-
1
-
-
8844256267
-
Expression, purification and structural characterization of the scaffoldin hydrophilic X-module from the cellulosome of Clostridium thermocellum
-
Adams, J. J., Jang, C. J., Spencer, H. L., Elliott, M., and Smith, S. P. (2004). Expression, purification and structural characterization of the scaffoldin hydrophilic X-module from the cellulosome of Clostridium thermocellum. Protein Expr. Purif. 38, 258-263.
-
(2004)
Protein Expr. Purif
, vol.38
, pp. 258-263
-
-
Adams, J.J.1
Jang, C.J.2
Spencer, H.L.3
Elliott, M.4
Smith, S.P.5
-
2
-
-
31044452624
-
Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex
-
Adams, J. J., Pal, G., Jia, Z., and Smith, S. P. (2006). Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex. Proc. Natl. Acad. Sci. USA. 103, 305-310.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 305-310
-
-
Adams, J.J.1
Pal, G.2
Jia, Z.3
Smith, S.P.4
-
3
-
-
33745160404
-
Large-scale identification of protein-protein interaction of Escherichia coli K-12
-
Arifuzzaman, M., Maeda, M., Itoh, A., Nishikata, K., Takita, C., Saito, R., Ara, T., Nakahigashi, K., Huang, H. C., Hirai, A., Tsuzuki, K., Nakamura, S., taf-Ul-Amin, M., Oshima, T., Baba, T., Yamamoto, N., Kawamura, T., Ioka-Nakamichi, T., Kitagawa, M., Tomita,M., Kanaya, S., Wada,C., andMori, H. (2006). Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16, 686-691.
-
(2006)
Genome Res
, vol.16
, pp. 686-691
-
-
Arifuzzaman, M.1
Maeda, M.2
Itoh, A.3
Nishikata, K.4
Takita, C.5
Saito, R.6
Ara, T.7
Nakahigashi, K.8
Huang, H.C.9
Hirai, A.10
Tsuzuki, K.11
Nakamura, S.12
Taf-Ul-Amin, M.13
Oshima, T.14
Baba, T.15
Yamamoto, N.16
Kawamura, T.17
Ioka-Nakamichi, T.18
Kitagawa, M.19
Tomita, M.20
Kanaya, S.21
Wada, C.22
Mori, H.23
more..
-
4
-
-
1042275583
-
A dissection of specific and non-specific protein-protein interfaces
-
Bahadur, R. P., Chakrabarti, P., Rodier, F., and Janin, J. (2004). A dissection of specific and non-specific protein-protein interfaces. J. Mol. Biol. 336, 943-955.
-
(2004)
J. Mol. Biol
, vol.336
, pp. 943-955
-
-
Bahadur, R.P.1
Chakrabarti, P.2
Rodier, F.3
Janin, J.4
-
5
-
-
0034919243
-
Dipolar couplings in macromolecular structure determination
-
Bax, A., Kontaxis, G., and Tjandra, N. (2001). Dipolar couplings in macromolecular structure determination. Methods Enzymol. 339, 127-174.
-
(2001)
Methods Enzymol
, vol.339
, pp. 127-174
-
-
Bax, A.1
Kontaxis, G.2
Tjandra, N.3
-
6
-
-
4143139469
-
The cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides
-
Bayer, E. A., Belaich, J. P., Shoham, Y., and Lamed, R. (2004). The cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides. Annu. Rev. Microbiol. 58, 521-54. 521-554.
-
(2004)
Annu. Rev. Microbiol
, vol.58
, Issue.54-521
, pp. 521-554
-
-
Bayer, E.A.1
Belaich, J.P.2
Shoham, Y.3
Lamed, R.4
-
7
-
-
0034503642
-
Solving the generalized indirect Fourier transformation (GIFT) by Boltzmann simplex simulated annealing (BSSA
-
Bergmann, A., Fritz, G., and Glatter, O. (2000). Solving the generalized indirect Fourier transformation (GIFT) by Boltzmann simplex simulated annealing (BSSA). J. Appl. Crystal. 33, 1212-1216.
-
(2000)
J. Appl. Crystal
, vol.33
, pp. 1212-1216
-
-
Bergmann, A.1
Fritz, G.2
Glatter, O.3
-
8
-
-
34548024598
-
Integrating physical and genetic maps: From genomes to interaction networks
-
Beyer, A., Bandyopadhyay, S., and Ideker, T. (2007). Integrating physical and genetic maps: From genomes to interaction networks. Nat. Rev. Genet. 8, 699-710.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 699-710
-
-
Beyer, A.1
Bandyopadhyay, S.2
Ideker, T.3
-
9
-
-
7044222771
-
The complex between hydrogenase-maturation proteins HypC and HypD is an intermediate in the supply of cyanide to the active site iron of [NiFe]-hydrogenases
-
Blokesch, M., Albracht, S. P., Matzanke, B. F., Drapal, N. M., Jacobi, A., and Bock, A. (2004a). The complex between hydrogenase-maturation proteins HypC and HypD is an intermediate in the supply of cyanide to the active site iron of [NiFe]-hydrogenases. J. Mol. Biol. 344, 155-167.
-
(2004)
J. Mol. Biol
, vol.344
, pp. 155-167
-
-
Blokesch, M.1
Albracht, S.P.2
Matzanke, B.F.3
Drapal, N.M.4
Jacobi, A.5
Bock, A.6
-
10
-
-
4344582395
-
Analysis of the transcarbamoylation-dehydration reaction catalyzed by the hydrogenase maturation proteins HypF and HypE
-
Blokesch, M., Paschos, A., Bauer, A., Reissmann, S., Drapal, N., and Bock, A. (2004b). Analysis of the transcarbamoylation-dehydration reaction catalyzed by the hydrogenase maturation proteins HypF and HypE. Eur. J. Biochem. 271, 3428-3436.
-
(2004)
Eur. J. Biochem
, vol.271
, pp. 3428-3436
-
-
Blokesch, M.1
Paschos, A.2
Bauer, A.3
Reissmann, S.4
Drapal, N.5
Bock, A.6
-
11
-
-
0035449350
-
Translational misreading: A tRNA modification counteracts a 2 ribosomal frameshift
-
Bregeon, D., Colot, V., Radman, M., and Taddei, F. (2001). Translational misreading: A tRNA modification counteracts a 2 ribosomal frameshift. Genes Dev. 15, 2295-2306.
-
(2001)
Genes Dev
, vol.15
, pp. 2295-2306
-
-
Bregeon, D.1
Colot, V.2
Radman, M.3
Taddei, F.4
-
12
-
-
0031921626
-
The NMR structure of the RNA binding domain of E. coli rho factor suggests possible RNA-protein interactions
-
Briercheck, D. M., Wood, T. C., Allison, T. J., Richardson, J. P., and Rule, G. S. (1998). The NMR structure of the RNA binding domain of E. coli rho factor suggests possible RNA-protein interactions. Nat. Struct. Biol. 5, 393-399.\
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 393-399
-
-
Briercheck, D.M.1
Wood, T.C.2
Allison, T.J.3
Richardson, J.P.4
Rule, G.S.5
-
13
-
-
0019472612
-
Blue ghosts: A new method for isolating amber mutants defective in essential genes of Escherichia coli
-
Brown, S., Brickman, E. R., and Beckwith, J. (1981). Blue ghosts: A new method for isolating amber mutants defective in essential genes of Escherichia coli. J. Bacteriol.146, 422-425.
