-
1
-
-
0034923923
-
Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies
-
Gerlt, J. A., and Babbitt, P. C. (2001) Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies, Annu. Rev. Biochem. 70, 209-246.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 209-246
-
-
Gerlt, J.A.1
Babbitt, P.C.2
-
2
-
-
0037396345
-
Evolution of function in (beta/alpha)(8)-barrel enzymes
-
Gerlt, J. A., and Raushel, F. M. (2003) Evolution of function in (beta/alpha)(8)-barrel enzymes, Curr. Opin. Chem. Biol. 7, 252-264.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 252-264
-
-
Gerlt, J.A.1
Raushel, F.M.2
-
3
-
-
9744279773
-
Divergent evolution in the enolase superfamily: The interplay of mechanism and specificity
-
Gerlt, J. A., Babbitt, P. C., and Rayment, I. (2005) Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity, Arch. Biochem. Biophys. 433, 59-70.
-
(2005)
Arch. Biochem. Biophys.
, vol.433
, pp. 59-70
-
-
Gerlt, J.A.1
Babbitt, P.C.2
Rayment, I.3
-
4
-
-
12644303230
-
The enolase superfamily: A general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids
-
Babbitt, P. C., Hasson, M. S., Wedekind, J. E., Palmer, D. R., Barrett, W. C., Reed, G. H., Rayment, I., Ringe, D., Kenyon, G. L., and Gerlt, J. A. (1996) The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids, Biochemistry 35, 16489-16501.
-
(1996)
Biochemistry
, vol.35
, pp. 16489-16501
-
-
Babbitt, P.C.1
Hasson, M.S.2
Wedekind, J.E.3
Palmer, D.R.4
Barrett, W.C.5
Reed, G.H.6
Rayment, I.7
Ringe, D.8
Kenyon, G.L.9
Gerlt, J.A.10
-
5
-
-
0035951059
-
Evolution of enzymatic activities in the enolase superfamily: Functional assignment of unknown proteins in Bacillus subtilis and Escherichia coli as L-Ala-D/L-Glu epimerases
-
Schmidt, D. M., Hubbard, B. K., and Gerlt, J. A. (2001) Evolution of enzymatic activities in the enolase superfamily: Functional assignment of unknown proteins in Bacillus subtilis and Escherichia coli as L-Ala-D/L-Glu epimerases, Biochemistry 40, 15707-15715.
-
(2001)
Biochemistry
, vol.40
, pp. 15707-15715
-
-
Schmidt, D.M.1
Hubbard, B.K.2
Gerlt, J.A.3
-
6
-
-
33645677238
-
Evolution of enzymatic activities in the enolase superfamily: N-succinylamino acid racemase and a new pathway for the irreversible conversion of D- to L-amino acids
-
Sakai, A., Xiang, D. F., Xu, C., Song, L., Yew, W. S., Raushel, F. M., and Gerlt, J. A. (2006) Evolution of enzymatic activities in the enolase superfamily: N-succinylamino acid racemase and a new pathway for the irreversible conversion of D- to L-amino acids, Biochemistry 45, 4455-4462.
-
(2006)
Biochemistry
, vol.45
, pp. 4455-4462
-
-
Sakai, A.1
Xiang, D.F.2
Xu, C.3
Song, L.4
Yew, W.S.5
Raushel, F.M.6
Gerlt, J.A.7
-
7
-
-
0029651191
-
A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids
-
Babbitt, P. C., Mrachko, G. T., Hasson, M. S., Huisman, G. W., Kolter, R., Ringe, D., Petsko, G. A., Kenyon, G. L., and Gerlt, J. A. (1995) A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids, Science 267, 1159-1161.
