-
1
-
-
0001755271
-
Dynamics of the genetic code
-
Gesteland, R.F., Cech, T.R. and Atkins, J.F. (eds). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Atkins, J.F., Böck, A., Matsufuji, S. and Gesteland, R.F. (1999) Dynamics of the genetic code. In Gesteland, R.F., Cech, T.R. and Atkins, J.F. (eds), The RNA World. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 637-673.
-
(1999)
The RNA World
, pp. 637-673
-
-
Atkins, J.F.1
Böck, A.2
Matsufuji, S.3
Gesteland, R.F.4
-
2
-
-
0029670766
-
Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA and a truncated R1pA
-
Bass, S., Gu, Q. and Christen, A. (1996) Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA and a truncated R1pA. J. Bacteriol., 178, 1154-1161.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1154-1161
-
-
Bass, S.1
Gu, Q.2
Christen, A.3
-
3
-
-
0032212454
-
Analysis of recombinant human ADP-ribosylation factors by reversed-phase high-performance liquid chromatography and electrospray mass spectrometry
-
Berger, S.J., Claude, A.C. and Melançon, P. (1998) Analysis of recombinant human ADP-ribosylation factors by reversed-phase high-performance liquid chromatography and electrospray mass spectrometry. Anal. Biochem., 264, 53-65.
-
(1998)
Anal. Biochem.
, vol.264
, pp. 53-65
-
-
Berger, S.J.1
Claude, A.C.2
Melançon, P.3
-
4
-
-
0017655183
-
The attenuator of the tryptophan operon of Escherichia coli. Heterogeneous 3′-OH termini in vivo and deletion mapping of functions
-
Bertrand, K., Korn, L.J., Lee, F. and Yanofsky, C. (1977) The attenuator of the tryptophan operon of Escherichia coli. Heterogeneous 3′-OH termini in vivo and deletion mapping of functions. J. Mol. Biol., 117, 227-247.
-
(1977)
J. Mol. Biol.
, vol.117
, pp. 227-247
-
-
Bertrand, K.1
Korn, L.J.2
Lee, F.3
Yanofsky, C.4
-
5
-
-
0030457112
-
Programmed translational frameshifting
-
Farabaugh, P.J. (1996) Programmed translational frameshifting. Annu. Rev. Genet., 30, 507-528.
-
(1996)
Annu. Rev. Genet.
, vol.30
, pp. 507-528
-
-
Farabaugh, P.J.1
-
6
-
-
0031014984
-
Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)
-
Felden, B., Himeno, H., Muto, A., McCutcheon, J.P., Atkins, J.F. and Gesteland, R.F. (1997) Probing the structure of the Escherichia coli 10Sa RNA (tmRNA). RNA, 3, 89-103.
-
(1997)
RNA
, vol.3
, pp. 89-103
-
-
Felden, B.1
Himeno, H.2
Muto, A.3
McCutcheon, J.P.4
Atkins, J.F.5
Gesteland, R.F.6
-
7
-
-
0032101712
-
Presence and location of modified nucleotides in Escherichia coli tmRNA: Structural mimicry with tRNA acceptor branches
-
Felden, B., Hanawa, K., Atkins, J.F., Himeno, H., Muto, A., Gesteland, R.F., McCloskey, J.A. and Crain, P.F. (1998) Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches. EMBO J., 17, 3188-3196.
-
(1998)
EMBO J.
, vol.17
, pp. 3188-3196
-
-
Felden, B.1
Hanawa, K.2
Atkins, J.F.3
Himeno, H.4
Muto, A.5
Gesteland, R.F.6
McCloskey, J.A.7
Crain, P.F.8
-
8
-
-
0029896020
-
Receding: Dynamic reprogramming of translation
-
Gesteland, R.F. and Atkins, J.F. (1996) Receding: dynamic reprogramming of translation. Annu. Rev. Biochem., 65, 741-768.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 741-768
-
-
Gesteland, R.F.1
Atkins, J.F.2
-
9
-
-
0024252185
-
Extension inhibition analysis of translation initiation complexes
-
Hartz, D., McPheeters, D.S., Traut, R. and Gold, L. (1988) Extension inhibition analysis of translation initiation complexes. Methods Enzymol., 164, 419-425.
-
(1988)
Methods Enzymol.