-
(1981)
J. Bacteriol
, vol.146
, pp. 422-425
-
-
Brown, S.1
Brickman, E.R.2
Beckwith, J.3
-
14
-
-
50849098825
-
ESGA: E. coli synthetic genetic array analysis
-
Butland, G., Babu, M., Diaz-Mejia, J. J., Bohdana, F., Phanse, S., Gold, B., Yang, W., Li, J., Gagarinova, A. G., Pogoutse, O., Mori, H., Wanner, B. L., Lo, H., Wasniewski, J., Christopolous, C., Ali, M., Venn, P., Safavi-Naini, A., Sourour, N., Caron, S., Choi, J. Y., Laigle, L., Nazarians-Armavil, A., Deshpande, A., Joe, S., Datsenko, K. A., Yamamoto, N., Andrews, B. J., Boone, C., Ding, H., Sheikh, B., Moreno-Hagelseib, G., Greenblatt, J. F., and Emili, A. (2008). eSGA: E. coli synthetic genetic array analysis. Nat. Methods 5, 789-795.
-
(2008)
Nat. Methods
, vol.5
, pp. 789-795
-
-
Butland, G.1
Babu, M.2
Diaz-Mejia, J.J.3
Bohdana, F.4
Phanse, S.5
Gold, B.6
Yang, W.7
Li, J.8
Gagarinova, A.G.9
Pogoutse, O.10
Mori, H.11
Wanner, B.L.12
Lo, H.13
Wasniewski, J.14
Christopolous, C.15
Ali, M.16
Venn, P.17
Safavi-Naini, A.18
Sourour, N.19
Caron, S.20
Choi, J.Y.21
Laigle, L.22
Nazarians-Armavil, A.23
Deshpande, A.24
Joe, S.25
Datsenko, K.A.26
Yamamoto, N.27
Andrews, B.J.28
Boone, C.29
Ding, H.30
Sheikh, B.31
Moreno-Hagelseib, G.32
Greenblatt, J.F.33
Emili, A.34
more..
-
15
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
Butland, G., Peregrin-Alvarez, J. M., Li, J., Yang, W., Yang, X., Canadien, V., Starostine, A., Richards, D., Beattie, B., Krogan, N., Davey, M., Parkinson, J., Greenblatt, J., and Emili, A. (2005). Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433, 531-537.
-
(2005)
Nature
, vol.433
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
Canadien, V.6
Starostine, A.7
Richards, D.8
Beattie, B.9
Krogan, N.10
Davey, M.11
Parkinson, J.12
Greenblatt, J.13
Emili, A.14
-
16
-
-
35548995356
-
The RNA degradosome of Escherichia coli: An mRNAdegrading machine assembled on RNase e
-
Carpousis, A. J. (2007). The RNA degradosome of Escherichia coli: An mRNAdegrading machine assembled on RNase E. Ann. Rev. Microbiol. 61, 71-87.
-
(2007)
Ann. Rev. Microbiol
, vol.61
, pp. 71-87
-
-
Carpousis, A.J.1
-
17
-
-
0142184432
-
Studies of protein-ligand interactions by NMR
-
Clarkson, J., and Campbell, I. D. (2003). Studies of protein-ligand interactions by NMR. Biochem. Soc. Trans. 31, 1006-1009.
-
(2003)
Biochem. Soc. Trans
, vol.31
, pp. 1006-1009
-
-
Clarkson, J.1
Campbell, I.D.2
-
18
-
-
49549092476
-
Mapping multiprotein complexes by affinity purification and mass spectrometry
-
Collins, M. O., and Choudhary, J. S. (2008). Mapping multiprotein complexes by affinity purification and mass spectrometry. Curr. Opin. Biotechnol. 19, 324-330.
-
(2008)
Curr. Opin. Biotechnol
, vol.19
, pp. 324-330
-
-
Collins, M.O.1
Choudhary, J.S.2
-
19
-
-
33847779058
-
The 3D structure of a periplasmspanning platform required for assembly of group 1 capsular polysaccharides in Escherichia coli
-
Collins, R. F., Beis, K., Dong, C., Botting, C. H., McDonnell, C., Ford, R. C., Clarke, B. R., Whitfield, C., and Naismith, J. H. (2007). The 3D structure of a periplasmspanning platform required for assembly of group 1 capsular polysaccharides in Escherichia coli. Proc. Natl. Acad. Sci. USA 104, 2390-2395.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2390-2395
-
-
Collins, R.F.1
Beis, K.2
Dong, C.3
Botting, C.H.4
McDonnell, C.5
Ford, R.C.6
Clarke, B.R.7
Whitfield, C.8
Naismith, J.H.9
-
20
-
-
34247465669
-
Protein crystallization by surface entropy reduction: Optimization of the ser strategy
-
Cooper, D. R., Boczek, T., Grelewska, K., Pinkowska, M., Sikorska, M., Zawadzki, M., and Derewenda, Z. (2007). Protein crystallization by surface entropy reduction: Optimization of the SER strategy. Acta Crystallogr. D 63, 636-645.
-
(2007)
Acta Crystallogr
, vol.63
, pp. 636-645
-
-
Cooper, D.R.1
Boczek, T.2
Grelewska, K.3
Pinkowska, M.4
Sikorska, M.5
Zawadzki, M.6
Derewenda, Z.7
-
21
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A., and Wanner, B. L. (2000). One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97, 6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
22
-
-
0035108208
-
Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens
-
Ding, S. Y., Rincon, M. T., Lamed, R., Martin, J. C., McCrae, S. I., Aurilia, V., Shoham, Y., Bayer, E. A., and Flint, H. J. (2001). Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens. J. Bacteriol. 183, 1945-1953.
-
(2001)
J. Bacteriol
, vol.183
, pp. 1945-1953
-
-
Ding, S.Y.1
Rincon, M.T.2
Lamed, R.3
Martin, J.C.4
McCrae, S.I.5
Aurilia, V.6
Shoham, Y.7
Bayer, E.A.8
Flint, H.J.9
-
23
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez, C., Boelens, R., and Bonvin, A. M. (2003). HADDOCK: A protein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125, 1731-1737.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
24
-
-
0345647107
-
Interaction of the hydrogenase accessory protein HypC with HycE, the large subunit of Escherichia coli hydrogenase 3 during enzyme maturation
-
Drapal, N., and Bock, A. (1998). Interaction of the hydrogenase accessory protein HypC with HycE, the large subunit of Escherichia coli hydrogenase 3 during enzyme maturation. Biochemistry 37, 2941-2948.
-
(1998)
Biochemistry
, vol.37
, pp. 2941-2948
-
-
Drapal, N.1
Bock, A.2
-
25
-
-
50649104037
-
Protein translocation across the bacterial cytoplasmic membrane
-
Driessen, A. J.M., and Nouwen, N. (2008). Protein translocation across the bacterial cytoplasmic membrane. Ann. Rev. Biochem. 77, 643-667.
