-
1
-
-
33749870567
-
Structure of eEF3 and the mechanism of transfer RNA release from the E-site
-
Andersen C.B.F., Becker T., Blau M., Anand M., Halic M., Balar B., Mielke T., Boesen T., Pedersen J.S., Spahn C.M.T., Kinzy T.G., Andersen G.R., and Beckmann R. Structure of eEF3 and the mechanism of transfer RNA release from the E-site. Nature 443 (2006) 663-668
-
(2006)
Nature
, vol.443
, pp. 663-668
-
-
Andersen, C.B.F.1
Becker, T.2
Blau, M.3
Anand, M.4
Halic, M.5
Balar, B.6
Mielke, T.7
Boesen, T.8
Pedersen, J.S.9
Spahn, C.M.T.10
Kinzy, T.G.11
Andersen, G.R.12
Beckmann, R.13
-
2
-
-
33847358277
-
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors
-
Connell S.R., Takemoto C., Wilson D.N., Wang H., Murayama K., Terada T., Shirouzu M., Rost M., Schüler M., Giesebrecht J., Dabrowski M., Mielke T., Fucini P., Yokoyama S., and Spahn C.M.T. Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. Mol. Cell 25 (2007) 751-764
-
(2007)
Mol. Cell
, vol.25
, pp. 751-764
-
-
Connell, S.R.1
Takemoto, C.2
Wilson, D.N.3
Wang, H.4
Murayama, K.5
Terada, T.6
Shirouzu, M.7
Rost, M.8
Schüler, M.9
Giesebrecht, J.10
Dabrowski, M.11
Mielke, T.12
Fucini, P.13
Yokoyama, S.14
Spahn, C.M.T.15
-
4
-
-
0029975088
-
SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields
-
Frank J., Radermacher R., Penczek P., Zhu J., Li Y., Ladjadj M., and Leith A. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116 (1996) 190-199
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 190-199
-
-
Frank, J.1
Radermacher, R.2
Penczek, P.3
Zhu, J.4
Li, Y.5
Ladjadj, M.6
Leith, A.7
-
5
-
-
0034053676
-
Three-dimensional cryoelectron microscopy of ribosomes
-
Frank J., Penczek P., Agrawal R.K., Grassucci R.A., and Heagle A.B. Three-dimensional cryoelectron microscopy of ribosomes. Methods Enzymol. 317 (2000) 276-291
-
(2000)
Methods Enzymol.
, vol.317
, pp. 276-291
-
-
Frank, J.1
Penczek, P.2
Agrawal, R.K.3
Grassucci, R.A.4
Heagle, A.B.5
-
6
-
-
14544282086
-
The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer
-
Frank J., Sengupta J., Gao H., Li W., Valle M., Zavialov A., and Ehrenberg M. The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer. FEBS Lett. 579 (2005) 939-963
-
(2005)
FEBS Lett.
, vol.579
, pp. 939-963
-
-
Frank, J.1
Sengupta, J.2
Gao, H.3
Li, W.4
Valle, M.5
Zavialov, A.6
Ehrenberg, M.7
-
7
-
-
0034598935
-
Solution structure of the E.coli 70S ribosome at 11.5 Å resolution
-
Gabashvili I.S., Agrawal R.K., Spahn C.M.T., Grassucci R.A., Svergun D.I., Frank J., and Penczek P. Solution structure of the E.coli 70S ribosome at 11.5 Å resolution. Cell 100 (2000) 537-549
-
(2000)
Cell
, vol.100
, pp. 537-549
-
-
Gabashvili, I.S.1
Agrawal, R.K.2
Spahn, C.M.T.3
Grassucci, R.A.4
Svergun, D.I.5
Frank, J.6
Penczek, P.7
-
8
-
-
39149091041
-
Preparation of macromolecular complexes for cryo-electron microscopy
-
Grassucci R.A., Taylor T.D., and Frank J. Preparation of macromolecular complexes for cryo-electron microscopy. Nature Prot. 2 (2007) 3238-3246
-
(2007)
Nature Prot.
, vol.2
, pp. 3238-3246
-
-
Grassucci, R.A.1
Taylor, T.D.2
Frank, J.3
-
9
-
-
39449126462
-
Visualization of macromolecular complexes using cryo-electron microscopy with FEI Tecnai TEMs
-
Grassucci R.A., Taylor T.D., and Frank J. Visualization of macromolecular complexes using cryo-electron microscopy with FEI Tecnai TEMs. Nature Prot. 3 (2007) 330-339
-
(2007)
Nature Prot.
