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Volumn 72, Issue 9-10, 2010, Pages 781-797

Retention characteristics of peptides in RP-LC: Peptide retention prediction

Author keywords

Peptides; Retention indices; Retention prediction; Reversed phase liquid chromatography; Review

Indexed keywords

AMINO ACID; PEPTIDE; PROTEIN;

EID: 78149409823     PISSN: 00095893     EISSN: 16121112     Source Type: Journal    
DOI: 10.1365/s10337-010-1721-8     Document Type: Review
Times cited : (18)

References (211)
  • 2
    • 33744803974 scopus 로고    scopus 로고
    • Hydrophobic contribution of amino acids in peptides measured by hydrophobic interaction chromatography
    • DOI 10.1021/jp055382f
    • CI Liu KY Hsu RC Ruaan 2006 J Phys Chem B 110 9148 9154 10.1021/jp055382f (Pubitemid 43829008)
    • (2006) Journal of Physical Chemistry B , vol.110 , Issue.18 , pp. 9148-9154
    • Liu, C.-I.1    Hsu, K.-Y.2    Ruaan, R.-C.3
  • 8
    • 33645471923 scopus 로고    scopus 로고
    • 10.1002/jssc.200500331
    • T Baczek 2006 J Sep Sci 29 547 554 10.1002/jssc.200500331
    • (2006) J Sep Sci , vol.29 , pp. 547-554
    • Baczek, T.1
  • 12
    • 33746793216 scopus 로고    scopus 로고
    • Context-dependent effects on the hydrophilicity/hydrophobicity of side-chains during reversed-phase high-performance liquid chromatography: Implications for prediction of peptide retention behaviour
    • DOI 10.1016/j.chroma.2006.05.063, PII S0021967306010892
    • CT Mant RS Hodges 2006 J Chromatogr A 1125 211 219 10.1016/j.chroma.2006. 05.063 (Pubitemid 44175998)
    • (2006) Journal of Chromatography A , vol.1125 , Issue.2 , pp. 211-219
    • Mant, C.T.1    Hodges, R.S.2
  • 18
    • 77957011343 scopus 로고
    • Retention and selectivity in liquid chromatography
    • Smith RM (ed) Elsevier, Amsterdam
    • Valko K (1995) In: Smith RM (ed) Retention and selectivity in liquid chromatography. Prediction, standardization and phase comparisons. Elsevier, Amsterdam, pp 47-92
    • (1995) Prediction, Standardization and Phase Comparisons , pp. 47-92
    • Valko, K.1
  • 19
    • 33845324262 scopus 로고
    • Retention and selectivity in liquid chromatography
    • Smith RM (ed) Elsevier, Amsterdam
    • Smith RM (1995) In: Smith RM (ed) Retention and selectivity in liquid chromatography. Prediction, standardization and phase comparisons. Elsevier, Amsterdam, pp 93-144
    • (1995) Prediction, Standardization and Phase Comparisons , pp. 93-144
    • Smith, R.M.1
  • 35
    • 77957004118 scopus 로고
    • Retention and selectivity in liquid chromatography
    • Smith RM (ed) Elsevier, Amsterdam
    • Kuronen P (1995) In: Smith RM (ed) Retention and selectivity in liquid chromatography. Prediction, standardization and phase comparisons. Elsevier, Amsterdam, pp 209-233
    • (1995) Prediction, Standardization and Phase Comparisons , pp. 209-233
    • Kuronen, P.1
  • 57
    • 8544244564 scopus 로고
    • Retention and selectivity in liquid chromatography
    • Smith RM (ed) Elsevier, Amsterdam
    • Bolck A, Smilde AK (1995) In: Smith RM (ed) Retention and selectivity in liquid chromatography. Prediction, standardization and phase comparisons. Elsevier, Amsterdam, pp 403-449
    • (1995) Prediction, Standardization and Phase Comparisons , pp. 403-449
    • Bolck, A.1    Smilde, A.K.2
  • 58