-
(2008)
Ann. Rev. Biochem
, vol.77
, pp. 643-667
-
-
Driessen, A.J.M.1
Nouwen, N.2
-
26
-
-
42049084182
-
Hydrogen- deuterium exchange strategy for delineation of contact sites in protein complexes
-
Dyson, H. J., Kostic, M., Liu, J., and Martinez-Yamout, M. A. (2008). Hydrogen- deuterium exchange strategy for delineation of contact sites in protein complexes. FEBS Lett. 582, 1495-1500.
-
(2008)
FEBS Lett
, vol.582
, pp. 1495-1500
-
-
Dyson, H.J.1
Kostic, M.2
Liu, J.3
Martinez-Yamout, M.A.4
-
27
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright, A. J., Iliopoulos, I., Kyrpides, N. C., and Ouzounis, C. A. (1999). Protein interaction maps for complete genomes based on gene fusion events. Nature 402, 86-90.
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
28
-
-
34250886905
-
The CO and CN(-) ligands to the active site Fe in [NiFe] -hydrogenase of Escherichia coli have different metabolic origins
-
Forzi, L., Hellwig, P., Thauer, R. K., and Sawers, R. G. (2007). The CO and CN(-) ligands to the active site Fe in [NiFe]-hydrogenase of Escherichia coli have different metabolic origins. FEBS Lett. 581, 3317-3321.
-
(2007)
FEBS Lett
, vol.581
, pp. 3317-3321
-
-
Forzi, L.1
Hellwig, P.2
Thauer, R.K.3
Sawers, R.G.4
-
29
-
-
0027270199
-
Structural thermodynamics: Prediction of protein stability and protein binding affinities
-
Freire, E. (1993). Structural thermodynamics: Prediction of protein stability and protein binding affinities. Arch. Biochem. Biophys. 303, 181-184.\
-
(1993)
Arch. Biochem. Biophys
, vol.303
, pp. 181-184
-
-
Freire, E.1
-
30
-
-
0027502582
-
Organization of a Clostridium thermocellum gene cluster encoding the cellulosomal scaffolding protein CipA and a protein possibly involved in attachment of the cellulosome to the cell surface
-
Fujino, T., Beguin, P., and Aubert, J. P. (1993). Organization of a Clostridium thermocellum gene cluster encoding the cellulosomal scaffolding protein CipA and a protein possibly involved in attachment of the cellulosome to the cell surface. J. Bacteriol. 175, 1891-1899.
-
(1993)
J. Bacteriol
, vol.175
, pp. 1891-1899
-
-
Fujino, T.1
Beguin, P.2
Aubert, J.P.3
-
31
-
-
38549140094
-
RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
-
Gama-Castro, S., Jimenez-Jacinto, V., Peralta-Gil, M., Santos-Zavaleta, A., Penaloza- Spinola, M. I., Contreras-Moreira, B., Segura-Salazar, J., Muniz-Rascado, L., Martinez-Flores, I., Salgado, H., Bonavides-Martinez, C., Abreu-Goodger, C., Rodriguez-Penagos, C., Miranda-Rios, J., Morett, E., Merino, E., Huerta, A. M., Trevino-Quintanilla, L., and Collado-Vides, J. (2008). RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Res. 36, D120-D124.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Gama-Castro, S.1
Jimenez-Jacinto, V.2
Peralta-Gil, M.3
Santos-Zavaleta, A.4
Penaloza- Spinola, M.I.5
Contreras-Moreira, B.6
Segura-Salazar, J.7
Muniz-Rascado, L.8
Martinez-Flores, I.9
Salgado, H.10
Bonavides-Martinez, C.11
Abreu-Goodger, C.12
Rodriguez-Penagos, C.13
Miranda-Rios, J.14
Morett, E.15
Merino, E.16
Huerta, A.M.17
Trevino-Quintanilla, L.18
Collado-Vides, J.19
-
32
-
-
67649399074
-
Two-step assembly dynamics of the Bacillus subtilis divisome
-
Gamba, P., Veening, J. W., Saunders, N. J., Hamoen, L. W., and Daniel, R. A. (2009). Two-step assembly dynamics of the Bacillus subtilis divisome. J. Bacteriol. 191, 4186-4194.
-
(2009)
J. Bacteriol
, vol.191
, pp. 4186-4194
-
-
Gamba, P.1
Veening, J.W.2
Saunders, N.J.3
Hamoen, L.W.4
Daniel, R.A.5
-
33
-
-
0027250342
-
A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho
-
Geiselmann, J., Wang, Y., Seifried, S. E., and von Hippel, P. H. (1993). A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho. Proc. Natl. Acad. Sci. USA 90, 7754-7758.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 7754-7758
-
-
Geiselmann, J.1
Wang, Y.2
Seifried, S.E.3
Von Hippel, P.H.4
-
35
-
-
48249112175
-
MPIDB: The microbial protein interaction database
-
Goll, J., Rajagopala, S. V., Shiau, S. C., Wu, H., Lamb, B. T., and Uetz, P. (2008).MPIDB: The microbial protein interaction database. Bioinformatics 24, 1743-1744.
-
(2008)
Bioinformatics
, vol.24
, pp. 1743-1744
-
-
Goll, J.1
Rajagopala, S.V.2
Shiau, S.C.3
Wu, H.4
Lamb, B.T.5
Uetz, P.6
-
37
-
-
34548179003
-
Solution structure of YaeO, a Rho-specific inhibitor of transcription termination
-
Gutierrez, P., Kozlov, G., Gabrielli, L., Elias, D., Osborne, M. J., Gallouzi, I. E., and Gehring, K. (2007). Solution structure of YaeO, a Rho-specific inhibitor of transcription termination. J. Biol. Chem. 282, 23348-23353.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 23348-23353
-
-
Gutierrez, P.1
Kozlov, G.2
Gabrielli, L.3
Elias, D.4
Osborne, M.J.5
Gallouzi, I.E.6
Gehring, K.7
-
38
-
-
38149063767
-
Structural disorder promotes assembly of protein complexes
-
Hegyi, H., Schad, E., and Tompa, P. (2007). Structural disorder promotes assembly of protein complexes. BMC Struct. Biol. 7, 65.
-
(2007)
BMC Struct. Biol
, vol.7
, pp. 65
-
-
Hegyi, H.1
Schad, E.2
Tompa, P.3
-
39
-
-
0036242430
-
Mapping the core of the beta(2)-microglobulin amyloid fibril by H/D exchange
-
Hoshino, M., Katou, H., Hagihara, Y., Hasegawa, K., Naiki, H., and Goto, Y. (2002). Mapping the core of the beta(2)-microglobulin amyloid fibril by H/D exchange. Nat. Struct. Biol. 9, 332-336.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 332-336
-
-
Hoshino, M.1
Katou, H.2
Hagihara, Y.3
Hasegawa, K.4
Naiki, H.5
Goto, Y.6
-
40
-
-
0026446645
-
The hyp operon gene products are required for the maturation of catalytically active hydrogenase isoenzymes in Escherichia coli
-
Jacobi, A., Rossmann, R., and Bock, A. (1992). The hyp operon gene products are required for the maturation of catalytically active hydrogenase isoenzymes in Escherichia coli. Arch. Microbiol. 158, 444-451.
