Protein identification by liquid chromatography-mass spectrometry using retention time prediction

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 803, Issue 1, 2004, Pages 131-135

  Palmblad, Magnus ^a,b   Ramström, Margareta ^a,c   Bailey, Christopher G ^b   McCutchen Maloney, Sandra L ^b   Bergquist, Jonas ^c   Zeller, Loreen C ^b  

^a UPPSALA UNIVERSITY   (Sweden)

^b LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^c UPPSALA UNIVERSITY   (Sweden)

Author keywords

Protein identification; Retention time prediction

Indexed keywords

ENZYMES; GENES; MASS SPECTROMETERS; MASS SPECTROMETRY; SEPARATION;

CHROMATOGRAPHIC SEPARATION; DYNAMIC RANGE;

LIQUID CHROMATOGRAPHY;

ENZYME; PEPTIDE; PROTEIN;

ARTICLE; DYNAMICS; GENOME; HUMAN; INFORMATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETER; MASS SPECTROMETRY; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; SAMPLING; TECHNIQUE; TIME;

CHROMATOGRAPHY, LIQUID; MASS SPECTROMETRY; PROTEINS;

EID: 1542509434     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2003.11.007     Document Type: Article

References (35)

1. Patterson S.D., Aebersold R. Electrophoresis. 16:1995;1791.
2. Shevchenko A., Jensen O.N., Podtelejnikov A.V., Sagliocco F., Wilm M., Vorm O., Mortensen P., Boucherie H., Mann M. Proc. Natl. Acad. Sci. U.S.A. 93:1996;14440.
3. Smith R.D., Loo J.A., Barinaga C.J., Edmonds C.G., Udseth H.R. J. Chromatogr. 480:1989;211.
4. Smith R.D., Pasa-Tolic L., Lipton M.S., Jensen P.K., Anderson G.A., Shen Y., Conrads T.P., Udseth H.R., Harkewicz R., Belov M.E., Masselon C., Veenstra T.D. Electrophoresis. 22:2001;1652.
5. Whitehouse C.M., Dreyer R.N., Yamashita M., Fenn J.B. Anal. Chem. 57:1985;675.
6. Stacey C.C., Kruppa G.H., Watson C.H., Wronka J., Laukien F.H., Banks J.F., Whitehouse C.M. Rapid Commun. Mass Spectrom. 8:1994;513.
7. R.D. Voyksner, in: R.B. Cole (Ed.), Electrospray Ionization Mass Spectrometry, Wiley, New York, 1997, pp. 323-341.
8. Jensen P.K., Pasa-Tolic L., Peden K.K., Martinovic S., Lipton M.S., Anderson G.A., Tolic N., Wong K.K., Smith R.D. Electrophoresis. 21:2000;1372.
9. Shen Y., Tolic N., Zhao R., Pasa-Tolic L., Li L., Berger S.J., Harkewicz R., Anderson G.A., Belov M.E., Smith R.D. Anal. Chem. 73:2001;3011.
10. Conrads T.P., Alving K., Veenstra T.D., Belov M.E., Anderson G.A., Anderson D.J., Lipton M.S., Pasa-Tolic L., Udseth H.R., Chrisler W.B., Thrall B.D., Smith R.D. Anal. Chem. 73:2001;2132.
11. Smith R.D., Anderson G.A., Lipton M.S., Masselon C., Pasa-Tolic L., Shen Y., Udseth H.R. Omics. 6:2002;61.
12. Bergquist J., Palmblad M., Wetterhall M., Håkansson P., Markides K.E. Mass Spectrom. Rev. 21:2002;2.
13. Wetterhall M., Palmblad M., Håkansson P., Markides K.E., Bergquist J. J. Prot. Res. 1:2002;361.
14. Ramström M., Palmblad M., Markides K.E., Håkansson P., Bergquist J. Proteomics. 3:2003;184.
15. Belov M.E., Nikolaev E.N., Anderson G.A., Udseth H.R., Conrads T.P., Veenstra T.D., Masselon C.D., Gorshkov M.V., Smith R.D. Anal. Chem. 73:2001;253.
16. J. Frenz, W.S. Hancock, W.J. Henzel, C. Horváth, in HPLC of Biological Macromolecules: Methods and Applications, Marcel Dekker, New York, 1990, p. 145.
17. Cornette J.L., Cease K.B., Margalit H., Spouge J.L., Berzofsky J.A., DeLisi C. J. Mol. Biol. 195:1987;659.
18. Zubarev R.A., Håkansson P., Sundqvist B.U.R. Anal. Chem. 68:1996;4060.
19. Conrads T.P., Anderson G.A., Veenstra T.D., Pasa-Tolic L., Smith R.D. Anal. Chem. 72:2000;3349.
20. Bruce J.E., Anderson G.A., Wen J., Harkewicz R., Smith R.D. Anal. Chem. 71:1999;2595.
21. Palmblad M., Ramström M., Markides K.E., Håkansson P., Bergquist J. Anal. Chem. 74:2002;5826.
22. Petritis K., Kangas L.J., Ferguson P.L., Anderson G.A., Pasa-Tolic L., Lipton M.S., Auberry K.J., Strittmatter E.F., Shen Y., Zhao R., Smith R.D. Anal. Chem. 75:2003;1039.
23. Palmblad M., Håkansson K., Håkansson P., Feng X., Cooper H.J., Giannakopulos A.E., Green P.S., Derrick P.J. Eur. Mass Spectrom. 6:2000;267.
24. Meek J.L. Proc. Natl. Acad. Sci. U.S.A. 77:1980;1632.
25. Guo D.C., Mant C.T., Hodges R.S. J. Chromatogr. 386:1987;205.
26. Hearn M.T., Aguilar M.I., Mant C.T., Hodges R.S. J. Chromatogr. 438:1988;197.
27. Hodges R.S., Parker J.M., Mant C.T., Sharma R.R. J. Chromatogr. 458:1988;147.
28. Mant C.T., Zhou N.E., Hodges R.S. J. Chromatogr. 476:1989;363.
29. Sanz-Nebot V., Toro I., Benavente F., Barbosa J. J. Chromatogr. A. 942:2002;145.
30. http://www.cygwin.com.
31. Palmblad M., Wetterhall M., Markides K., Håkansson P., Bergquist J. Rapid Commun. Mass Spectrom. 14:2000;1029.
32. Rost B. J. Struct. Biol. 134:2001;204.
33. Grossman P.D., Colburn J.C., Lauer H.H. Anal. Biochem. 179:1989;28.
34. Cifuentes A., Poppe H. Electrophoresis. 18:1997;2362.
35. Castagnola M., Rossetti D.V., Corda M., Pellegrini M., Misiti F., Olianas A., Giardina B., Messana I. Electrophoresis. 19:1998;2273.