    • 77956993034 scopus 로고
    • Retention and selectivity in liquid chromatography
    • Smith RM (ed) Elsevier, Amsterdam
    • Bogusz M (1995) In: Smith RM (ed) Retention and selectivity in liquid chromatography. Prediction, standardization and phase comparisons. Elsevier, Amsterdam, pp 171-207
    • (1995) Prediction, Standardization and Phase Comparisons. , pp. 171-207
    • Bogusz, M.1
  • 67
    • 39849105680 scopus 로고    scopus 로고
    • Statistical learning of peptide retention behavior in chromatographic separations: A new kernel-based approach for computational proteomics
    • DOI 10.1186/1471-2105-8-468
    • N Pfeifer A Leinenbach CG Huber O Kohlbacher 2007 BMC Bioinf 8 468 10.1186/1471-2105-8-468 (Pubitemid 351314938)
    • (2007) BMC Bioinformatics , vol.8 , pp. 468
    • Pfeifer, N.1    Leinenbach, A.2    Huber, C.G.3    Kohlbacher, O.4
  • 71
  • 80
    • 47049091146 scopus 로고    scopus 로고
    • Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments
    • DOI 10.1093/bioinformatics/btn240
    • K Shinoda M Tomita Y Ishihama 2008 Bioinform 24 1590 1595 10.1093/bioinformatics/btn240 (Pubitemid 351966157)
    • (2008) Bioinformatics , vol.24 , Issue.14 , pp. 1590-1595
    • Shinoda, K.1    Tomita, M.2    Ishihama, Y.3
  • 81
    • 68549083763 scopus 로고    scopus 로고
    • 10.1093/bioinformatics/btp343
    • N Hoffmann J Stoye 2009 Bioinformatics 25 2080 2081 10.1093/ bioinformatics/btp343
    • (2009) Bioinformatics , vol.25 , pp. 2080-2081
    • Hoffmann, N.1    Stoye, J.2
  • 90
    • 64249139249 scopus 로고    scopus 로고
    • 10.1002/cem.1214
    • IG Zenkevich 2009 J Chemom 23 179 187 10.1002/cem.1214
    • (2009) J Chemom , vol.23 , pp. 179-187
    • Zenkevich, I.G.1
  • 92
    • 41549145712 scopus 로고    scopus 로고
    • Data mining of plasma peptide chromatograms for biomarkers of air contaminant exposures
    • DOI 10.1186/1477-5956-6-6
    • S Karthikeyan P Kumarathasan R Vincent 2008 Proteome Sci 6 6 10.1186/1477-5956-6-6 (Pubitemid 351460439)
    • (2008) Proteome Science , vol.6 , pp. 6
    • Karthikeyan, S.1    Kumarathasan, P.2    Vincent, R.3
  • 103
    • 33947202203 scopus 로고    scopus 로고
    • Effects of column length, particle size, gradient length and flow rate on peak capacity of nano-scale liquid chromatography for peptide separations
    • DOI 10.1016/j.chroma.2007.02.016, PII S0021967307002750
    • HJ Liu JW Finch MJ Lavallee RA Collamati CC Benevides JC Gebler 2007 J Chromatogr A 1147 30 36 10.1016/j.chroma.2007.02.016 (Pubitemid 46428262)
    • (2007) Journal of Chromatography A , vol.1147 , Issue.1 , pp. 30-36
    • Liu, H.1    Finch, J.W.2    Lavallee, M.J.3    Collamati, R.A.4    Benevides, C.C.5    Gebler, J.C.6
  • 104
    • 36148929818 scopus 로고    scopus 로고
    • Comparative evaluation of high-performance liquid chromatography stationary phases used for the separation of peptides in terms of quantitative structure-retention relationships
    • DOI 10.1016/j.chroma.2007.10.002, PII S0021967307017001
    • M Michel T Baczek S Studzinska K Bodzioch T Jonsson R Kaliszan B Buszewski 2007 J Chromatogr A 1175 49 54 10.1016/j.chroma.2007.10.002 (Pubitemid 350116825)
    • (2007) Journal of Chromatography A , vol.1175 , Issue.1 , pp. 49-54
    • Michel, M.1    Baczek, T.2    Studzinska, S.3    Bodzioch, K.4    Jonsson, T.5    Kaliszan, R.6    Buszewski, B.7