-
(1992)
Arch. Microbiol
, vol.158
, pp. 444-451
-
-
Jacobi, A.1
Rossmann, R.2
Bock, A.3
-
41
-
-
6344231261
-
Rapid analysis of large protein-protein complexes using NMR-derived orientational constraints: The 95kDa complex of LpxA with acyl carrier protein
-
Jain, N. U., Wyckoff, T. J., Raetz, C. R., and Prestegard, J. H. (2004). Rapid analysis of large protein-protein complexes using NMR-derived orientational constraints: The 95kDa complex of LpxA with acyl carrier protein. J. Mol. Biol. 343, 1379-1389.
-
(2004)
J. Mol. Biol
, vol.343
, pp. 1379-1389
-
-
Jain, N.U.1
Wyckoff, T.J.2
Raetz, C.R.3
Prestegard, J.H.4
-
42
-
-
16644371341
-
Optimum solubility (OS) screening: An efficient method to optimize buffer conditions for homogeneity and crystallization of proteins
-
Jancarik, J., Pufan, R., Hong, C., Kim, S. H., and Kim, R. (2004). Optimum solubility (OS) screening: An efficient method to optimize buffer conditions for homogeneity and crystallization of proteins. Acta Crystallogr. D 60, 1670-1673.
-
(2004)
Acta Crystallogr
, vol.60
, pp. 1670-1673
-
-
Jancarik, J.1
Pufan, R.2
Hong, C.3
Kim, S.H.4
Kim, R.5
-
43
-
-
58549100261
-
Transcript stability in the protein interaction network of Escherichia coli
-
Janga, S. C., and Babu, M. M. (2009). Transcript stability in the protein interaction network of Escherichia coli. Mol. Biosyst. 5, 154-162.
-
(2009)
Mol. Biosyst
, vol.5
, pp. 154-162
-
-
Janga, S.C.1
Babu, M.M.2
-
44
-
-
0038359614
-
CAPRI: A critical assessment of predicted interactions
-
Janin, J., Henrick, K., Moult, J., Eyck, L. T., Sternberg, M. J., Vajda, S., Vakser, I., and Wodak, S. J. (2003). CAPRI: A critical assessment of predicted interactions. Proteins 52, 2-9.
-
(2003)
Proteins
, vol.52
, pp. 2-9
-
-
Janin, J.1
Henrick, K.2
Moult, J.3
Eyck, L.T.4
Sternberg, M.J.5
Vajda, S.6
Vakser, I.7
Wodak, S.J.8
-
45
-
-
33846052595
-
SNAPPI-DB: A database and API of structures, interfaces and alignments for protein-proteininteractions
-
Jefferson, E. R., Walsh, T. P., Roberts, T. J., and Barton, G. J. (2007). SNAPPI-DB: A database and API of structures, interfaces and alignments for protein-proteininteractions. Nucleic Acids Res. 35, D580-D589.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Jefferson, E.R.1
Walsh, T.P.2
Roberts, T.J.3
Barton, G.J.4
-
46
-
-
20744446399
-
Structure, function, and formation of biological iron-sulfur clusters
-
Johnson, D. C., Dean, D. R., Smith, A. D., and Johnson, M. K. (2005). Structure, function, and formation of biological iron-sulfur clusters. Annu. Rev. Biochem. 74, 247-281.
-
(2005)
Annu. Rev. Biochem
, vol.74
, pp. 247-281
-
-
Johnson, D.C.1
Dean, D.R.2
Smith, A.D.3
Johnson, M.K.4
-
47
-
-
0024449503
-
Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: Application to staphylococcal nuclease
-
Kay, L. E., Torchia, D. A., and Bax, A. (1989). Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: Application to staphylococcal nuclease. Biochemistry 28, 8972-8979.
-
(1989)
Biochemistry
, vol.28
, pp. 8972-8979
-
-
Kay, L.E.1
Torchia, D.A.2
Bax, A.3
-
48
-
-
58149179979
-
EcoCyc: A comprehensive view of Escherichia coli biology
-
Keseler, I. M., Bonavides-Martinez, C., Collado-Vides, J., Gama-Castro, S., Gunsalus, R. P., Johnson, D. A., Krummenacker, M., Nolan, L. M., Paley, S., Paulsen, I. T., Peralta-Gil, M., Santos-Zavaleta, A., Shearer, A. G., and Karp, P. D. (2009). EcoCyc: A comprehensive view of Escherichia coli biology. Nucleic Acids Res. 37, D464-D470.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keseler, I.M.1
Bonavides-Martinez, C.2
Collado-Vides, J.3
Gama-Castro, S.4
Gunsalus, R.P.5
Johnson, D.A.6
Krummenacker, M.7
Nolan, L.M.8
Paley, S.9
Paulsen, I.T.10
Peralta-Gil, M.11
Santos-Zavaleta, A.12
Shearer, A.G.13
Karp, P.D.14
-
49
-
-
36849023918
-
Anaerobic growth of Escherichia coli on Dtartrate depends on the fumarate carrier DcuB and fumarase, rather than the Ltartrate carrier TtdT and L-tartrate dehydratase
-
Kim, O. B., Lux, S., and Unden, G. (2007a). Anaerobic growth of Escherichia coli on Dtartrate depends on the fumarate carrier DcuB and fumarase, rather than the Ltartrate carrier TtdT and L-tartrate dehydratase. Arch. Microbiol. 188, 583-589.
-
(2007)
Arch. Microbiol
, vol.188
, pp. 583-589
-
-
Kim, O.B.1
Lux, S.2
Unden, G.3
-
50
-
-
34548455922
-
Functional linkages can reveal protein complexes for structure determination
-
September 11, Ref Type: Abstract
-
Kim, S. M., Bowers, P. M., Pal, D., Strong, M., Terwilliger, T. C., Kaufmann, M., and Eisenberg, D. (2007b). Functional linkages can reveal protein complexes for structure determination. Structure 15(9), 1079-1089. September 11, Ref Type: Abstract.
-
(2007)
Structure
, vol.15
, Issue.9
, pp. 1079-1089
-
-
Kim, S.M.1
Bowers, P.M.2
Pal, D.3
Strong, M.4
Terwilliger, T.C.5
Kaufmann, M.6
Eisenberg, D.7
-
51
-
-
33750799403
-
The architecture of the multisubunit TRAPP i complex suggests a model for vesicle tethering
-
Kim, Y. G., Raunser, S., Munger, C., Wagner, J., Song, Y. L., Cygler, M., Walz, T., Oh, B. H., and Sacher, M. (2006). The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering. Cell 127, 817-830.
-
(2006)
Cell
, vol.127
, pp. 817-830
-
-
Kim, Y.G.1
Raunser, S.2
Munger, C.3
Wagner, J.4
Song, Y.L.5
Cygler, M.6
Walz, T.7
Oh, B.H.8
Sacher, M.9
-
52
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research
-
Kitagawa, M., Ara, T., Arifuzzaman, M., Ioka-Nakamichi, T., Inamoto, E., Toyonaga, H., and Mori, H. (2005). Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research. DNA Res. 12, 291-299.
-
(2005)
DNA Res
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
-
53
-
-
0027254139
-
Imidazole glycerol phosphate synthase: The glutamine amidotransferase in histidine biosynthesis
-
Klem, T. J., and Davisson, V. J. (1993). Imidazole glycerol phosphate synthase: The glutamine amidotransferase in histidine biosynthesis. Biochemistry 32, 5177-5186.