, vol.3
, pp. 330-339
-
-
Grassucci, R.A.1
Taylor, T.D.2
Frank, J.3
-
10
-
-
0000313739
-
Exact filters for general geometry three-dimensional reconstruction
-
Harauz G., and van Heel M. Exact filters for general geometry three-dimensional reconstruction. Optik 73 (1986) 146-156
-
(1986)
Optik
, vol.73
, pp. 146-156
-
-
Harauz, G.1
van Heel, M.2
-
11
-
-
34548643898
-
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using multi-path simulated annealing optimization algorithm
-
Liu X., Jiang W., Jakana J., and Chiu W. Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using multi-path simulated annealing optimization algorithm. J. Struct. Biol. 160 (2007) 11-27
-
(2007)
J. Struct. Biol.
, vol.160
, pp. 11-27
-
-
Liu, X.1
Jiang, W.2
Jakana, J.3
Chiu, W.4
-
12
-
-
40049105503
-
De Novo backbone trace of GroEL from single particle electron cryomicroscopy
-
Ludtke S.J., Baker M., Chen D., Song J.-L., Chuang D., and Chiu W. De Novo backbone trace of GroEL from single particle electron cryomicroscopy. Structure 16 (2008) 441-448
-
(2008)
Structure
, vol.16
, pp. 441-448
-
-
Ludtke, S.J.1
Baker, M.2
Chen, D.3
Song, J.-L.4
Chuang, D.5
Chiu, W.6
-
13
-
-
0032479177
-
Escherichia coli 70S ribosome at 15 Å resolution by cryo-electron microscopy: localization of fmet-tRNAfMet and fitting of L1 protein
-
Malhotra A., Penczek P., Agrawal R.K., Gabashvili I.S., Grassucci R.A., Jünemann R., Burkhardt N., Nierhaus K.H., and Frank J. Escherichia coli 70S ribosome at 15 Å resolution by cryo-electron microscopy: localization of fmet-tRNAfMet and fitting of L1 protein. J. Mol. Biol. 280 (1998) 103-116
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 103-116
-
-
Malhotra, A.1
Penczek, P.2
Agrawal, R.K.3
Gabashvili, I.S.4
Grassucci, R.A.5
Jünemann, R.6
Burkhardt, N.7
Nierhaus, K.H.8
Frank, J.9
-
14
-
-
0028393194
-
The ribosome at improved resolution: New techniques for merging and orientation refinement in 3D cryoelectron microscopy of biological particles
-
Penczek P., Grassucci R.A., and Frank J. The ribosome at improved resolution: New techniques for merging and orientation refinement in 3D cryoelectron microscopy of biological particles. Ultramicroscopy 53 (1994) 251-270
-
(1994)
Ultramicroscopy
, vol.53
, pp. 251-270
-
-
Penczek, P.1
Grassucci, R.A.2
Frank, J.3
-
15
-
-
28444439746
-
Three-dimensional reconstruction with contrast transfer compensation from defocus series
-
Penczek P.A., Zhu J., Schroeder R., and Frank J. Three-dimensional reconstruction with contrast transfer compensation from defocus series. Scanning Microsc. 11 (1997) 147-154
-
(1997)
Scanning Microsc.
, vol.11
, pp. 147-154
-
-
Penczek, P.A.1
Zhu, J.2
Schroeder, R.3
Frank, J.4
-
16
-
-
0347985836
-
Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study
-
Rath B.K., and Frank J. Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study. J. Struct. Biol. 145 (2004) 84-90
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 84-90
-
-
Rath, B.K.1
Frank, J.2
-
17
-
-
0346816491
-
FindEM-a fast, efficient program for automatic selection of particles from electron micrographs
-
Roseman A.M. FindEM-a fast, efficient program for automatic selection of particles from electron micrographs. J. Struct. Biol. 145 (2004) 91-99
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 91-99
-
-
Roseman, A.M.1
-
18
-
-
0142042865
-
Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy
-
Rosenthal P.B., and Henderson R. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J. Mol. Biol. 333 (2003) 721-745
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 721-745
-
-
Rosenthal, P.B.1
Henderson, R.2
-
19
-
-
0019987933
-
The correlation averaging of a regularly arranged bacterial cell envelope protein
-
Saxton W.O., and Baumeister W. The correlation averaging of a regularly arranged bacterial cell envelope protein. J. Microsc. 127 (1982) 127-138
-
(1982)
J. Microsc.
, vol.127
, pp. 127-138
-
-
Saxton, W.O.1
Baumeister, W.2
-
20
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 Å resolution
-
Schuwirth B.S., Borovinskaya M.A., Hau C.W., Zhang W., Vila-Sanjurjo A., Holton J.M., and Cate J.D. Structures of the bacterial ribosome at 3.5 Å resolution. Science 310 (2005) 827-834
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.D.7
-
21
-
-
58049204808
-
-
Shaikh, T.R., Gao, H., Baxter, W., Asturias, F., Boisset, N., Leith, A., Frank, J., 2008a. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nature Prot., in press.
-
Shaikh, T.R., Gao, H., Baxter, W., Asturias, F., Boisset, N., Leith, A., Frank, J., 2008a. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nature Prot., in press.