, vol.164
, pp. 419-425
-
-
Hartz, D.1
McPheeters, D.S.2
Traut, R.3
Gold, L.4
-
10
-
-
0032511223
-
A nickel complex cleaves uridine in folded RNA structures: Application to E.coli tmRNA and related engineered molecules
-
Hickerson, R.P., Watkins-Sims, C.D., Burrows, C.J., Atkins, J.F., Gesteland, R.F. and Felden, B. (1998) A nickel complex cleaves uridine in folded RNA structures: application to E.coli tmRNA and related engineered molecules. J. Mol. Biol., 279, 577-587.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 577-587
-
-
Hickerson, R.P.1
Watkins-Sims, C.D.2
Burrows, C.J.3
Atkins, J.F.4
Gesteland, R.F.5
Felden, B.6
-
11
-
-
0031584271
-
In vitro trans translation mediated by alanine-charged 10Sa RNA
-
Himeno, H., Sato, M., Tadaki, T., Fukushima, M., Ushida, C. and Muto, A. (1997) In vitro trans translation mediated by alanine-charged 10Sa RNA. J. Mol. Biol., 268, 803-808.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 803-808
-
-
Himeno, H.1
Sato, M.2
Tadaki, T.3
Fukushima, M.4
Ushida, C.5
Muto, A.6
-
12
-
-
0023909946
-
A persistent untranslated sequence within bacteriophage T4 DNA topoisomerase gene 60
-
Huang, W.M., Ao, S.Z., Casjens, S., Orlandi, R., Zeikus, R., Weiss, R., Winge, D. and Fang, M. (1988) A persistent untranslated sequence within bacteriophage T4 DNA topoisomerase gene 60. Science, 239, 1005-1012.
-
(1988)
Science
, vol.239
, pp. 1005-1012
-
-
Huang, W.M.1
Ao, S.Z.2
Casjens, S.3
Orlandi, R.4
Zeikus, R.5
Weiss, R.6
Winge, D.7
Fang, M.8
-
13
-
-
0345465673
-
SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
-
Karzai, A.W., Susskind, M.M. and Sauer, R.T. (1999) SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J., 18, 3793-3799.
-
(1999)
EMBO J.
, vol.18
, pp. 3793-3799
-
-
Karzai, A.W.1
Susskind, M.M.2
Sauer, R.T.3
-
14
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
-
Keiler, K.C., Waller, P.R. and Sauer, R.T. (1996) Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science, 271, 990-993.
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.2
Sauer, R.T.3
-
15
-
-
0029843213
-
The DegP and DegQ periplasmic endoproteases of Escherichia coli: Specificity for cleavage sites and substrate conformation
-
Kolmar, H., Waller, P.R. and Sauer, R.T. (1996) The DegP and DegQ periplasmic endoproteases of Escherichia coli: specificity for cleavage sites and substrate conformation. J. Bacteriol., 178, 5925-5929.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5925-5929
-
-
Kolmar, H.1
Waller, P.R.2
Sauer, R.T.3
-
16
-
-
0028124122
-
A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
-
Komine, Y., Kitabatake, M., Yokogawa, T., Nishikawa, K. and Inokuchi, H. (1994) A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc. Natl Acad. Sci. USA, 91, 9223-9227.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 9223-9227
-
-
Komine, Y.1
Kitabatake, M.2
Yokogawa, T.3
Nishikawa, K.4
Inokuchi, H.5
-
17
-
-
0031939779
-
A bacterial RNA that functions as both a tRNA and an mRNA
-
Muto, A., Ushida, C. and Himeno, H. (1998) A bacterial RNA that functions as both a tRNA and an mRNA. Trends Biochem. Sci., 23, 25-29.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 25-29
-
-
Muto, A.1
Ushida, C.2
Himeno, H.3
-
18
-
-
0033605218
-
Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E.coli tmRNA
-
Nameki, N., Felden, B., Atkins, J.F., Gesteland, R.F., Himeno, H. and Muto, A. (1999a) Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E.coli tmRNA. J. Mol. Biol., 286, 733-744.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 733-744
-
-
Nameki, N.1
Felden, B.2
Atkins, J.F.3
Gesteland, R.F.4
Himeno, H.5
Muto, A.6
-
19
-
-
0033612218
-
Amino acid acceptor identity switch of Escherichia coli tmRNA from alanine to histidine in vitro
-
Nameki, N., Tadaki, T., Muto, A. and Himeno, H. (1999b) Amino acid acceptor identity switch of Escherichia coli tmRNA from alanine to histidine in vitro. J. Mol. Biol., 289, 1-7.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1-7
-
-
Nameki, N.1
Tadaki, T.2
Muto, A.3
Himeno, H.4
-
20
-
-
0030832397
-
Co-translational protein targeting catalyzed by the Escherichia coli signal recognition particle and its receptor
-
Powers, T. and Waller, P. (1997) Co-translational protein targeting catalyzed by the Escherichia coli signal recognition particle and its receptor. EMBO J., 16, 4880-4886.