-
(1993)
Biochemistry
, vol.32
, pp. 5177-5186
-
-
Klem, T.J.1
Davisson, V.J.2
-
54
-
-
59149098137
-
Crystallography and protein-protein interactions: Biological interfaces and crystal contacts
-
Kobe, B., Guncar, G., Buchholz, R., Huber, T., Maco, B., Cowieson, N., Martin, J. L., Marfori, M., and Forwood, J. K. (2008). Crystallography and protein-protein interactions: Biological interfaces and crystal contacts. Biochem. Soc. Trans. 36, 1438-1441.
-
(2008)
Biochem. Soc. Trans
, vol.36
, pp. 1438-1441
-
-
Kobe, B.1
Guncar, G.2
Buchholz, R.3
Huber, T.4
MacO, B.5
Cowieson, N.6
Martin, J.L.7
Marfori, M.8
Forwood, J.K.9
-
55
-
-
0345169163
-
Small-angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution
-
Koch, M. H., Vachette, P., and Svergun, D. I. (2003). Small-angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution. Q. Rev. Biophys. 36, 147-227.
-
(2003)
Q. Rev. Biophys
, vol.36
, pp. 147-227
-
-
Koch, M.H.1
Vachette, P.2
Svergun, D.I.3
-
56
-
-
33846077881
-
PROTCOM: Searchable database of protein complexes enhanced with domain-domain structures
-
Kundrotas, P. J., and Alexov, E. (2007). PROTCOM: Searchable database of protein complexes enhanced with domain-domain structures. Nucleic Acids Res. 35, D575-D579.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kundrotas, P.J.1
Alexov, E.2
-
57
-
-
1842861593
-
High-sensitivity mass spectrometry for imaging subunit interactions: Hydrogen/deuterium exchange
-
Lanman, J., and Prevelige, P. E. (2004). High-sensitivity mass spectrometry for imaging subunit interactions: Hydrogen/deuterium exchange. Curr. Opin. Struct. Biol. 14, 181-188.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 181-188
-
-
Lanman, J.1
Prevelige, P.E.2
-
58
-
-
33748346853
-
A complexomic study of Escherichia coli using two-dimensional blue native/ SDS polyacrylamide gel electrophoresis
-
Lasserre, J. P., Beyne, E., Pyndiah, S., Lapaillerie, D., Claverol, S., and Bonneu, M. (2006). A complexomic study of Escherichia coli using two-dimensional blue native/ SDS polyacrylamide gel electrophoresis. Electrophoresis 27, 3306-3321.
-
(2006)
Electrophoresis
, vol.27
, pp. 3306-3321
-
-
Lasserre, J.P.1
Beyne, E.2
Pyndiah, S.3
Lapaillerie, D.4
Claverol, S.5
Bonneu, M.6
-
59
-
-
0035442411
-
Direct measurement of protein binding energetics by isothermal titration calorimetry
-
Leavitt, S., and Freire, E. (2001). Direct measurement of protein binding energetics by isothermal titration calorimetry. Curr. Opin. Struct. Biol. 11, 560-566.
-
(2001)
Curr. Opin. Struct. Biol
, vol.11
, pp. 560-566
-
-
Leavitt, S.1
Freire, E.2
-
60
-
-
33751415854
-
3D complex: A structural classification of protein complexes
-
Levy, E. D., Pereira-Leal, J. B., Chothia, C., and Teichmann, S. A. (2006). 3D complex: A structural classification of protein complexes. PLoS. Comput. Biol. 2, e155.
-
(2006)
PLoS. Comput. Biol
, vol.2
-
-
Levy, E.D.1
Pereira-Leal, J.B.2
Chothia, C.3
Teichmann, S.A.4
-
61
-
-
65249094269
-
Essential core of protein-protein interaction network in Escherichia coli
-
Lin, C. C., Juan, H. F., Hsiang, J. T., Hwang, Y. C., Mori, H., and Huang, H. C. (2009). Essential core of protein-protein interaction network in Escherichia coli. J. Proteome Res. 8, 1925-1931.
-
(2009)
J. Proteome Res
, vol.8
, pp. 1925-1931
-
-
Lin, C.C.1
Juan, H.F.2
Hsiang, J.T.3
Hwang, Y.C.4
Mori, H.5
Huang, H.C.6
-
62
-
-
0042622240
-
GlobPlot: Exploring protein sequences for globularity and disorder
-
Linding, R., Russell, R. B., Neduva, V., and Gibson, T. J. (2003). GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Res. 31, 3701-3708.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3701-3708
-
-
Linding, R.1
Russell, R.B.2
Neduva, V.3
Gibson, T.J.4
-
63
-
-
67650742114
-
Assessing and predicting protein interactions using both local and global network topological metrics
-
Liu, G., Li, J., and Wong, L. (2008). Assessing and predicting protein interactions using both local and global network topological metrics. Genome Inform. 21, 138-149.
-
(2008)
Genome Inform
, vol.21
, pp. 138-149
-
-
Liu, G.1
Li, J.2
Wong, L.3
-
64
-
-
48849104183
-
Application of amide proton exchange mass spectrometry for the study of proteinprotein interactions
-
Chapter 20:Unit20.9
-
Mandell, J. G., Baerga-Ortiz, A., Croy, C. H., Falick, A. M., and Komives, E. A. (2005). Application of amide proton exchange mass spectrometry for the study of proteinprotein interactions. Curr. Protoc. Protein Sci. Chapter 20:Unit20.9.
-
(2005)
Curr. Protoc. Protein Sci
-
-
Mandell, J.G.1
Baerga-Ortiz, A.2
Croy, C.H.3
Falick, A.M.4
Komives, E.A.5
-
65
-
-
0032428378
-
Identification of proteinprotein interfaces by decreased amide proton solvent accessibility
-
Mandell, J. G., Falick, A. M., and Komives, E. A. (1998). Identification of proteinprotein interfaces by decreased amide proton solvent accessibility. Proc. Natl. Acad. Sci. USA 95, 14705-14710.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14705-14710
-
-
Mandell, J.G.1
Falick, A.M.2
Komives, E.A.3
-
66
-
-
0033644009
-
Determination of affinity and kinetic rate constants using surface plasmon resonance
-
Masson, L., Mazza, A., and De, C. G. (2000). Determination of affinity and kinetic rate constants using surface plasmon resonance. Methods Mol. Biol. 145, 189-201.
-
(2000)
Methods Mol. Biol
, vol.145
, pp. 189-201
-
-
Masson, L.1
Mazza, A.2
De C, G.3
-
67
-
-
0035478125
-
Surface plasmon resonance: Towards an understanding of the mechanisms of biological molecular recognition
-
McDonnell, J. M. (2001). Surface plasmon resonance: Towards an understanding of the mechanisms of biological molecular recognition. Curr. Opin. Chem. Biol. 5, 572-577.
-
(2001)
Curr. Opin. Chem. Biol
, vol.5
, pp. 572-577
-
-
McDonnell . J, M.1
-
68
-
-
44949138270
-
Crystal structures of the conserved tRNA-modifying enzyme GidA: Implications for its interaction with MnmE and substrate
-
Meyer, S., Scrima, A., Versees, W., and Wittinghofer, A. (2008). Crystal structures of the conserved tRNA-modifying enzyme GidA: Implications for its interaction with MnmE and substrate. J. Mol. Biol. 380, 532-547.