  • 107
    • 3242681739 scopus 로고    scopus 로고
    • Selectivity differences in the separation of amphipathic α-helical peptides during reversed-phase liquid chromatography at pHs 2.0 and 7.0: Effects of different packings, mobile phase conditions and temperature
    • DOI 10.1016/j.chroma.2004.04.028, PII S0021967304005886
    • Y Chen CT Mant RS Hodges 2004 J Chromatogr A 1043 99 111 10.1016/j.chroma.2004.04.028 (Pubitemid 38952781)
    • (2004) Journal of Chromatography A , vol.1043 , Issue.1 , pp. 99-111
    • Chen, Y.1    Mant, C.T.2    Hodges, R.S.3
  • 108
    • 3242674439 scopus 로고    scopus 로고
    • Optimum concentration of trifluoroacetic acid for reversed-phase liquid chromatography of peptides revisited
    • DOI 10.1016/j.chroma.2004.03.070, PII S0021967304005412
    • Y Chen AR Mehok CT Mant RS Hodges 2004 J Chromatogr A 1043 9 18 10.1016/j.chroma.2004.03.070 (Pubitemid 38952770)
    • (2004) Journal of Chromatography A , vol.1043 , Issue.1 , pp. 9-18
    • Chen, Y.1    Mehok, A.R.2    Mant, C.T.3    Hodges, R.S.4
  • 110
    • 0042120983 scopus 로고    scopus 로고
    • Temperature selectivity effects in reversed-phase liquid chromatography due to conformation differences between helical and non-helical peptides
    • DOI 10.1016/S0021-9673(03)00877-X
    • YX Chen CT Mant RS Hodges 2003 J Chromatogr A 1010 45 61 10.1016/s0021-9673(03)00877-x (Pubitemid 36962915)
    • (2003) Journal of Chromatography A , vol.1010 , Issue.1 , pp. 45-61
    • Chen, Y.1    Mant, C.T.2    Hodges, R.S.3
  • 111
    • 33747503907 scopus 로고    scopus 로고
    • Influence of mobile phase gradients on the retention and separation of peptides from a cytochrome-c digest by reversed-phase liquid chromatography
    • DOI 10.1365/s10337-006-0839-1
    • LA Riddle G Guiochon 2006 Chromatographia 64 121 127 10.1365/s10337-006- 0839-1 (Pubitemid 44258068)
    • (2006) Chromatographia , vol.64 , Issue.3-4 , pp. 121-127
    • Riddle, L.A.1    Guiochon, G.2
  • 116
    • 26844432365 scopus 로고    scopus 로고
    • Prediction of peptide retention in RP-LC
    • DOI 10.1365/s10337-005-0644-2
    • Y Wang X Gu J Zhang XM Zhang 2005 Chromatographia 62 385 392 10.1365/s10337-005-0644-2 (Pubitemid 41455818)
    • (2005) Chromatographia , vol.62 , Issue.7-8 , pp. 385-392
    • Wang, Y.1    Gu, X.2    Zhang, J.3    Zhang, X.-M.4
  • 117
    • 33846191632 scopus 로고    scopus 로고
    • Requirements for prediction of peptide retention time in reversed-phase high-performance liquid chromatography: Hydrophilicity/hydrophobicity of side-chains at the N- and C-termini of peptides are dramatically affected by the end-groups and location
    • DOI 10.1016/j.chroma.2006.12.024, PII S0021967306023156
    • B Tripet D Cepeniene JM Kovacs CT Mant OV Krokhin RS Hodges 2007 J Chromatogr A 1141 212 225 10.1016/j.chroma.2006.12.024 (Pubitemid 46096969)
    • (2007) Journal of Chromatography A , vol.1141 , Issue.2 , pp. 212-225
    • Tripet, B.1    Cepeniene, D.2    Kovacs, J.M.3    Mant, C.T.4    Krokhin, O.V.5    Hodges, R.S.6
  • 118
    • 33746341805 scopus 로고    scopus 로고
    • Quantitation of the nearest-neighbour effects of amino acid side-chains that restrict conformational freedom of the polypeptide chain using reversed-phase liquid chromatography of synthetic model peptides with l- and d-amino acid substitutions