-
-
-
-
22
-
-
51549085335
-
Particle verification for single-particle, reference-based reconstruction using multivariate data analysis and classification
-
Shaikh T.R., Trujillo R., LeBarron J.S., Baxter W.T., and Frank J. Particle verification for single-particle, reference-based reconstruction using multivariate data analysis and classification. J. Struct. Biol. 164 (2008) 41-48
-
(2008)
J. Struct. Biol.
, vol.164
, pp. 41-48
-
-
Shaikh, T.R.1
Trujillo, R.2
LeBarron, J.S.3
Baxter, W.T.4
Frank, J.5
-
23
-
-
33748775731
-
Automated cryo-EM data acquisition and analysis of 284 742 particles of GroEL
-
Stagg S.M., Lander G.C., Pulokas J., Fellmann D., Cheng A., Quispe J.D., Mallick S.P., Avila R.M., Carragher B., and Potter C.S. Automated cryo-EM data acquisition and analysis of 284 742 particles of GroEL. J. Struct. Biol. 155 (2006) 470-481
-
(2006)
J. Struct. Biol.
, vol.155
, pp. 470-481
-
-
Stagg, S.M.1
Lander, G.C.2
Pulokas, J.3
Fellmann, D.4
Cheng, A.5
Quispe, J.D.6
Mallick, S.P.7
Avila, R.M.8
Carragher, B.9
Potter, C.S.10
-
24
-
-
0034194374
-
Digitally collected cryo-electron micrographs for single particle reconstruction
-
Stewart P.L., Cary R.B., Peterson S.R., and Chiu C.Y. Digitally collected cryo-electron micrographs for single particle reconstruction. Microsc. Res. Tech. 49 (2000) 224-232
-
(2000)
Microsc. Res. Tech.
, vol.49
, pp. 224-232
-
-
Stewart, P.L.1
Cary, R.B.2
Peterson, S.R.3
Chiu, C.Y.4
-
25
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco L.G., Villa E., Mitra K., Frank J., and Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16 (2008) 673-683
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
26
-
-
0036646535
-
Cryo-EM reveals an active role for amino-acyl-tRNA in the accommodated state
-
Valle M., Sengupta J., Swami N.K., Grassucci R.A., Burkhardt N., Nierhaus K.H., Agrawal R.K., and Frank J. Cryo-EM reveals an active role for amino-acyl-tRNA in the accommodated state. EMBO J. 21 (2002) 3557-3567
-
(2002)
EMBO J.
, vol.21
, pp. 3557-3567
-
-
Valle, M.1
Sengupta, J.2
Swami, N.K.3
Grassucci, R.A.4
Burkhardt, N.5
Nierhaus, K.H.6
Agrawal, R.K.7
Frank, J.8
-
27
-
-
0242407184
-
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy
-
Valle M., Zavialov A., Li W., Stagg S.M., Sengupta J., Nielsen R.C., Nissen P., Harvey S.C., Ehrenberg M., and Frank J. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nat. Struct. Biol. 10 (2003) 899-906
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 899-906
-
-
Valle, M.1
Zavialov, A.2
Li, W.3
Stagg, S.M.4
Sengupta, J.5
Nielsen, R.C.6
Nissen, P.7
Harvey, S.C.8
Ehrenberg, M.9
Frank, J.10
-
28
-
-
11144246307
-
Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm
-
Yang C., Ng E.G., and Penczek P.A. Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm. J. Struct. Biol. 149 (2005) 53-64
-
(2005)
J. Struct. Biol.
, vol.149
, pp. 53-64
-
-
Yang, C.1
Ng, E.G.2
Penczek, P.A.3
-
29
-
-
43749092377
-
-
Yu, X., Jin, L., Zhou, Z.H., 2008. 3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy. Nature advance online publication doi:10.1038/nature06893.
-
Yu, X., Jin, L., Zhou, Z.H., 2008. 3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy. Nature advance online publication doi:10.1038/nature06893.
-
-
-
-
30
-
-
41149086034
-
Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction
-
Zhang X., Settembre E., Xu C., Dormitzer P.R., Bellamy R., Harrison S.C., and Grigorieff N. Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction. PNAS 105 (2008) 1867-1872
-
(2008)
PNAS
, vol.105
, pp. 1867-1872
-
-
Zhang, X.1
Settembre, E.2
Xu, C.3
Dormitzer, P.R.4
Bellamy, R.5
Harrison, S.C.6
Grigorieff, N.7
-
31
-
-
0030960710
-
Three-dimensional reconstruction with contrast transfer-function correction from energy-filtered cryo-electron micrographs-procedures and applications to the 70S Escherichia coli ribosome
-
Zhu J., Penczek P., Schroeder R., and Frank J. Three-dimensional reconstruction with contrast transfer-function correction from energy-filtered cryo-electron micrographs-procedures and applications to the 70S Escherichia coli ribosome. J. Struct. Biol. 118 (1997) 197-219
-
(1997)
J. Struct. Biol.
, vol.118
, pp. 197-219
-
-
Zhu, J.1
Penczek, P.2
Schroeder, R.3
Frank, J.4
|