-
(2008)
J. Mol. Biol
, vol.380
, pp. 532-547
-
-
Meyer, S.1
Scrima, A.2
Versees, W.3
Wittinghofer, A.4
-
69
-
-
0001689741
-
Gradient-enhanced triple-resonance threedimensional NMR experiments with improved sensitivity
-
Muhandiram, D. R., and Kay, L. E. (1994). Gradient-enhanced triple-resonance threedimensional NMR experiments with improved sensitivity. J. Magn. Reson. B 103, 203-216.
-
(1994)
J. Magn. Reson B
, vol.103
, pp. 203-216
-
-
Muhandiram, D.R.1
Kay, L.E.2
-
70
-
-
0035116079
-
SoxR-dependent response to oxidative stress and virulence of Erwinia chrysanthemi: The key role of SufC, an orphan ABC ATPase
-
Nachin, L., El, H. M., Loiseau, L., Expert, D., and Barras, F. (2001). SoxR-dependent response to oxidative stress and virulence of Erwinia chrysanthemi: The key role of SufC, an orphan ABC ATPase. Mol. Microbiol. 39, 960-972.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 960-972
-
-
Nachin, L.1
El, H.M.2
Loiseau, L.3
Expert, D.4
Barras, F.5
-
71
-
-
0036302354
-
-
Nakanishi, T., Miyazawa, M., Sakakura, M., Terasawa, H., Takahashi, H., and Shimada, I. (2002). Determination of the interface of a large protein complex by transferred cross-saturation measurements. J. Mol. Biol. 318, 245-249.
-
(2002)
Determination of the Interface of A Large Protein Complex by Transferred Cross-saturation Measurements. J. Mol. Biol
, vol.318
, pp. 245-249
-
-
Nakanishi, T.1
Miyazawa, M.2
Sakakura, M.3
Terasawa, H.4
Takahashi, H.5
Shimada, I.6
-
72
-
-
33845977706
-
Escherichia coli proteome chips for detecting protein-protein interactions
-
Oishi, Y., Yunomura, S., Kawahashi, Y., Doi, N., Takashima, H., Baba, T., Mori, H., and Yanagawa, H. (2006). Escherichia coli proteome chips for detecting protein-protein interactions. Proteomics 6, 6433-6436.
-
(2006)
Proteomics
, vol.6
, pp. 6433-6436
-
-
Oishi, Y.1
Yunomura, S.2
Kawahashi, Y.3
Doi, N.4
Takashima, H.5
Baba, T.6
Mori, H.7
Yanagawa, H.8
-
73
-
-
0242664733
-
The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in Escherichia coli
-
Outten, F. W., Wood, M. J., Munoz, F. M., and Storz, G. (2003). The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in Escherichia coli. J. Biol. Chem. 278, 45713-45719.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 45713-45719
-
-
Outten, F.W.1
Wood, M.J.2
Munoz, F.M.3
Storz, G.4
-
74
-
-
49649088032
-
Strategies for improving crystallization success rates
-
Page, R. (2008). Strategies for improving crystallization success rates. Methods Mol. Biol. 426, 345-362.
-
(2008)
Methods Mol. Biol
, vol.426
, pp. 345-362
-
-
Page, R.1
-
75
-
-
38549161592
-
A proteome-wide protein interaction map for Campylobacter jejuni
-
Parrish, J. R., Yu, J., Liu, G., Hines, J. A., Chan, J. E., Mangiola, B. A., Zhang, H., Pacifico, S., Fotouhi, F., DiRita, V. J., Ideker, T., Andrews, P., and Finley, R. L., Jr. (2007). A proteome-wide protein interaction map for Campylobacter jejuni. Genome Biol. 8, R130.
-
(2007)
Genome Biol
, vol.8
-
-
Parrish, J.R.1
Yu, J.2
Liu, G.3
Hines, J.A.4
Chan, J.E.5
Mangiola, B.A.6
Zhang, H.7
Pacifico, S.8
Fotouhi, F.9
Dirita, V.J.10
Ideker, T.11
Andrews, P.12
Finley, R.13
-
76
-
-
24044434446
-
Filtering high-throughput protein-protein interaction data using a combination of genomic features
-
Patil, A., and Nakamura, H. (2005). Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinformatics 6, 100.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 100
-
-
Patil, A.1
Nakamura, H.2
-
77
-
-
0031903961
-
An Escherichia coli gene (yaeO) suppresses temperature-sensitive mutations in essential genes by modulating Rho-dependent transcription termination
-
Pichoff, S., Alibaud, L., Guedant, A., Castanie, M. P., and Bouche, J. P. (1998). An Escherichia coli gene (yaeO) suppresses temperature-sensitive mutations in essential genes by modulating Rho-dependent transcription termination. Mol. Microbiol. 29, 859-869.
-
(1998)
Mol. Microbiol
, vol.29
, pp. 859-869
-
-
Pichoff, S.1
Alibaud, L.2
Guedant, A.3
Castanie, M.P.4
Bouche, J.P.5
-
78
-
-
62449195537
-
Surface plasmon resonance biosensing
-
Piliarik, M., Vaisocherova, H., and Homola, J. (2009). Surface plasmon resonance biosensing. Methods Mol. Biol. 503, 65-88.
-
(2009)
Methods Mol. Biol
, vol.503
, pp. 65-88
-
-
Piliarik, M.1
Vaisocherova, H.2
Homola, J.3
-
79
-
-
0028223611
-
Rho and RNA: Models for recognition and response
-
Platt, T. (1994). Rho and RNA: Models for recognition and response. Mol. Microbiol. 11, 983-990.
-
(1994)
Mol. Microbiol
, vol.11
, pp. 983-990
-
-
Platt, T.1
-
80
-
-
24044515001
-
FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded
-
Prilusky, J., Felder, C. E., Zeev-Ben-Mordehai, T., Rydberg, E. H., Man, O., Beckmann, J. S., Silman, I., and Sussman, J. L. (2005). FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics 21, 3435-3438.
-
(2005)
Bioinformatics
, vol.21
, pp. 3435-3438
-
-
Prilusky, J.1
Felder, C.E.2
Zeev-Ben-Mordehai, T.3
Rydberg, E.H.4
Man, O.5
Beckmann, J.S.6
Silman, I.7
Sussman, J.L.8
-
81
-
-
8444232122
-
Transient complexes of redox proteins: Structural and dynamic details from NMR studies
-
Prudencio, M., and Ubbink, M. (2004). Transient complexes of redox proteins: Structural and dynamic details from NMR studies. J. Mol. Recognit. 17, 524-539.
-
(2004)
J. Mol. Recognit
, vol.17
, pp. 524-539
-
-
Prudencio, M.1
Ubbink, M.2
-
82
-
-
37149049312
-
X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution
-
Putnam, C. D., Hammel, M., Hura, G. L., and Tainer, J. A. (2007). X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution. Q. Rev. Biophys. 40, 191-285.
-
(2007)
Q. Rev. Biophys
, vol.40
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
83
-
-
33744469827
-
A survey of protein-protein complex crystallizations
-
Radaev, S., Li, S., and Sun, P. D. (2006). A survey of protein-protein complex crystallizations. Acta Crystallogr. D 62, 605-612.