    • DOI 10.1016/j.chroma.2006.04.092, PII S0021967306009058
    • JA Kovacs CT Mant SC Kwok DJ Osguthorpe RS Hodges 2006 J Chromatogr A 1123 212 224 10.1016/j.chroma.2006.04.092 (Pubitemid 44118308)
    • (2006) Journal of Chromatography A , vol.1123 , Issue.2 , pp. 212-224
    • Kovacs, J.M.1    Mant, C.T.2    Kwok, S.C.3    Osguthorpe, D.J.4    Hodges, R.S.5
  • 122
    • 0043135171 scopus 로고    scopus 로고
    • Temperature profiling of polypeptides in reversed-phase liquid chromatography: I. Monitoring of dimerization and unfolding of amphipathic α-helical peptides
    • DOI 10.1016/S0021-9673(03)00621-6
    • CT Mant Y Chen RS Hodges 2003 J Chromatogr A 1009 29 43 10.1016/s0021-9673(03)00621-6 (Pubitemid 36966669)
    • (2003) Journal of Chromatography A , vol.1009 , Issue.1-2 , pp. 29-43
    • Mant, C.T.1    Chen, Y.2    Hodges, R.S.3
  • 131
    • 61349150487 scopus 로고    scopus 로고
    • 10.1002/pmic.200800544
    • T Baczek R Kaliszan 2009 Proteomics 9 835 847 10.1002/pmic.200800544
    • (2009) Proteomics , vol.9 , pp. 835-847
    • Baczek, T.1    Kaliszan, R.2
  • 137
    • 78149411221 scopus 로고
    • Retention and selectivity in liquid chromatography
    • Smith RM (ed) Elsevier, Amsterdam
    • Smith RM (ed) (1995) Retention and selectivity in liquid chromatography. Prediction, standardization and phase comparisons. Elsevier, Amsterdam
    • (1995) Prediction, Standardization and Phase Comparisons
  • 143
    • 34548863900 scopus 로고    scopus 로고
    • Investigation of retention behaviour of non-steroidal anti-inflammatory drugs in high-performance liquid chromatography by using quantitative structure-retention relationships
    • DOI 10.1016/j.aca.2007.08.026, PII S0003267007013906
    • G Carlucci AA D'Archivio MA Maggi P Mazzeo F Ruggieri 2007 Anal Chim Acta 601 68 76 10.1016/j.aca.2007.08.026 (Pubitemid 47451315)
    • (2007) Analytica Chimica Acta , vol.601 , Issue.1 , pp. 68-76
    • Carlucci, G.1    D'Archivio, A.A.2    Maggi, M.A.3    Mazzeo, P.4    Ruggieri, F.5
  • 145
    • 33747622807 scopus 로고    scopus 로고
    • Prediction of retention of nucleic compounds based on a QSPR model
    • DOI 10.1365/s10337-006-0840-8
    • J Zheng Y Polyakova KH Row 2006 Chromatographia 64 129 137 10.1365/s10337-006-0840-8 (Pubitemid 44261854)
    • (2006) Chromatographia , vol.64 , Issue.3-4 , pp. 129-137
    • Zheng, J.1    Polyakova, Y.2    Row, K.H.3
  • 163
    • 33751208935 scopus 로고    scopus 로고
    • Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: Application to 300- and 100-A pore size C18 sorbents
    • DOI 10.1021/ac060777w
    • OV Krokhin 2006 Anal Chem 78 7785 7795 10.1021/ac060777w (Pubitemid 44788723)
    • (2006) Analytical Chemistry , vol.78 , Issue.22 , pp. 7785-7795
    • Krokhin, O.V.1
  • 168
    • 13844307725 scopus 로고    scopus 로고
    • Prediction of high-performance liquid chromatography retention of peptides with the use of quantitative structure-retention relationships
    • DOI 10.1002/pmic.200400973
    • R Kaliszan T Baczek A Cimochowska P Juszczyk K Wisniewska Z Grzonka 2005 Proteomics 5 409 415 10.1002/pmic.200400973 (Pubitemid 40262057)
    • (2005) Proteomics , vol.5 , Issue.2 , pp. 409-415
    • Kaliszan, R.1    Baczek, T.2    Cimochowska, A.3    Juszczyk, P.4    Wisniewska, K.5    Grzonka, Z.6
