
Thomas, J.O.1
Boublik, M.2
Szer, W.3
Subramanian, A.R.4
-
25
-
-
0028906813
-
C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide
-
Tu, G.F., Reid, G.E., Zhang, J.G., Moritz, R.L., and Simpson, R.J. 1995. C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide. J. Biol. Chem. 270: 9322-9326.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 9322-9326
-
-
Tu, G.F.1
Reid, G.E.2
Zhang, J.G.3
Moritz, R.L.4
Simpson, R.J.5
-
26
-
-
0242515749
-
Visualizing tmRNA entry into a stalled ribosome
-
Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., and Frank, J. 2003. Visualizing tmRNA entry into a stalled ribosome. Science 300: 127-130.
-
(2003)
Science
, vol.300
, pp. 127-130
-
-
Valle, M.1
Gillet, R.2
Kaur, S.3
Henne, A.4
Ramakrishnan, V.5
Frank, J.6
-
27
-
-
0029907105
-
Phylogenetic analysis of tmRNA secondary structure
-
Williams, K.P. and Bartel, D.P. 1996. Phylogenetic analysis of tmRNA secondary structure. RNA 2: 1306-1310.
-
(1996)
RNA
, vol.2
, pp. 1306-1310
-
-
Williams, K.P.1
Bartel, D.P.2
-
28
-
-
0034423519
-
Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome
-
Wower, I.K., Zwieb, C.W., Guven, S.A., and Wower, J. 2000. Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome. EMBO J. 19: 6612-6621.
-
(2000)
EMBO J.
, vol.19
, pp. 6612-6621
-
-
Wower, I.K.1
Zwieb, C.W.2
Guven, S.A.3
Wower, J.4
-
29
-
-
11144236530
-
Contributions of pseudoknots and protein SmpB to the structure and function of tmRNA in trans-translation
-
Wower, I.K., Zwieb, C., and Wower, J. 2004. Contributions of pseudoknots and protein SmpB to the structure and function of tmRNA in trans-translation. J. Biol. Chem. 279: 54202-54209.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 54202-54209
-
-
Wower, I.K.1
Zwieb, C.2
Wower, J.3
-
30
-
-
0035958587
-
The path of messenger RNA through the ribosome
-
Yusupova, G.Z., Yusupov, M.M., Cate, J.H., and Noller, H.F. 2001. The path of messenger RNA through the ribosome. Cell 106: 233-241.
-
(2001)
Cell
, vol.106
, pp. 233-241
-
-
Yusupova, G.Z.1
Yusupov, M.M.2
Cate, J.H.3
Noller, H.F.4
-
31
-
-
0000762684
-
Comparative three-dimensional modeling of tmRNA
-
Zwieb, C., Muller, F., and Wower, J. 1999a. Comparative three-dimensional modeling of tmRNA. Nucleic Acids Symp. Ser. 41: 200-204.
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 200-204
-
-
Zwieb, C.1
Muller, F.2
Wower, J.3
-
32
-
-
0033562579
-
Comparative sequence analysis of tmRNA
-
Zwieb, C., Wower, I., and Wower, J. 1999b. Comparative sequence analysis of tmRNA. Nucleic Acids Res. 27: 2063-2071.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2063-2071
-
-
Zwieb, C.1
Wower, I.2
Wower, J.3
-
33
-
-
0037246703
-
tmRDB (tmRNA database)
-
Zwieb, C., Gorodkin, J., Knudsen, B., Burks, J., and Wower, J. 2003. tmRDB (tmRNA database). Nucleic Acids Res. 31: 446-447.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 446-447
-
-
Zwieb, C.1
Gorodkin, J.2
Knudsen, B.3
Burks, J.4
Wower, J.5
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