-
(1995)
Science
, vol.267
, pp. 1159-1161
-
-
Babbitt, P.C.1
Mrachko, G.T.2
Hasson, M.S.3
Huisman, G.W.4
Kolter, R.5
Ringe, D.6
Petsko, G.A.7
Kenyon, G.L.8
Gerlt, J.A.9
-
8
-
-
0033549133
-
Evolution of enzymatic activities in the enolase superfamily: Identification of a "new" general acid catalyst in the active site of D-galactonate dehydratase from Escherichia coli
-
Wieczorek, S. W., Kalivoda, K. A., Clifton, J. G., Ringe, D., Petsko, G. A., and Gerlt, J. A. (1999) Evolution of enzymatic activities in the enolase superfamily: Identification of a "new" general acid catalyst in the active site of D-galactonate dehydratase from Escherichia coli, J. Am. Chem. Soc. 121, 4540-4541.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 4540-4541
-
-
Wieczorek, S.W.1
Kalivoda, K.A.2
Clifton, J.G.3
Ringe, D.4
Petsko, G.A.5
Gerlt, J.A.6
-
9
-
-
33845401627
-
Evolution of enzymatic activities in the enolase superfamily: L-Fuconate dehydratase from Xanthomonas campestris
-
Yew, W. S., Fedorov, A. A., Fedorov, E. V., Rakus, J. F., Pierce, R. W., Almo, S. C., and Gerlt, J. A. (2006) Evolution of enzymatic activities in the enolase superfamily: L-Fuconate dehydratase from Xanthomonas campestris, Biochemistry 45, 14582-14597.
-
(2006)
Biochemistry
, vol.45
, pp. 14582-14597
-
-
Yew, W.S.1
Fedorov, A.A.2
Fedorov, E.V.3
Rakus, J.F.4
Pierce, R.W.5
Almo, S.C.6
Gerlt, J.A.7
-
10
-
-
0001304246
-
Mandelate racemase: Structure-function studies of a pseudosymmetric enzyme
-
Kenyon, G. L., Gerlt, J. A., Petsko, G. A., and Kozarich, J. W. (1995) Mandelate racemase: Structure-function studies of a pseudosymmetric enzyme, Acc. Chem. Res. 28, 178-186.
-
(1995)
Acc. Chem. Res.
, vol.28
, pp. 178-186
-
-
Kenyon, G.L.1
Gerlt, J.A.2
Petsko, G.A.3
Kozarich, J.W.4
-
11
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
(Carter, C. W. J., Sweet, R. M., Abelson, J. N., and Simon, M. I., Eds.), Academic Press, New York
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode, in Methods in Enzymology (Carter, C. W. J., Sweet, R. M., Abelson, J. N., and Simon, M. I., Eds.) pp 307-326, Academic Press, New York.
-
(1997)
Methods in Enzymology
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
12
-
-
0033119895
-
Automated MAD and MIR structure solution
-
Terwilliger, T. C., and Berendzen, J. (1999) Automated MAD and MIR structure solution, Acta Crystallogr., Sect. D: Biol. Crystallogr. 55, 849-861.
-
(1999)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.55
, pp. 849-861
-
-
Terwilliger, T.C.1
Berendzen, J.2
-
13
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLAno, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr. D54.
-
(1998)
Acta Crystallogr.
, vol.D54
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
14
-
-
0022333120
-
Interactive computer graphics: FRODO
-
Jones, A. T. (1985) Interactive computer graphics: FRODO, Methods Enzymol. 115, 157-171.
-
(1985)
Methods Enzymol.
, vol.115
, pp. 157-171
-
-
Jones, A.T.1
-
15
-
-
0024962468
-
Enzymatic synthesis of [4R-2H]NAD (P)H and [4S-2H]NAD(P)H and determination of the stereospecificity of 7 alpha- and 12 alpha hydroxysteroid dehydrogenase
-
Ottolina, G., Riva, S., Carrea, G., Danieli, B., and Buckmann, A. F. (1989) Enzymatic synthesis of [4R-2H]NAD (P)H and [4S-2H]NAD(P)H and determination of the stereospecificity of 7 alpha- and 12 alpha hydroxysteroid dehydrogenase, Biochim. Biophys. Acta 998, 173-178.
-
(1989)
Biochim. Biophys. Acta
, vol.998
, pp. 173-178
-
-
Ottolina, G.1
Riva, S.2
Carrea, G.3
Danieli, B.4
Buckmann, A.F.5
-
16
-
-
0032514651
-
Evolution of enzymatic activities in the enolase superfamily: Characterization of the D-glucarate/galactarate catabolic pathway in Escherichia coli
-
Hubbard, B. K., Koch, M., Palmer, D. R., Babbitt, P. C., and Gerlt, J. A. (1998) Evolution of enzymatic activities in the enolase superfamily: characterization of the D-glucarate/galactarate catabolic pathway in Escherichia coli, Biochemistry 37, 14369-14375.