  • 169
    • 34547495638 scopus 로고    scopus 로고
    • QSRR: Quantitative structure-(chromatographic) retention relationships
    • DOI 10.1021/cr068412z
    • R Kaliszan 2007 Chem Rev 107 3212 3246 10.1021/cr068412z (Pubitemid 47177110)
    • (2007) Chemical Reviews , vol.107 , Issue.7 , pp. 3212-3246
    • Kaliszan, R.1
  • 172
    • 0035891173 scopus 로고    scopus 로고
    • Prediction of protein retention in ion-exchange systems using molecular descriptors obtained from crystal structure
    • DOI 10.1021/ac010797s
    • CB Mazza N Sukumar CM Breneman SM Cramer 2001 Anal Chem 73 5457 5461 10.1021/ac010797s (Pubitemid 33108555)
    • (2001) Analytical Chemistry , vol.73 , Issue.22 , pp. 5457-5461
    • Mazza, C.B.1    Sukumar, N.2    Breneman, C.M.3    Cramer, S.M.4
  • 185
    • 31844439375 scopus 로고    scopus 로고
    • Predicting the behaviour of proteins in hydrophobic interaction chromatography. 1: Using the hydrophobic imbalance (HI) to describe their surface amino acid distribution
    • DOI 10.1016/j.chroma.2005.12.032, PII S002196730502426X
    • JC Salgado I Rapaport JA Asenjo 2006 J Chromatogr A 1107 110 119 10.1016/j.chroma.2005.12.032 (Pubitemid 43184213)
    • (2006) Journal of Chromatography A , vol.1107 , Issue.1-2 , pp. 110-119
    • Salgado, J.C.1    Rapaport, I.2    Asenjo, J.A.3
  • 186
    • 31844439375 scopus 로고    scopus 로고
    • Predicting the behaviour of proteins in hydrophobic interaction chromatography: 2. Using a statistical description of their surface amino acid distribution
    • DOI 10.1016/j.chroma.2005.12.033, PII S0021967305024271
    • JC Salgado I Rapaport JA Asenjo 2006 J Chromatogr A 1107 120 129 10.1016/j.chroma.2005.12.033 (Pubitemid 43184214)
    • (2006) Journal of Chromatography A , vol.1107 , Issue.1-2 , pp. 120-129
    • Salgado, J.C.1    Rapaport, I.2    Asenjo, J.A.3
  • 188
    • 0037630879 scopus 로고    scopus 로고
    • Erratum: Mathematical correlations for predicting protein retention times in hydrophobic interaction chromatography (Journal of Chromatography A (2002) 978 (71-79) PII: S0021967302013584)
    • DOI 10.1016/S0021-9673(03)00772-6
    • ME Lienqueo A Mahn JA Asenjo 2003 J Chromatogr A 1003 223 10.1016/S0021-9673(03)00772-6 (Pubitemid 36829266)
    • (2003) Journal of Chromatography A , vol.1003 , Issue.1-2 , pp. 223
    • Lienqueo, M.E.1    Mahn, A.2    Asenjo, J.A.3
  • 194
    • 11144334589 scopus 로고    scopus 로고
    • Definition and characterization of a 'trypsinosome' from specific peptide characteristics by Nano-HPLC-MS/MS and in silico analysis of complex protein mixtures
    • DOI 10.1021/pr049909x
    • T Le Bihan MD Robinson II Stewart D Figeys 2004 J Proteome Res 3 1138 1148 10.1021/pr049909x (Pubitemid 40040367)
    • (2004) Journal of Proteome Research , vol.3 , Issue.6 , pp. 1138-1148
    • Le Bihan, T.1    Robinson, M.D.2    Stewart, I.I.3    Figeys, D.4
  • 196
    • 34548041670 scopus 로고    scopus 로고
    • Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions
    • DOI 10.1021/ac070262k
    • AA Klammer XH Yi MJ MacCoss WS Noble 2007 Anal Chem 79 6111 6118 10.1021/ac070262k (Pubitemid 47282320)
    • (2007) Analytical Chemistry , vol.79 , Issue.16 , pp. 6111-6118
    • Klammer, A.A.1    Yi, X.2    MacCoss, M.J.3    Noble, W.S.4


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