-
(2006)
Acta Crystallogr. D
, vol.62
, pp. 605-612
-
-
Radaev, S.1
Li, S.2
Sun, P.D.3
-
84
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
Rain, J. C., Selig, L., De, R. H., Battaglia, V., Reverdy, C., Simon, S., Lenzen, G., Petel, F., Wojcik, J., Schachter, V., Chemama, Y., Labigne, A., and Legrain, P. (2001). The protein-protein interaction map of Helicobacter pylori. Nature 409, 211-215.
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De, R.H.3
Battaglia, V.4
Reverdy, C.5
Simon, S.6
Lenzen, G.7
Petel, F.8
Wojcik, J.9
Schachter, V.10
Chemama, Y.11
Labigne, A.12
Legrain, P.13
-
85
-
-
38949209555
-
Structure of [NiFe] hydrogenase maturation protein HypE from Escherichia coli and its interaction with HypF
-
Rangarajan, E. S., Asinas, A., Proteau, A., Munger, C., Baardsnes, J., Iannuzzi, P., Matte, A., and Cygler, M. (2008). Structure of [NiFe] hydrogenase maturation protein HypE from Escherichia coli and its interaction with HypF. J. Bacteriol. 190, 1447-1458.
-
(2008)
J. Bacteriol
, vol.190
, pp. 1447-1458
-
-
Rangarajan, E.S.1
Asinas, A.2
Proteau, A.3
Munger, C.4
Baardsnes, J.5
Iannuzzi, P.6
Matte, A.7
Cygler, M.8
-
86
-
-
0027213864
-
Identification of the Ltartrate dehydratase genes (ttdA and ttdB) of Escherichia coli and evolutionary relationship with the class i fumarase genes
-
Reaney, S. K., Begg, C., Bungard, S. J., and Guest, J. R. (1993). Identification of the Ltartrate dehydratase genes (ttdA and ttdB) of Escherichia coli and evolutionary relationship with the class I fumarase genes. J. Gen. Microbiol. 139, 1523-1530.
-
(1993)
J. Gen. Microbiol
, vol.139
, pp. 1523-1530
-
-
Reaney, S.K.1
Begg, C.2
Bungard, S.J.3
Guest, J.R.4
-
87
-
-
0346890205
-
Taming of a poison: Biosynthesis of the NiFe-hydrogenase cyanide ligands
-
Reissmann, S., Hochleitner, E., Wang, H., Paschos, A., Lottspeich, F., Glass, R. S., and Bock, A. (2003). Taming of a poison: Biosynthesis of the NiFe-hydrogenase cyanide ligands. Science 299, 1067-1070.
-
(2003)
Science
, vol.299
, pp. 1067-1070
-
-
Reissmann, S.1
Hochleitner, E.2
Wang, H.3
Paschos, A.4
Lottspeich, F.5
Glass, R.S.6
Bock, A.7
-
88
-
-
38449091672
-
Detection of protein-protein interactions using a simple survival protein-fragment complementation assay based on the enzyme dihydrofolate reductase
-
Remy, I., Campbell-Valois, F. X., and Michnick, S. W. (2007). Detection of protein-protein interactions using a simple survival protein-fragment complementation assay based on the enzyme dihydrofolate reductase. Nat. Protoc. 2, 2120-2125.
-
(2007)
Nat. Protoc
, vol.2
, pp. 2120-2125
-
-
Remy, I.1
Campbell-Valois, F.X.2
Michnick, S.W.3
-
89
-
-
0030053611
-
Structural organization of transcription termination factor Rho
-
Richardson, J. P. (1996). Structural organization of transcription termination factor Rho. J. Biol. Chem. 271, 1251-1254.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 1251-1254
-
-
Richardson, J.P.1
-
91
-
-
58849139777
-
Allosteric control of Escherichia coli rRNA promoter complexes by DksA
-
Rutherford, S. T., Villers, C. L., Lee, J. H., Ross, W., and Gourse, R. L. (2009). Allosteric control of Escherichia coli rRNA promoter complexes by DksA. Genes Dev. 23, 236-248.
-
(2009)
Genes Dev
, vol.23
, pp. 236-248
-
-
Rutherford, S.T.1
Villers, C.L.2
Lee, J.H.3
Ross, W.4
Gourse, R.L.5
-
92
-
-
39749105401
-
A large-scale protein-protein interaction analysis in Synechocystis sp. PCC6803
-
Sato, S., Shimoda, Y., Muraki, A., Kohara, M., Nakamura, Y., and Tabata, S. (2007). A large-scale protein-protein interaction analysis in Synechocystis sp. PCC6803. DNA Res. 14, 207-216.
-
(2007)
DNA Res
, vol.14
, pp. 207-216
-
-
Sato, S.1
Shimoda, Y.2
Muraki, A.3
Kohara, M.4
Nakamura, Y.5
Tabata, S.6
-
93
-
-
34247894069
-
Vectors for co-expression of an unrestricted number of proteins
-
Scheich, C., Kummel, D., Soumailakakis, D., Heinemann, U., and Bussow, K. (2007). Vectors for co-expression of an unrestricted number of proteins. Nucleic Acids Res. 35, e43.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Scheich, C.1
Kummel, D.2
Soumailakakis, D.3
Heinemann, U.4
Bussow, K.5
-
95
-
-
33846099868
-
DisProt: The database of disordered proteins
-
Sickmeier,M., Hamilton, J. A., LeGall,T., Vacic, V.,Cortese,M. S., Tantos, A., Szabo, B., Tompa, P., Chen, J., Uversky, V. N., Obradovic, Z., and Dunker, A. K. (2007). DisProt: The database of disordered proteins. Nucleic Acids Res. 35, D786-D793.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Sickmeier, M.1
Hamilton, J.A.2
Legall, T.3
Vacic, V.4
Cortesem, M.S.5
Tantos, A.6
Szabo, B.7
Tompa, P.8
Chen, J.9
Uversky, V.N.10
Obradovic, Z.11
Dunker, A.K.12
-
96
-
-
39749138785
-
A structural understanding of the dynamic ribosome machine
-
Steitz, T. A. (2008). A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell. Biol. 9, 242-253.
-
(2008)
Nat. Rev. Mol. Cell. Biol
, vol.9
, pp. 242-253
-
-
Steitz, T.A.1
-
97
-
-
27144431766
-
Protein complexes of the Escherichia coli cell envelope
-
Stenberg, F., Chovanec, P., Maslen, S. L., Robinson, C. V., Ilag, L. L., von, H. G., and Daley, D. O. (2005). Protein complexes of the Escherichia coli cell envelope. J. Biol. Chem. 280, 34409-34419.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 34409-34419
-
-
Stenberg, F.1
Chovanec, P.2
Maslen, S.L.3
Robinson, C.V.4
Ilag, L.L.5
Von, H.G.6
Daley Di, O.7
-
98
-
-
38549151156
-
Bacteriome.org an integrated protein interaction database for E. coli
-
Su, C., Peregrin-Alvarez, J. M., Butland, G., Phanse, S., Fong, V., Emili, A., and Parkinson, J. (2008). Bacteriome.org an integrated protein interaction database for E. coli. Nucleic Acids Res. 36, D632-D636.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Su, C.1
Peregrin-Alvarez, J.M.2
Butland, G.3
Phanse, S.4
Fong, V.5
Emili, A.6
Parkinson, J.7
-
99
-
-
0029185933
-
CRYSOL - A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun, D., Barberato, C., and Koch, M. H.J. (1995). CRYSOL - A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Crystal. 28, 768-773.