-
(1998)
Biochemistry
, vol.37
, pp. 14369-14375
-
-
Hubbard, B.K.1
Koch, M.2
Palmer, D.R.3
Babbitt, P.C.4
Gerlt, J.A.5
-
17
-
-
0025941721
-
Mechanism of the reaction catalyzed by mandelate racemase. 1. Chemical and kinetic evidence for a two-base mechanism
-
Powers, V. M., Koo, C. W., Kenyon, G. L., Gerlt, J. A., and Kozarich, J. W. (1991) Mechanism of the reaction catalyzed by mandelate racemase. 1. Chemical and kinetic evidence for a two-base mechanism, Biochemistry 30, 9255-9263.
-
(1991)
Biochemistry
, vol.30
, pp. 9255-9263
-
-
Powers, V.M.1
Koo, C.W.2
Kenyon, G.L.3
Gerlt, J.A.4
Kozarich, J.W.5
-
18
-
-
0026002950
-
Mechanism of the reaction catalyzed by mandelate racemase. 3. Asymmetry in reactions catalyzed by the H297N mutant
-
Landro, J. A., Kallarakal, A. T., Ransom, S. C., Gerlt, J. A., Kozarich, J. W., Neidhart, D. J., and Kenyon, G. L. (1991) Mechanism of the reaction catalyzed by mandelate racemase. 3. Asymmetry in reactions catalyzed by the H297N mutant, Biochemistry 30, 9274-9281.
-
(1991)
Biochemistry
, vol.30
, pp. 9274-9281
-
-
Landro, J.A.1
Kallarakal, A.T.2
Ransom, S.C.3
Gerlt, J.A.4
Kozarich, J.W.5
Neidhart, D.J.6
Kenyon, G.L.7
-
19
-
-
0020794409
-
Formation of a carbinolamine intermediate in the tertiary amine catalyzed enolization of oxaloacetic acid. An alternative mechanism for enolization
-
Bruice, P. Y. (1983) Formation of a carbinolamine intermediate in the tertiary amine catalyzed enolization of oxaloacetic acid. An alternative mechanism for enolization, J. Am. Chem. Soc. 105, 4982-4996.
-
(1983)
J. Am. Chem. Soc.
, vol.105
, pp. 4982-4996
-
-
Bruice, P.Y.1
-
20
-
-
0012067357
-
Catalysis of the enolization of oxaloacetic acid by primary and secondary amines via a carbinolamine intermediate
-
Bruice, P. Y. (1989) Catalysis of the enolization of oxaloacetic acid by primary and secondary amines via a carbinolamine intermediate, J. Am. Chem. Soc. 111, 962-970.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 962-970
-
-
Bruice, P.Y.1
-
21
-
-
3042806194
-
Lack of concertedness in the catalysis of the enolization of oxaloacetic acid by general acids and bases. Formation of a carbinolamine intermediate in the tertiary amine catalyzed enolization reaction
-
Bruice, P. Y., and Bruice, T. C. (1978) Lack of concertedness in the catalysis of the enolization of oxaloacetic acid by general acids and bases. Formation of a carbinolamine intermediate in the tertiary amine catalyzed enolization reaction, J. Am. Chem. Soc. 100, 4793-4801.
-
(1978)
J. Am. Chem. Soc.
, vol.100
, pp. 4793-4801
-
-
Bruice, P.Y.1
Bruice, T.C.2
-
22
-
-
0006633488
-
Dehydration and enolization of oxalacetate: Catalysis by tertiary amines
-
Emly, M., and Leussing, D. L. (1981) Dehydration and enolization of oxalacetate: catalysis by tertiary amines, J. Am. Chem. Soc. 103, 628-634.
-
(1981)
J. Am. Chem. Soc.
, vol.103
, pp. 628-634
-
-
Emly, M.1
Leussing, D.L.2
-
23
-
-
0022978829
-
Stereochemistry and function of oxaloacetate keto-enol tautomerase
-
Johnson, J. D., Creighton, D. J., and Lambert, M. R. (1986) Stereochemistry and function of oxaloacetate keto-enol tautomerase, J. Biol. Chem. 261, 4535-4541.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 4535-4541
-
-
Johnson, J.D.1
Creighton, D.J.2
Lambert, M.R.3
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