-
(1997)
EMBO J.
, vol.16
, pp. 4880-4886
-
-
Powers, T.1
Waller, P.2
-
21
-
-
0033575660
-
SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
-
Roche, E.D. and Sauer, R.T. (1999) SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J., 18, 4579-4589.
-
(1999)
EMBO J.
, vol.18
, pp. 4579-4589
-
-
Roche, E.D.1
Sauer, R.T.2
-
22
-
-
0022896751
-
Mapping and complementation studies of the gene for release factor 1
-
Ryden, M., Murphy, J., Martin, R., Isaksson, L. and Gallant, J. (1986) Mapping and complementation studies of the gene for release factor 1. J. Bacteriol., 168, 1066-1069.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 1066-1069
-
-
Ryden, M.1
Murphy, J.2
Martin, R.3
Isaksson, L.4
Gallant, J.5
-
23
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider, T.D. and Stephens, R.M. (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res., 18, 6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
24
-
-
0028084846
-
Deletion of the prc (tsp) gene provides evidence for additional tail-specific proteolytic activity in Escherichia coli K-12
-
Silber, K.R. and Sauer, R.T. (1994) Deletion of the prc (tsp) gene provides evidence for additional tail-specific proteolytic activity in Escherichia coli K-12. Mol. Gen. Genet., 242, 237-240.
-
(1994)
Mol. Gen. Genet.
, vol.242
, pp. 237-240
-
-
Silber, K.R.1
Sauer, R.T.2
-
25
-
-
0007981475
-
Ribosome recognition of initiator regions in the RNA bacteriophage genome
-
Zinder, N. (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Steitz, J.A. (1975) Ribosome recognition of initiator regions in the RNA bacteriophage genome. In Zinder, N. (ed.), RNA Phages. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 319-352.
-
(1975)
RNA Phages
, pp. 319-352
-
-
Steitz, J.A.1
-
26
-
-
0029773416
-
Three, four or more: The translational stop signal at length
-
Tate, W.P. and Mannering, S.A. (1996) Three, four or more: the translational stop signal at length. Mol. Microbiol., 21, 213-219.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 213-219
-
-
Tate, W.P.1
Mannering, S.A.2
-
27
-
-
0028906813
-
C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide
-
Tu, G.F., Reid, G.E., Zhang, J.G., Moritz, R.L. and Simpson, R.J. (1995) C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide. J. Biol. Chem., 270, 9322-9326.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 9322-9326
-
-
Tu, G.F.1
Reid, G.E.2
Zhang, J.G.3
Moritz, R.L.4
Simpson, R.J.5
-
28
-
-
0028170454
-
tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis
-
Ushida, C., Himeno, H., Watanabe, T. and Muto, A. (1994) tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis. Nucleic Acids Res., 22, 3392-3396.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3392-3396
-
-
Ushida, C.1
Himeno, H.2
Watanabe, T.3
Muto, A.4
-
29
-
-
0030066650
-
Characterization of degQ and degS, Escherichia coli genes encoding homologs of the DegP protease
-
Waller, P.R. and Sauer, R.T. (1996) Characterization of degQ and degS, Escherichia coli genes encoding homologs of the DegP protease. J. Bacteriol., 178, 1146-1153.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1146-1153
-
-
Waller, P.R.1
Sauer, R.T.2
-
30
-
-
0025312745
-
A nascent peptide is required for ribosomal bypass of the coding gap in bacteriophage T4 gene 60
-
Weiss, R.B., Huang, W.M. and Dunn, D.M. (1990) A nascent peptide is required for ribosomal bypass of the coding gap in bacteriophage T4 gene 60. Cell, 62, 117-126.
-
(1990)
Cell
, vol.62
, pp. 117-126
-
-
Weiss, R.B.1
Huang, W.M.2
Dunn, D.M.3
-
31
-
-
0032919367
-
The tmRNA website
-
Williams, K.P. (1999) The tmRNA website. Nucleic Acids Res., 27, 165-166.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 165-166
-
-
Williams, K.P.1
-
32
-
-
0029907105
-
Phylogenetic analysis of tmRNA secondary structure
-
Williams, K.P. and Bartel, D.P. (1996) Phylogenetic analysis of tmRNA secondary structure. RNA, 2, 1306-1310.
-
(1996)
RNA
, vol.2
, pp. 1306-1310
-
-
Williams, K.P.1
Bartel, D.P.2
|