-
(1995)
J. Appl. Crystal
, vol.28
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.J.3
-
100
-
-
0035010533
-
Determination of domain structure of proteins from x-ray solution scattering
-
June 1, Ref Type: Abstract
-
Svergun, D. I., Petoukhov, M. V., and Koch, M. H.J. (2001). Determination of domain structure of proteins from x-ray solution scattering. Biophys. J. 80(6), 2946-2953. June 1, Ref Type: Abstract
-
(2001)
Biophys. J
, vol.80
, Issue.6
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.J.3
-
101
-
-
0034051065
-
A novel NMR method for determining the interfaces of large protein-protein complexes
-
Takahashi, H., Nakanishi, T., Kami, K., Arata, Y., and Shimada, I. (2000). A novel NMR method for determining the interfaces of large protein-protein complexes. Nat. Struct. Biol. 7, 220-223.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 220-223
-
-
Takahashi, H.1
Nakanishi, T.2
Kami, K.3
Arata, Y.4
Shimada, I.5
-
102
-
-
32344445231
-
NMR studies of protein interactions
-
Takeuchi, K., and Wagner, G. (2006). NMR studies of protein interactions. Curr. Opin. Struct. Biol. 16, 109-117.
-
(2006)
Curr. Opin. Struct. Biol
, vol.16
, pp. 109-117
-
-
Takeuchi, K.1
Wagner, G.2
-
103
-
-
4444378917
-
Biochemical characterization of protein complexes from the Helicobacter pylori protein interaction map: Strategies for complex formation and evidence for novel interactions within type IV secretion systems
-
Terradot, L., Durnell, N., Li, M., Li, M., Ory, J., Labigne, A., Legrain, P., Colland, F., and Waksman, G. (2004). Biochemical characterization of protein complexes from the Helicobacter pylori protein interaction map: Strategies for complex formation and evidence for novel interactions within type IV secretion systems. Mol. Cell Proteomics 3, 809-819.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 809-819
-
-
Terradot, L.1
Durnell, N.2
Li, M.3
Li, M.4
Ory, J.5
Labigne, A.6
Legrain, P.7
Colland, F.8
Waksman, G.9
-
104
-
-
31344474305
-
Strategies for protein coexpression in Escherichia coli
-
Tolia, N. H., and Joshua-Tor, L. (2006). Strategies for protein coexpression in Escherichia coli. Nat. Methods 3, 55-64.
-
(2006)
Nat. Methods
, vol.3
, pp. 55-64
-
-
Tolia, N.H.1
Joshua- Tor, L.2
-
105
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
Tong, A. H., Lesage,G., Bader,G.D., Ding,H., Xu,H.,Xin, X., Young, J.,Berriz,G. F., Brost, R. L., Chang, M., Chen, Y., Cheng, X., et al., (2004). Global mapping of the yeast genetic interaction network. Science 303, 808-813.
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.1
Lesage, G.2
Bader, G.D.3
Ding, H.4
Xu, H.5
Xin, X.6
Young, J.7
Berrizg, F.8
Brost, R.L.9
Chang, M.10
Chen, Y.11
Cheng, X.12
-
106
-
-
64549106038
-
Convergence and combination of methods in protein-protein docking
-
Vajda, S., and Kozakov, D. (2009). Convergence and combination of methods in protein-protein docking. Curr. Opin. Struct. Biol. 19, 164-170.
-
(2009)
Curr. Opin. Struct. Biol
, vol.19
, pp. 164-170
-
-
Vajda, S.1
Kozakov, D.2
-
107
-
-
29544446689
-
Weak protein-protein interactions as probed by NMR spectroscopy
-
Vaynberg, J., and Qin, J. (2006). Weak protein-protein interactions as probed by NMR spectroscopy. Trends Biotechnol. 24, 22-27.
-
(2006)
Trends Biotechnol
, vol.24
, pp. 22-27
-
-
Vaynberg, J.1
Qin, J.2
-
108
-
-
34250874525
-
Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: Insights into cyanation reaction by thiol redox signaling
-
Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., and Miki, K. (2007). Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: Insights into cyanation reaction by thiol redox signaling. Mol. Cell 27, 29-40.
-
(2007)
Mol. Cell
, vol.27
, pp. 29-40
-
-
Watanabe, S.1
Matsumi, R.2
Arai, T.3
Atomi, H.4
Imanaka, T.5
Miki, K.6
-
109
-
-
55749085411
-
Features and applications of blue-native and clearnative electrophoresis
-
Wittig, I., and Schagger, H. (2008). Features and applications of blue-native and clearnative electrophoresis. Proteomics 8, 3974-3990.
-
(2008)
Proteomics
, vol.8
, pp. 3974-3990
-
-
Wittig, I.1
Schagger, H.2
-
110
-
-
0036974250
-
Prediction, assessment and validation of protein interaction maps in bacteria
-
Wojcik, J., Boneca, I. G., and Legrain, P. (2002). Prediction, assessment and validation of protein interaction maps in bacteria. J. Mol. Biol. 323, 763-770.
-
(2002)
J. Mol. Biol
, vol.323
, pp. 763-770
-
-
Wojcik, J.1
Boneca, I.G.2
Legrain, P.3
-
111
-
-
34147094355
-
Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: Comparison with high-throughput experimental data
-
Yellaboina, S., Goyal, K., and Mande, S. C. (2007). Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: Comparison with high-throughput experimental data. Genome Res. 17, 527-535.
-
(2007)
Genome Res
, vol.17
, pp. 527-535
-
-
Yellaboina, S.1
Goyal, K.2
Mande, S.C.3
-
112
-
-
33845398832
-
Evolution of enzymatic activities in the enolase superfamily: D-tartrate dehydratase from Bradyrhizobium japonicum
-
Yew, W. S., Fedorov, A. A., Fedorov, E. V., Wood, B. M., Almo, S. C., and Gerlt, J. A. (2006). Evolution of enzymatic activities in the enolase superfamily: D-tartrate dehydratase from Bradyrhizobium japonicum. Biochemistry 45, 14598-14608.
-
(2006)
Biochemistry
, vol.45
, pp. 14598-14608
-
-
Yew, W.S.1
Fedorov, A.A.2
Fedorov, E.V.3
Wood, B.M.4
Almo, S.C.5
Gerlt, J.A.6
-
113
-
-
33845672606
-
Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli
-
Yim, L., Moukadiri, I., Bjork, G. R., and Armengod, M. E. (2006). Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli. Nucleic Acids Res. 34, 5892-5905.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5892-5905
-
-
Yim, L.1
Moukadiri, I.2
Bjork, G.R.3
Armengod, M.E.4
-
114
-
-
59649126890
-
The identification of the determinants of the cyclic, sequential binding of elongation factors tu and g to the ribosome
-
Yu, H., Chan, Y. L., and Wool, I. G. (2009). The identification of the determinants of the cyclic, sequential binding of elongation factors tu and g to the ribosome. J. Mol. Biol. 386, 802-813.
-
(2009)
J. Mol. Biol
, vol.386
, pp. 802-813
-
-
Yu, H.1
Chan, Y.L.2
Wool, I.G.3
|